IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
663	 48.87	0	869149..871767	+	872	56417033	clpB	AM949	-	ATP-dependent Clp protease ATP-binding subunit
664	 48.80	0	871879..873540	-	553	56417034	-	AM950	-	hypothetical protein
665	 54.18	+1	873771..874763	-	330	56417035	-	AM952	-	hypothetical protein
666	 51.15	0	874868..875608	-	246	56417036	-	AM953	-	hypothetical protein
667	 48.62	0	875813..876211	+	132	56417037	-	AM955	-	hypothetical protein
668	 52.34	0	876183..877787	+	534	56417038	pepA	AM956	-	leucyl aminopeptidase
669	 50.08	0	877803..878447	+	214	56417039	-	AM957	-	hypothetical protein
670	 49.25	0	878594..880069	-	491	56417040	-	AM959	-	hypothetical protein
671	 50.57	0	880211..880993	-	260	56417041	purQ	AM960	-	phosphoribosylformylglycinamidine synthase
672	 52.72	+1	881074..882987	+	637	56417042	gidA	AM961	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
673	 52.48	0	883300..884265	-	321	56417043	glpX	AM964	-	fructose 1,6-bisphosphatase II
674	 51.71	0	884352..885053	+	233	56417044	-	AM965	-	hypothetical protein
675	 44.52	-1	885213..885668	+	151	56417045	-	AM967	-	hypothetical protein
676	 50.88	0	885769..886053	+	94	56417046	-	AM968	-	hypothetical protein
677	 51.38	0	886040..887014	+	324	56417047	bioB	AM969	-	biotin synthase
678	 48.84	0	887742..890792	+	1016	56417048	purL	AM973	-	phosphoribosylformylglycinamidine synthase
679	 53.62	+1	890823..891029	+	68	56417049	-	AM974	-	hypothetical protein
680	 50.64	0	891166..891870	+	234	56417050	-	AM975	-	hypothetical protein
681	 54.63	+1	891926..892141	-	71	56417051	-	AM976	-	hypothetical protein
682	 52.82	+1	892150..892698	-	182	56417052	-	AM977	-	hypothetical protein
683	 48.01	0	892797..894077	-	426	56417053	-	AM979	-	hypothetical protein
684	 48.78	0	894252..894620	+	122	56417054	-	AM980	-	hypothetical protein
685	 49.49	0	894865..895755	+	296	56417055	-	AM981	-	hypothetical protein
686	 49.54	0	895993..896646	-	217	56417056	-	AM982	-	hypothetical protein
687	 51.23	0	896760..897815	+	351	56417057	purM	AM983	-	phosphoribosylaminoimidazole synthetase
688	 49.84	0	897807..898757	-	316	56417058	xerC	AM984	-	integrase/recombinase ripx
689	 53.16	+1	898926..900095	+	389	56417059	gpsA	AM985	-	gylcerol-3-phosphate dehydrogenase
690	 53.07	+1	900092..900547	+	151	56417060	omp15	AM987	-	outer membrane protein 15
691	 44.27	-1	900783..901157	-	124	56417061	orfX	AM989	-	ORF X
692	 44.23	-1	901157..901468	-	103	56417062	orfY	AM990	-	ORF Y
693	 45.63	-1	901852..903234	-	460	56417063	rho	AM992	-	transcription termination factor Rho
694	 50.15	0	903504..903842	-	112	56417064	-	AM997	-	hypothetical protein
695	 52.11	0	904024..904593	+	189	56417065	hslV	AM998	-	ATP-dependent protease peptidase subunit
696	 48.38	0	904590..906038	+	482	56417066	hslU	AM999	-	ATP-dependent protease ATP-binding subunit
697	 51.34	0	906042..906785	+	247	56417067	ubiE	AM1000	-	ubiquinone/menaquinone biosynthesis methyltransferase
698	 47.37	0	906786..908153	-	455	56417068	metS	AM1001	-	methionyl-tRNA synthetase
699	 49.96	0	908599..909837	+	412	56417069	lysC	AM1005	-	aspartate kinase
700	 49.07	0	909871..910086	-	71	56417070	-	AM1006	-	hypothetical protein
701	 50.54	0	910094..910924	+	276	56417071	coxB	AM1007	-	cytochrome c oxidase subunit II
702	 49.74	0	911021..912586	+	521	56417072	coxA	AM1008	-	cytochrome c oxidase subunit I
703	 49.78	0	912596..913501	+	301	56417073	ctaB	AM1009	-	protoheme IX farnesyltransferase
704	 52.43	0	913554..914480	-	308	56417074	-	AM1010	-	hypothetical protein
705	 54.32	+1	914624..915886	+	420	56417075	purD	AM1011	-	phosphoribosylamine--glycine ligase
706	 51.87	0	915917..916423	+	168	56417076	yajC	AM1012	-	preprotein translocase subunit
707	 49.97	0	916492..918318	+	608	56417077	glmS	AM1013	-	glucosamine--fructose-6-phosphate aminotransferase
708	 50.61	0	918685..919824	-	379	56417078	dnaN	AM1014	-	DNA polymerase III beta chain
709	 48.13	0	920045..920659	-	204	56417079	rnd	AM1015	-	ribonuclease D
710	 49.71	0	920724..921596	-	290	56417080	czcR	AM1016	-	transcriptional activator protein
711	 49.23	0	921897..922544	-	215	56417081	-	AM1018	-	hypothetical protein
712	 50.57	0	923388..923915	-	175	56417082	ppa	AM1020	-	inorganic phosphatase protein
713	 53.78	+1	924979..925203	-	74	56417083	-	AM1021	-	hypothetical protein
714	 53.68	+1	925139..925600	-	153	56417084	rpsI	AM1022	-	30S ribosomal protein S9
715	 54.00	+1	925572..926084	-	170	56417085	rplM	AM1023	-	50S ribosomal protein L13
716	 48.35	0	926120..927517	+	465	56417086	tolC	AM1024	-	outer membrane protein
717	 51.35	0	927536..928129	+	197	56417087	-	AM1025	-	hypothetical protein
718	 49.03	0	928257..929288	-	343	56417088	-	AM1027	-	hypothetical protein
719	 55.13	+1	929392..930171	+	259	56417089	prsA	AM1028	-	phosphoribosylpyrophosphate synthetase
720	 52.34	0	930364..930684	+	106	56417090	-	AM1030	-	hypothetical protein
721	 50.70	0	930720..933356	-	878	161544982	acnA	AM1032	-	aconitate hydratase
722	 51.43	0	933744..934196	-	150	56417092	apaG	AM1035	-	ApaG
723	 49.67	0	934272..935342	+	356	56417093	purK	AM1036	-	phosphoribosylaminoimidazole carboxylase
724	 49.03	0	935472..937625	-	717	56417094	-	AM1037	-	hypothetical protein
725	 50.81	0	938242..939717	+	491	56417095	-	AM1041	-	hypothetical protein
726	 49.86	0	940029..941474	+	481	56417096	-	AM1046	-	hypothetical protein
727	 52.11	0	941505..945434	-	1309	56417097	-	AM1048	-	hypothetical protein
728	 52.12	0	945638..949768	-	1376	56417098	-	AM1050	-	hypothetical protein
729	 49.23	0	950058..955655	-	1865	56417099	-	AM1051	-	hypothetical protein
730	 48.97	0	956209..958638	-	809	56417100	virB4	AM1053	-	VirB4 protein
731	 46.67	-1	958771..959145	-	124	56417101	-	AM1054	-	hypothetical protein
732	 46.83	0	959418..959795	-	125	56417102	-	AM1055	-	hypothetical protein
733	 47.21	0	960582..961172	-	196	56417103	-	AM1056	-	hypothetical protein
734	 52.64	+1	961182..961730	-	182	56417104	-	AM1057	-	hypothetical protein
735	 44.81	-1	961959..962324	+	121	56417105	-	AM1058	-	hypothetical protein
736	 46.67	-1	962297..962566	+	89	56417106	orfY	AM1059	-	ORF Y
737	 45.45	-1	962633..963028	+	131	56417107	orfX	AM1061	-	ORF X
738	 46.54	-1	963365..966196	+	943	56417108	msp3	AM1063	-	major surface protein 3
739	 51.12	0	966443..967555	+	370	56417109	hflK	AM1064	-	hflK protein
740	 46.39	-1	967557..968429	+	290	56417110	hflC	AM1065	-	hflC protein
741	 51.09	0	968432..969895	+	487	56417111	-	AM1066	-	hypothetical protein
742	 49.76	0	969888..970502	+	204	56417112	-	AM1067	-	hypothetical protein
743	 52.36	0	970489..971187	+	232	56417113	rnc	AM1069	-	ribonuclease III
744	 49.04	0	971218..971841	+	207	56417114	cox11	AM1070	-	cytochrome C oxidase assembly protein
745	 55.81	+2	971851..972633	-	260	56417115	-	AM1073	-	hypothetical protein
746	 54.34	+1	972972..973766	-	264	56417116	ana29	AM1076	-	hypothetical protein
747	 47.30	0	973899..974120	+	73	56417117	-	AM1077	-	hypothetical protein
748	 52.40	0	974177..975052	-	291	56417118	-	AM1078	-	hypothetical protein
749	 50.34	0	975249..976583	-	444	56417119	-	AM1079	-	hypothetical protein
750	 49.16	0	976596..978017	-	473	56417120	-	AM1080	-	hypothetical protein
751	 46.78	-1	977980..978492	-	170	56417121	lspA	AM1081	-	lipoprotein signal peptidase
752	 51.10	0	978571..979482	-	303	56417122	ribF	AM1082	-	riboflavin kinase / FAD synthetase protein
753	 49.79	0	979550..979792	+	80	56417123	grxC1	AM1083	-	glutaredoxin 3
754	 54.31	+1	979944..980801	-	285	56417124	hemK	AM1084	-	protein-(glutamine-N5) methyltransferase
755	 52.38	0	980982..981779	-	265	56417125	map	AM1086	-	methionine aminopeptidase
756	 52.05	0	981783..983096	-	437	56417126	sucB	AM1087	-	dihydrolipoamide acetyltransferase component
757	 49.23	0	983127..983516	-	129	56417127	-	AM1088	-	hypothetical protein
758	 51.78	0	983746..984645	-	299	56417128	panC	AM1089	-	pantoate-beta-alanine ligase
759	 51.79	0	984734..985876	+	380	56417129	-	AM1091	-	hypothetical protein
760	 49.35	0	985863..987092	-	409	56417130	dsbD	AM1092	-	C-type cytochrome biogenesis protein
761	 51.65	0	987136..987468	-	110	56417131	-	AM1093	-	hypothetical protein
762	 51.45	0	987506..988609	+	367	56417132	-	AM1094	-	hypothetical protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.