IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
735	 44.81	-1	961959..962324	+	121	56417105	-	AM1058	-	hypothetical protein
736	 46.67	-1	962297..962566	+	89	56417106	orfY	AM1059	-	ORF Y
737	 45.45	-1	962633..963028	+	131	56417107	orfX	AM1061	-	ORF X
738	 46.54	-1	963365..966196	+	943	56417108	msp3	AM1063	-	major surface protein 3
739	 51.12	0	966443..967555	+	370	56417109	hflK	AM1064	-	hflK protein
740	 46.39	-1	967557..968429	+	290	56417110	hflC	AM1065	-	hflC protein
741	 51.09	0	968432..969895	+	487	56417111	-	AM1066	-	hypothetical protein
742	 49.76	0	969888..970502	+	204	56417112	-	AM1067	-	hypothetical protein
743	 52.36	0	970489..971187	+	232	56417113	rnc	AM1069	-	ribonuclease III
744	 49.04	0	971218..971841	+	207	56417114	cox11	AM1070	-	cytochrome C oxidase assembly protein
745	 55.81	+2	971851..972633	-	260	56417115	-	AM1073	-	hypothetical protein
746	 54.34	+1	972972..973766	-	264	56417116	ana29	AM1076	-	hypothetical protein
747	 47.30	0	973899..974120	+	73	56417117	-	AM1077	-	hypothetical protein
748	 52.40	0	974177..975052	-	291	56417118	-	AM1078	-	hypothetical protein
749	 50.34	0	975249..976583	-	444	56417119	-	AM1079	-	hypothetical protein
750	 49.16	0	976596..978017	-	473	56417120	-	AM1080	-	hypothetical protein
751	 46.78	-1	977980..978492	-	170	56417121	lspA	AM1081	-	lipoprotein signal peptidase
752	 51.10	0	978571..979482	-	303	56417122	ribF	AM1082	-	riboflavin kinase / FAD synthetase protein
753	 49.79	0	979550..979792	+	80	56417123	grxC1	AM1083	-	glutaredoxin 3
754	 54.31	+1	979944..980801	-	285	56417124	hemK	AM1084	-	protein-(glutamine-N5) methyltransferase
755	 52.38	0	980982..981779	-	265	56417125	map	AM1086	-	methionine aminopeptidase
756	 52.05	0	981783..983096	-	437	56417126	sucB	AM1087	-	dihydrolipoamide acetyltransferase component
757	 49.23	0	983127..983516	-	129	56417127	-	AM1088	-	hypothetical protein
758	 51.78	0	983746..984645	-	299	56417128	panC	AM1089	-	pantoate-beta-alanine ligase
759	 51.79	0	984734..985876	+	380	56417129	-	AM1091	-	hypothetical protein
760	 49.35	0	985863..987092	-	409	56417130	dsbD	AM1092	-	C-type cytochrome biogenesis protein
761	 51.65	0	987136..987468	-	110	56417131	-	AM1093	-	hypothetical protein
762	 51.45	0	987506..988609	+	367	56417132	-	AM1094	-	hypothetical protein
763	 48.80	0	988615..990954	+	779	56417133	oma87	AM1096	-	outer membrane protein
764	 52.58	+1	990941..991501	+	186	56417134	-	AM1097	-	hypothetical protein
765	 49.77	0	991507..991950	+	147	56417135	fabZ	AM1098	-	(3R)-hydroxymyristoyl-ACP dehydratase
766	 49.61	0	991965..993506	+	513	56417136	purH	AM1099	-	phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase)
767	 49.72	0	993515..994057	-	180	56417137	pgsA	AM1100	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
768	 49.81	0	994766..996070	+	434	56417138	-	AM1103	-	hypothetical protein
769	 49.83	0	996098..998122	+	674	56417139	slt	AM1104	-	soluble lytic murein transglycosylase precursor
770	 49.34	0	998129..998815	-	228	56417140	surf1	AM1105	-	surfeit locus protein 1
771	 48.33	0	999373..1001166	+	597	56417141	-	AM1108	-	hypothetical protein
772	 48.85	0	1001259..1002611	-	450	56417142	-	AM1109	-	hypothetical protein
773	 50.00	0	1002680..1003483	+	267	56417143	atpB	AM1110	-	F0F1 ATP synthase subunit A
774	 55.18	+1	1003567..1004193	-	208	56417144	-	AM1111	-	hypothetical protein
775	 53.78	+1	1004848..1005072	+	74	161544981	atpE	AM1112	-	F0F1 ATP synthase subunit C
776	 54.29	+1	1005079..1005579	+	166	56417146	-	AM1113	-	hypothetical protein
777	 50.00	0	1005576..1006073	+	165	56417147	-	AM1114	-	hypothetical protein
778	 49.02	0	1006198..1007472	-	424	56417148	ftsA	AM1115	-	cell division protein FTSA
779	 50.95	0	1007504..1009075	-	523	56417149	trkH	AM1116	-	potassium uptake protein
780	 49.27	0	1009146..1010651	+	501	56417150	mesJ	AM1117	-	cell cycle protein
781	 49.75	0	1010664..1012496	+	610	56417151	ftsH	AM1119	-	cell division protein
782	 49.56	0	1012689..1015307	+	872	161544980	secA	AM1120	-	preprotein translocase subunit SecA
783	 58.94	+2	1015158..1015364	-	68	56417153	-	AM1121	-	hypothetical protein
784	 47.33	0	1015383..1016132	-	249	56417154	-	AM1122	-	hypothetical protein
785	 46.23	-1	1016136..1017089	-	317	56417155	czcD	AM1123	-	cation efflux system protein
786	 50.38	0	1017256..1017918	-	220	56417156	ccmB	AM1125	-	heme exporter protein B
787	 46.14	-1	1018019..1018432	+	137	56417157	dksA	AM1126	-	dnaK suppressor protein
788	 47.08	0	1018760..1019443	-	227	56417158	dtbS	AM1128	-	dethiobiotin synthase
789	 49.46	0	1019519..1020436	+	305	56417159	ftsY	AM1129	-	cell division protein
790	 50.51	0	1020711..1022177	+	488	56417160	icd	AM1131	-	isocitrate dehydrogenase
791	 51.96	0	1022302..1024062	+	586	56417161	recJ	AM1133	-	single-stranded-DNA-specific exonuclease
792	 49.33	0	1024037..1024336	-	99	56417162	-	AM1135	-	hypothetical protein
793	 48.97	0	1024527..1025786	+	419	56417163	pcnB	AM1136	-	poly (A) polymerase
794	 48.53	0	1025923..1026363	-	146	56417164	ndk	AM1137	-	nucleoside diphosphate kinase
795	 50.18	0	1026592..1027155	+	187	56417165	-	AM1138	-	hypothetical protein
796	 56.19	+2	1027570..1028562	+	330	56417166	omp1	AM1139	-	outer membrane protein 1
797	 59.00	+2	1028727..1029665	+	312	56417167	opag3	AM1140	-	msp2 operon associated gene 3
798	 59.06	+2	1028745..1029848	-	367	56417168	-	AM1141	-	hypothetical protein
799	 58.33	+2	1029680..1030591	+	303	56417169	opag2	AM1142	-	msp2 operon associated gene 2
800	 56.23	+2	1030615..1031007	+	130	56417170	opag1	AM1143	-	msp2 operon associated gene 1
801	 47.88	0	1031020..1032243	+	407	56417171	msp2	AM1144	-	major surface protein 2
802	 49.70	0	1032455..1032949	-	164	56417172	-	AM1145	-	hypothetical protein
803	 51.45	0	1032906..1033490	+	194	56417173	-	AM1146	-	hypothetical protein
804	 44.10	-1	1034507..1034896	-	129	56417174	orfX	AM1149	-	ORF X
805	 51.16	0	1038392..1039126	-	244	56417175	omp2	AM1156	-	outer membrane protein 2
806	 53.00	+1	1039207..1039857	-	216	56417176	omp3	AM1159	-	outer membrane protein 3
807	 54.32	+1	1039827..1040150	+	107	56417177	-	AM1161	-	hypothetical protein
808	 48.03	0	1040420..1041637	+	405	56417178	omp4	AM1164	-	outer membrane protein 4
809	 46.99	0	1041615..1041863	+	82	56417179	-	AM1165	-	hypothetical protein
810	 52.19	0	1041982..1043100	+	372	56417180	omp5	AM1166	-	outer membrane protein 5
811	 47.55	0	1043468..1044283	-	271	56417181	-	AM1168	-	hypothetical protein
812	 48.88	0	1044334..1046256	-	640	56417182	ccmF	AM1169	-	cytochrome c-type biogenesis protein
813	 49.56	0	1046615..1049086	+	823	56417183	valS	AM1170	-	valyl-tRNA synthetase
814	 48.22	0	1049982..1050431	-	149	56417184	smpB	AM1171	-	SsrA-binding protein
815	 50.55	0	1050434..1051066	-	210	56417185	ribA	AM1172	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
816	 46.29	-1	1051085..1051609	-	174	56417186	greA	AM1173	-	transcription elongation factor greA
817	 50.92	0	1051606..1053129	-	507	56417187	atpA	AM1174	-	F0F1 ATP synthase subunit alpha
818	 51.13	0	1053149..1053721	-	190	56417188	atpH	AM1175	-	ATP synthase delta chain
819	 46.83	0	1054297..1054548	-	83	56417189	-	AM1179	-	hypothetical protein
820	 48.91	0	1054552..1055790	-	412	56417190	-	AM1180	-	hypothetical protein
821	 47.94	0	1055787..1056539	-	250	56417191	-	AM1181	-	hypothetical protein
822	 46.37	-1	1056544..1057770	-	408	56417192	-	AM1183	-	hypothetical protein
823	 44.48	-1	1058051..1059100	+	349	56417193	-	AM1185	-	hypothetical protein
824	 49.11	0	1059095..1060324	-	409	56417194	-	AM1186	-	hypothetical protein
825	 50.48	0	1060680..1061933	-	417	56417195	gltA	AM1187	-	citrate synthase
826	 50.82	0	1061970..1063559	-	529	56417196	guaA	AM1188	-	bifunctional GMP synthase/glutamine amidotransferase protein
827	 52.81	+1	1063676..1063906	-	76	56417197	-	AM1189	-	hypothetical protein
828	 51.52	0	1064038..1064433	+	131	56417198	-	AM1191	-	hypothetical protein
829	 52.00	0	1065049..1066350	+	433	56417199	pdhC	AM1192	-	branched-chain alpha-keto acid dehydrogenase subunit E2
830	 49.41	0	1066507..1066761	-	84	56417200	-	AM1193	-	hypothetical protein
831	 52.00	0	1066669..1067568	+	299	161544979	fbaB	AM1194	-	fructose-bisphosphate aldolase
832	 48.39	0	1067822..1069627	-	601	56417202	pbpA1	AM1196	-	penicillin-binding protein
833	 49.15	0	1069608..1070543	-	311	56417203	secF	AM1197	-	preprotein translocase subunit SecF
834	 50.92	0	1070689..1071069	+	126	56417204	-	AM1200	-	hypothetical protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.