IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
598	 51.25	0	806001..806843	-	280	56416968	dapB	AM873	-	dihydrodipicolinate reductase
599	 44.86	-1	806956..807441	-	161	56416969	-	AM875	-	hypothetical protein
600	 48.22	0	807454..808353	-	299	56416970	ubiA	AM876	-	prenyltransferase
601	 51.11	0	808427..809686	-	419	56416971	aaaP	AM878	-	appendage-associated protein
602	 51.01	0	809841..811124	-	427	56416972	-	AM879	-	hypothetical protein
603	 51.48	0	811267..812109	-	280	56416973	-	AM880	-	hypothetical protein
604	 57.04	+2	812267..812401	+	44	56416974	rpmH	AM880.5	-	50S ribosomal protein L34
605	 53.89	+1	812407..812766	+	119	56416975	-	AM881	-	hypothetical protein
606	 50.30	0	812779..814098	+	439	56416976	-	AM882	-	hypothetical protein
607	 49.98	0	814157..816403	-	748	56416977	-	AM884	-	hypothetical protein
608	 50.76	0	816685..819048	-	787	56416978	pheT	AM885	-	phenylalanyl-tRNA synthetase beta chain
609	 52.35	0	819052..819456	-	134	56416979	rplQ	AM886	-	50S ribosomal protein L17
610	 50.32	0	819497..820597	-	366	56416980	rpoA	AM887	-	DNA-directed RNA polymerase subunit alpha
611	 53.60	+1	820618..820992	-	124	161544985	rpsK	AM888	-	30S ribosomal protein S11
612	 51.34	0	821002..821373	-	123	56416982	rpsM	AM890	-	30S ribosomal protein S13
613	 47.77	0	821437..822087	-	216	56416983	adk	AM891	-	adenylate kinase
614	 46.16	-1	822069..823370	-	433	56416984	secY	AM892	-	preprotein translocase subunit SecY
615	 51.47	0	823394..823834	-	146	56416985	rplO	AM893	-	50S ribosomal protein L15
616	 48.38	0	823848..824372	-	174	56416986	rpsE	AM894	-	30S ribosomal protein S5
617	 51.32	0	824383..824760	-	125	56416987	rplR	AM895	-	50S ribosomal protein L18
618	 50.00	0	824762..825307	-	181	56416988	rplF	AM896	-	50S ribosomal protein L6
619	 47.62	0	825319..825717	-	132	56416989	rpsH	AM897	-	30S ribosomal protein S8
620	 53.01	+1	825735..825983	-	82	56416990	rpsN	AM898	-	small ribosomal protein S14
621	 47.41	0	826052..826591	-	179	56416991	rplE	AM899	-	50S ribosomal protein L5
622	 49.37	0	826592..826909	-	105	56416992	rplX	AM900	-	50S ribosomal protein L24
623	 50.00	0	826906..827265	-	119	56416993	rplN	AM901	-	50S ribosomal protein L14
624	 47.44	0	827278..827511	-	77	56416994	rpsQ	AM903	-	30S ribosomal protein S17
625	 51.21	0	827501..827707	-	68	56416995	rpmC	AM904	-	50S ribosomal protein L29
626	 50.12	0	827715..828131	-	138	161544984	rplP	AM905	-	50S ribosomal protein L16
627	 48.74	0	828140..828775	-	211	56416997	rpsC	AM906	-	30S ribosomal protein S3
628	 50.44	0	828779..829117	-	112	56416998	rplV	AM907	-	50S ribosomal protein L22
629	 49.29	0	829121..829402	-	93	56416999	rpsS	AM908	-	30S ribosomal protein S19
630	 53.84	+1	829408..830241	-	277	56417000	rplB	AM909	-	50S ribosomal protein L2
631	 51.46	0	830238..830546	-	102	56417001	rplW	AM910	-	50S ribosomal protein L23
632	 48.64	0	830521..831147	-	208	56417002	rplD	AM911	-	50S ribosomal protein L4
633	 54.22	+1	831165..831863	-	232	56417003	rplC	AM912	-	50S ribosomal protein L3
634	 48.43	0	831865..832182	-	105	56417004	rpsJ	AM913	-	30S ribosomal protein S10
635	 49.58	0	832189..833370	-	393	56417005	tuf	AM914	-	elongation factor Tu
636	 51.65	0	833746..834531	+	261	56417006	-	AM915	-	hypothetical protein
637	 50.29	0	834518..835195	+	225	56417007	cmk	AM916	-	cytidylate kinase
638	 50.06	0	835260..836939	+	559	56417008	rpsA	AM917	-	30S ribosomal protein S1
639	 51.59	0	836943..837824	+	293	56417009	sppA	AM918	-	protease IV
640	 50.20	0	838073..838570	+	165	56417010	-	AM919	-	hypothetical protein
641	 57.99	+2	838571..839008	+	145	56417011	-	AM920	-	hypothetical protein
642	 56.08	+2	839324..840277	+	317	56417012	-	AM921	-	hypothetical protein
643	 50.24	0	840581..841633	+	350	56417013	hemH	AM922	-	ferrochelatase
644	 49.11	0	841636..842700	-	354	56417014	-	AM923	-	hypothetical protein
645	 41.28	-2	842956..843282	-	108	56417015	-	AM924	-	hypothetical protein
646	 48.48	0	843819..844742	-	307	56417016	hflK	AM925	-	HFLK protein
647	 50.18	0	844805..845653	-	282	56417017	-	AM926	-	hypothetical protein
648	 47.85	0	845751..848354	+	867	56417018	-	AM927	-	hypothetical protein
649	 51.52	0	848679..849662	-	327	56417019	qor	AM928	-	quinone oxidoreductase
650	 52.06	0	849768..852170	-	800	56417020	-	AM929	-	hypothetical protein
651	 49.94	0	852504..853310	+	268	56417021	folP	AM931	-	dihydropteroate synthase
652	 51.07	0	853769..857077	+	1102	56417022	carB	AM933	-	carbamoyl phosphate synthase large subunit
653	 51.15	0	858293..858685	-	130	56417023	-	AM936	-	hypothetical protein
654	 52.27	0	858850..860238	-	462	56417024	fumC	AM937	-	fumarate hydratase
655	 48.23	0	860408..861058	+	216	56417025	-	AM938	-	hypothetical protein
656	 51.87	0	861059..862423	+	454	56417026	pyrC	AM939	-	dihydroorotase
657	 49.52	0	862557..863915	-	452	56417027	glmM	AM940	-	phosphoglucosamine mutase
658	 50.70	0	863952..864596	-	214	56417028	lipB	AM941	-	lipoyltransferase
659	 45.02	-1	864687..865379	-	230	56417029	radC	AM942	-	DNA repair protein
660	 48.42	0	865600..865884	+	94	161544983	groES	AM943	-	co-chaperonin GroES
661	 49.94	0	865932..867581	+	549	56417031	groEL	AM944	-	chaperonin GroEL
662	 50.55	0	868196..868927	-	243	56417032	-	AM947	-	hypothetical protein
663	 48.87	0	869149..871767	+	872	56417033	clpB	AM949	-	ATP-dependent Clp protease ATP-binding subunit
664	 48.80	0	871879..873540	-	553	56417034	-	AM950	-	hypothetical protein
665	 54.18	+1	873771..874763	-	330	56417035	-	AM952	-	hypothetical protein
666	 51.15	0	874868..875608	-	246	56417036	-	AM953	-	hypothetical protein
667	 48.62	0	875813..876211	+	132	56417037	-	AM955	-	hypothetical protein
668	 52.34	0	876183..877787	+	534	56417038	pepA	AM956	-	leucyl aminopeptidase
669	 50.08	0	877803..878447	+	214	56417039	-	AM957	-	hypothetical protein
670	 49.25	0	878594..880069	-	491	56417040	-	AM959	-	hypothetical protein
671	 50.57	0	880211..880993	-	260	56417041	purQ	AM960	-	phosphoribosylformylglycinamidine synthase
672	 52.72	+1	881074..882987	+	637	56417042	gidA	AM961	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
673	 52.48	0	883300..884265	-	321	56417043	glpX	AM964	-	fructose 1,6-bisphosphatase II
674	 51.71	0	884352..885053	+	233	56417044	-	AM965	-	hypothetical protein
675	 44.52	-1	885213..885668	+	151	56417045	-	AM967	-	hypothetical protein
676	 50.88	0	885769..886053	+	94	56417046	-	AM968	-	hypothetical protein
677	 51.38	0	886040..887014	+	324	56417047	bioB	AM969	-	biotin synthase
678	 48.84	0	887742..890792	+	1016	56417048	purL	AM973	-	phosphoribosylformylglycinamidine synthase
679	 53.62	+1	890823..891029	+	68	56417049	-	AM974	-	hypothetical protein
680	 50.64	0	891166..891870	+	234	56417050	-	AM975	-	hypothetical protein
681	 54.63	+1	891926..892141	-	71	56417051	-	AM976	-	hypothetical protein
682	 52.82	+1	892150..892698	-	182	56417052	-	AM977	-	hypothetical protein
683	 48.01	0	892797..894077	-	426	56417053	-	AM979	-	hypothetical protein
684	 48.78	0	894252..894620	+	122	56417054	-	AM980	-	hypothetical protein
685	 49.49	0	894865..895755	+	296	56417055	-	AM981	-	hypothetical protein
686	 49.54	0	895993..896646	-	217	56417056	-	AM982	-	hypothetical protein
687	 51.23	0	896760..897815	+	351	56417057	purM	AM983	-	phosphoribosylaminoimidazole synthetase
688	 49.84	0	897807..898757	-	316	56417058	xerC	AM984	-	integrase/recombinase ripx
689	 53.16	+1	898926..900095	+	389	56417059	gpsA	AM985	-	gylcerol-3-phosphate dehydrogenase
690	 53.07	+1	900092..900547	+	151	56417060	omp15	AM987	-	outer membrane protein 15
691	 44.27	-1	900783..901157	-	124	56417061	orfX	AM989	-	ORF X
692	 44.23	-1	901157..901468	-	103	56417062	orfY	AM990	-	ORF Y
693	 45.63	-1	901852..903234	-	460	56417063	rho	AM992	-	transcription termination factor Rho
694	 50.15	0	903504..903842	-	112	56417064	-	AM997	-	hypothetical protein
695	 52.11	0	904024..904593	+	189	56417065	hslV	AM998	-	ATP-dependent protease peptidase subunit
696	 48.38	0	904590..906038	+	482	56417066	hslU	AM999	-	ATP-dependent protease ATP-binding subunit
697	 51.34	0	906042..906785	+	247	56417067	ubiE	AM1000	-	ubiquinone/menaquinone biosynthesis methyltransferase
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.