IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
784	 47.33	0	1015383..1016132	-	249	56417154	-	AM1122	-	hypothetical protein
785	 46.23	-1	1016136..1017089	-	317	56417155	czcD	AM1123	-	cation efflux system protein
786	 50.38	0	1017256..1017918	-	220	56417156	ccmB	AM1125	-	heme exporter protein B
787	 46.14	-1	1018019..1018432	+	137	56417157	dksA	AM1126	-	dnaK suppressor protein
788	 47.08	0	1018760..1019443	-	227	56417158	dtbS	AM1128	-	dethiobiotin synthase
789	 49.46	0	1019519..1020436	+	305	56417159	ftsY	AM1129	-	cell division protein
790	 50.51	0	1020711..1022177	+	488	56417160	icd	AM1131	-	isocitrate dehydrogenase
791	 51.96	0	1022302..1024062	+	586	56417161	recJ	AM1133	-	single-stranded-DNA-specific exonuclease
792	 49.33	0	1024037..1024336	-	99	56417162	-	AM1135	-	hypothetical protein
793	 48.97	0	1024527..1025786	+	419	56417163	pcnB	AM1136	-	poly (A) polymerase
794	 48.53	0	1025923..1026363	-	146	56417164	ndk	AM1137	-	nucleoside diphosphate kinase
795	 50.18	0	1026592..1027155	+	187	56417165	-	AM1138	-	hypothetical protein
796	 56.19	+2	1027570..1028562	+	330	56417166	omp1	AM1139	-	outer membrane protein 1
797	 59.00	+2	1028727..1029665	+	312	56417167	opag3	AM1140	-	msp2 operon associated gene 3
798	 59.06	+2	1028745..1029848	-	367	56417168	-	AM1141	-	hypothetical protein
799	 58.33	+2	1029680..1030591	+	303	56417169	opag2	AM1142	-	msp2 operon associated gene 2
800	 56.23	+2	1030615..1031007	+	130	56417170	opag1	AM1143	-	msp2 operon associated gene 1
801	 47.88	0	1031020..1032243	+	407	56417171	msp2	AM1144	-	major surface protein 2
802	 49.70	0	1032455..1032949	-	164	56417172	-	AM1145	-	hypothetical protein
803	 51.45	0	1032906..1033490	+	194	56417173	-	AM1146	-	hypothetical protein
804	 44.10	-1	1034507..1034896	-	129	56417174	orfX	AM1149	-	ORF X
805	 51.16	0	1038392..1039126	-	244	56417175	omp2	AM1156	-	outer membrane protein 2
806	 53.00	+1	1039207..1039857	-	216	56417176	omp3	AM1159	-	outer membrane protein 3
807	 54.32	+1	1039827..1040150	+	107	56417177	-	AM1161	-	hypothetical protein
808	 48.03	0	1040420..1041637	+	405	56417178	omp4	AM1164	-	outer membrane protein 4
809	 46.99	0	1041615..1041863	+	82	56417179	-	AM1165	-	hypothetical protein
810	 52.19	0	1041982..1043100	+	372	56417180	omp5	AM1166	-	outer membrane protein 5
811	 47.55	0	1043468..1044283	-	271	56417181	-	AM1168	-	hypothetical protein
812	 48.88	0	1044334..1046256	-	640	56417182	ccmF	AM1169	-	cytochrome c-type biogenesis protein
813	 49.56	0	1046615..1049086	+	823	56417183	valS	AM1170	-	valyl-tRNA synthetase
814	 48.22	0	1049982..1050431	-	149	56417184	smpB	AM1171	-	SsrA-binding protein
815	 50.55	0	1050434..1051066	-	210	56417185	ribA	AM1172	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
816	 46.29	-1	1051085..1051609	-	174	56417186	greA	AM1173	-	transcription elongation factor greA
817	 50.92	0	1051606..1053129	-	507	56417187	atpA	AM1174	-	F0F1 ATP synthase subunit alpha
818	 51.13	0	1053149..1053721	-	190	56417188	atpH	AM1175	-	ATP synthase delta chain
819	 46.83	0	1054297..1054548	-	83	56417189	-	AM1179	-	hypothetical protein
820	 48.91	0	1054552..1055790	-	412	56417190	-	AM1180	-	hypothetical protein
821	 47.94	0	1055787..1056539	-	250	56417191	-	AM1181	-	hypothetical protein
822	 46.37	-1	1056544..1057770	-	408	56417192	-	AM1183	-	hypothetical protein
823	 44.48	-1	1058051..1059100	+	349	56417193	-	AM1185	-	hypothetical protein
824	 49.11	0	1059095..1060324	-	409	56417194	-	AM1186	-	hypothetical protein
825	 50.48	0	1060680..1061933	-	417	56417195	gltA	AM1187	-	citrate synthase
826	 50.82	0	1061970..1063559	-	529	56417196	guaA	AM1188	-	bifunctional GMP synthase/glutamine amidotransferase protein
827	 52.81	+1	1063676..1063906	-	76	56417197	-	AM1189	-	hypothetical protein
828	 51.52	0	1064038..1064433	+	131	56417198	-	AM1191	-	hypothetical protein
829	 52.00	0	1065049..1066350	+	433	56417199	pdhC	AM1192	-	branched-chain alpha-keto acid dehydrogenase subunit E2
830	 49.41	0	1066507..1066761	-	84	56417200	-	AM1193	-	hypothetical protein
831	 52.00	0	1066669..1067568	+	299	161544979	fbaB	AM1194	-	fructose-bisphosphate aldolase
832	 48.39	0	1067822..1069627	-	601	56417202	pbpA1	AM1196	-	penicillin-binding protein
833	 49.15	0	1069608..1070543	-	311	56417203	secF	AM1197	-	preprotein translocase subunit SecF
834	 50.92	0	1070689..1071069	+	126	56417204	-	AM1200	-	hypothetical protein
835	 48.26	0	1071072..1072304	-	410	56417205	hemA	AM1202	-	5-aminolevulinate synthase
836	 51.16	0	1072474..1073718	-	414	56417206	tyrS	AM1205	-	tyrosyl-tRNA synthetase
837	 49.61	0	1074028..1075434	+	468	56417207	glnA	AM1206	-	glutamine synthetase
838	 46.65	-1	1075445..1076473	+	342	56417208	mraY1	AM1207	-	phospho-n-acetylmuramoyl-pentapeptide-transferase
839	 47.46	0	1076483..1077466	+	327	56417209	ispB	AM1208	-	octaprenyl-diphosphate synthase
840	 49.52	0	1077541..1079622	-	693	56417210	-	AM1209	-	hypothetical protein
841	 49.58	0	1079749..1080468	-	239	56417211	mkl	AM1210	-	ribonucleotide transport ATP-binding protein
842	 49.87	0	1080473..1081252	-	259	56417212	-	AM1212	-	hypothetical protein
843	 48.40	0	1081271..1082053	-	260	56417213	rpe	AM1213	-	ribulose-phosphate 3-epimerase
844	 46.97	0	1082130..1084724	-	864	56417214	polA	AM1214	-	DNA polymerase I
845	 52.45	0	1085541..1085927	+	128	56417215	-	AM1216	-	hypothetical protein
846	 53.91	+1	1085950..1086858	+	302	56417216	argF	AM1217	-	ornithine carbamoyltransferase
847	 47.13	0	1086868..1087983	+	371	56417217	recF	AM1218	-	recombination protein F
848	 46.75	-1	1087980..1088441	-	153	56417218	omp6	AM1219	-	outer membrane protein 6
849	 53.65	+1	1088481..1089671	-	396	56417219	omp7	AM1220	-	outer membrane protein 7
850	 53.33	+1	1089736..1090935	-	399	56417220	omp8	AM1221	-	outer membrane protein 8
851	 52.97	+1	1090999..1092210	-	403	56417221	omp9	AM1222	-	outer membrane protein 9
852	 52.10	0	1092273..1093535	-	420	56417222	omp10	AM1223	-	outer membrane protein 10
853	 52.49	0	1093976..1094518	-	180	56417223	-	AM1225	-	hypothetical protein
854	 51.17	0	1094876..1095514	+	212	56417224	-	AM1226	-	hypothetical protein
855	 48.05	0	1095979..1096902	-	307	56417225	-	AM1228	-	hypothetical protein
856	 47.62	0	1097053..1098417	-	454	56417226	mviN	AM1229	-	virulence factor MVIN
857	 50.35	0	1098643..1099500	+	285	56417227	lgt	AM1231	-	prolipoprotein diacylglyceryl transferase
858	 50.93	0	1099740..1099955	+	71	56417228	-	AM1232	-	hypothetical protein
859	 47.77	0	1100204..1100494	-	96	161544978	rpsT	AM1233	-	30S ribosomal protein S20
860	 47.52	0	1100613..1101338	-	241	56417230	plsC	AM1235	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
861	 49.64	0	1101370..1101927	+	185	56417231	def	AM1236	-	N-formylmethionylaminoacyl-tRNA deformylase
862	 52.12	0	1102174..1103046	+	290	56417232	-	AM1237	-	hypothetical protein
863	 49.52	0	1103188..1103916	+	242	56417233	-	AM1238	-	hypothetical protein
864	 54.39	+1	1104007..1104234	-	75	56417234	-	AM1239	-	hypothetical protein
865	 48.79	0	1104293..1104499	-	68	56417235	-	AM1240	-	hypothetical protein
866	 46.67	-1	1104735..1105244	-	169	56417236	-	AM1241	-	hypothetical protein
867	 48.92	0	1105289..1106398	-	369	56417237	-	AM1242	-	hypothetical protein
868	 47.44	0	1106811..1108766	-	651	56417238	uvrB	AM1243	-	excinuclease ABC subunit B
869	 46.95	0	1108831..1110336	+	501	56417239	secD	AM1245	-	preprotein translocase subunit SecD
870	 50.71	0	1110826..1112649	+	607	56417240	-	AM1248	-	hypothetical protein
871	 47.01	0	1113315..1113548	+	77	56417241	orfY	AM1251	-	ORF Y
872	 45.13	-1	1113621..1114010	+	129	56417242	orfX	AM1253	-	ORF X
873	 51.11	0	1114075..1115559	-	494	56417243	-	AM1254	-	hypothetical protein
874	 52.32	0	1115669..1116658	-	329	56417244	omp11	AM1255	-	outer membrane protein 11
875	 48.60	0	1116852..1117709	-	285	56417245	omp12	AM1257	-	outer membrane protein 12
876	 52.79	+1	1117917..1118975	-	352	56417246	omp13	AM1258	-	outer membrane protein 13
877	 51.20	0	1119261..1120514	+	417	56417247	ftsZ	AM1261	-	cell division protein FtsZ
878	 44.52	-1	1120891..1121355	+	154	56417248	-	AM1264	-	hypothetical protein
879	 46.45	-1	1121429..1122244	+	271	56417249	parA	AM1266	-	chromosome partitioning protein
880	 48.55	0	1122241..1123068	+	275	56417250	parB	AM1267	-	chromosome partitioning protein
881	 49.39	0	1123080..1123652	+	190	56417251	rimM	AM1269	-	16S rRNA processing protein
882	 49.15	0	1123649..1124356	+	235	56417252	trmD	AM1270	-	tRNA (guanine-N1)-methyltransferase
883	 47.16	0	1124349..1124753	+	134	56417253	rplS	AM1271	-	50S ribosomal protein L19
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.