IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
539	 51.77	0	723470..724885	-	471	56416909	lpdA	AM797	-	dihydrolipoamide dehydrogenase
540	 52.05	0	724893..726062	-	389	56416910	-	AM798	-	hypothetical protein
541	 47.46	0	726383..727699	+	438	56416911	engA	AM801	-	GTP-binding protein EngA
542	 50.76	0	727807..729384	-	525	56416912	yibO	AM802	-	phosphoglyceromutase
543	 49.95	0	729593..730693	+	366	161544986	carA	AM803	-	carbamoyl phosphate synthase small subunit
544	 51.90	0	730871..731899	+	342	56416914	ispH	AM804	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
545	 54.73	+1	732101..732544	+	147	56416915	dut	AM805	-	deoxyuridine 5'triphosphate nucleotidohydrolase
546	 52.37	0	732591..733982	-	463	56416916	murF	AM807	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
547	 48.38	0	734205..734822	+	205	56416917	-	AM809	-	hypothetical protein
548	 51.24	0	734837..739900	-	1687	56416918	-	AM810	-	hypothetical protein
549	 49.54	0	739863..743978	-	1371	56416919	-	AM811	-	hypothetical protein
550	 47.06	0	743990..747049	-	1019	56416920	-	AM812	-	hypothetical protein
551	 50.02	0	747102..749738	-	878	56416921	virB6	AM813	-	VirB6 protein
552	 47.28	0	749731..752139	-	802	56416922	virB4	AM814	-	VirB4 protein
553	 45.12	-1	752143..752439	-	98	56416923	virB3	AM815	-	VirB3 protein
554	 45.54	-1	752533..753204	-	223	56416924	sodB	AM816	-	Fe superoxide dismutase
555	 46.10	-1	753368..754753	+	461	56416925	pstA	AM818	-	phosphate ABC transporter
556	 53.82	+1	754722..754970	-	82	56416926	-	AM819	-	hypothetical protein
557	 50.53	0	754976..755917	-	313	56416927	lipA	AM820	-	lipoyl synthase
558	 51.76	0	756603..758225	-	540	56416928	-	AM821	-	hypothetical protein
559	 48.66	0	758458..762411	-	1317	56416929	-	AM823	-	hypothetical protein
560	 48.27	0	762503..764491	-	662	56416930	pycA	AM824	-	propionyl-CoA carboxylase alpha chain precursor
561	 50.20	0	764861..765844	+	327	56416931	sfhB	AM825	-	sfhb-like protein
562	 47.65	0	765847..766251	-	134	56416932	rpmB	AM826	-	50S ribosomal protein L28
563	 50.08	0	766755..768743	-	662	56416933	priA	AM827	-	primosomal protein N'
564	 48.81	0	768961..769884	-	307	56416934	-	AM829	-	hypothetical protein
565	 50.00	0	770010..770813	-	267	56416935	-	AM830	-	hypothetical protein
566	 49.50	0	770910..772622	-	570	56416936	-	AM832	-	hypothetical protein
567	 46.02	-1	772749..773276	-	175	56416937	-	AM833	-	hypothetical protein
568	 47.85	0	773664..774524	-	286	56416938	-	AM836	-	hypothetical protein
569	 48.88	0	774500..775393	-	297	56416939	era	AM837	-	GTP-binding protein Era
570	 47.49	0	775488..776843	-	451	56416940	ffh	AM839	-	signal recognition particle protein
571	 48.61	0	776836..778386	-	516	56416941	nuoL3	AM840	-	putative monovalent cation/H+ antiporter subunit D
572	 50.73	0	778461..778937	-	158	56416942	-	AM841	-	hypothetical protein
573	 49.02	0	779164..781101	-	645	56416943	dnaK	AM842	-	DNAK protein
574	 48.66	0	781301..783160	-	619	56416944	rne	AM844	-	ribonuclease E
575	 49.54	0	783255..783581	-	108	56416945	-	AM846	-	putative monovalent cation/H+ antiporter subunit C
576	 46.54	-1	783668..784144	-	158	56416946	-	AM847	-	putative monovalent cation/H+ antiporter subunit B
577	 52.11	0	784101..784670	-	189	56416947	-	AM848	-	putative monovalent cation/H+ antiporter subunit B
578	 49.00	0	784671..784970	-	99	56416948	-	AM849	-	putative monovalent cation/H+ antiporter subunit G
579	 45.49	-1	784977..785231	-	84	56416949	-	AM851	-	putative monovalent cation/H+ antiporter subunit F
580	 50.96	0	785249..787234	-	661	56416950	tktA	AM852	-	transketolase
581	 50.16	0	787250..788854	-	534	56416951	-	AM853	-	hypothetical protein
582	 52.74	+1	789000..789710	+	236	56416952	-	AM854	-	hypothetical protein
583	 51.94	0	790004..791341	+	445	56416953	purA	AM856	-	adenylosuccinate synthetase
584	 47.72	0	791345..792331	-	328	56416954	-	AM858	-	hypothetical protein
585	 50.51	0	792369..792863	-	164	56416955	-	AM859	-	hypothetical protein
586	 48.93	0	792908..794728	-	606	56416956	nrdA	AM860	-	ribonucleotide-diphosphate reductase subunit alpha
587	 52.28	0	795296..796171	+	291	56416957	ispA	AM861	-	geranyltranstransferase (farnesyl-diphosphate synthase)
588	 52.84	+1	796220..797116	+	298	56416958	-	AM862	-	hypothetical protein
589	 50.20	0	797146..798135	-	329	56416959	thiO	AM863	-	thiamine biosynthesis oxidoreductase
590	 47.76	0	798415..799890	-	491	56416960	dnaB	AM865	-	replicative DNA helicase
591	 49.93	0	799944..800618	-	224	56416961	-	AM867	-	hypothetical protein
592	 52.47	0	800782..801246	+	154	56416962	ssnA	AM868	-	cytosine deaminase
593	 50.46	0	801378..802346	-	322	56416963	fabH	AM869	-	3-oxoacyl-[acyl-carrier-protein] synthase III
594	 51.63	0	802346..803389	-	347	56416964	plsX	AM870	-	putative glycerol-3-phosphate acyltransferase PlsX
595	 51.41	0	803389..803565	-	58	56416965	rpmF	AM870.5	-	50S ribosomal protein L32
596	 49.88	0	803779..805041	+	420	56416966	tgt	AM871	-	queuine tRNA-ribosyltransferase
597	 49.09	0	805237..806061	-	274	56416967	pstB	AM872	-	phosphate ABC transporter
598	 51.25	0	806001..806843	-	280	56416968	dapB	AM873	-	dihydrodipicolinate reductase
599	 44.86	-1	806956..807441	-	161	56416969	-	AM875	-	hypothetical protein
600	 48.22	0	807454..808353	-	299	56416970	ubiA	AM876	-	prenyltransferase
601	 51.11	0	808427..809686	-	419	56416971	aaaP	AM878	-	appendage-associated protein
602	 51.01	0	809841..811124	-	427	56416972	-	AM879	-	hypothetical protein
603	 51.48	0	811267..812109	-	280	56416973	-	AM880	-	hypothetical protein
604	 57.04	+2	812267..812401	+	44	56416974	rpmH	AM880.5	-	50S ribosomal protein L34
605	 53.89	+1	812407..812766	+	119	56416975	-	AM881	-	hypothetical protein
606	 50.30	0	812779..814098	+	439	56416976	-	AM882	-	hypothetical protein
607	 49.98	0	814157..816403	-	748	56416977	-	AM884	-	hypothetical protein
608	 50.76	0	816685..819048	-	787	56416978	pheT	AM885	-	phenylalanyl-tRNA synthetase beta chain
609	 52.35	0	819052..819456	-	134	56416979	rplQ	AM886	-	50S ribosomal protein L17
610	 50.32	0	819497..820597	-	366	56416980	rpoA	AM887	-	DNA-directed RNA polymerase subunit alpha
611	 53.60	+1	820618..820992	-	124	161544985	rpsK	AM888	-	30S ribosomal protein S11
612	 51.34	0	821002..821373	-	123	56416982	rpsM	AM890	-	30S ribosomal protein S13
613	 47.77	0	821437..822087	-	216	56416983	adk	AM891	-	adenylate kinase
614	 46.16	-1	822069..823370	-	433	56416984	secY	AM892	-	preprotein translocase subunit SecY
615	 51.47	0	823394..823834	-	146	56416985	rplO	AM893	-	50S ribosomal protein L15
616	 48.38	0	823848..824372	-	174	56416986	rpsE	AM894	-	30S ribosomal protein S5
617	 51.32	0	824383..824760	-	125	56416987	rplR	AM895	-	50S ribosomal protein L18
618	 50.00	0	824762..825307	-	181	56416988	rplF	AM896	-	50S ribosomal protein L6
619	 47.62	0	825319..825717	-	132	56416989	rpsH	AM897	-	30S ribosomal protein S8
620	 53.01	+1	825735..825983	-	82	56416990	rpsN	AM898	-	small ribosomal protein S14
621	 47.41	0	826052..826591	-	179	56416991	rplE	AM899	-	50S ribosomal protein L5
622	 49.37	0	826592..826909	-	105	56416992	rplX	AM900	-	50S ribosomal protein L24
623	 50.00	0	826906..827265	-	119	56416993	rplN	AM901	-	50S ribosomal protein L14
624	 47.44	0	827278..827511	-	77	56416994	rpsQ	AM903	-	30S ribosomal protein S17
625	 51.21	0	827501..827707	-	68	56416995	rpmC	AM904	-	50S ribosomal protein L29
626	 50.12	0	827715..828131	-	138	161544984	rplP	AM905	-	50S ribosomal protein L16
627	 48.74	0	828140..828775	-	211	56416997	rpsC	AM906	-	30S ribosomal protein S3
628	 50.44	0	828779..829117	-	112	56416998	rplV	AM907	-	50S ribosomal protein L22
629	 49.29	0	829121..829402	-	93	56416999	rpsS	AM908	-	30S ribosomal protein S19
630	 53.84	+1	829408..830241	-	277	56417000	rplB	AM909	-	50S ribosomal protein L2
631	 51.46	0	830238..830546	-	102	56417001	rplW	AM910	-	50S ribosomal protein L23
632	 48.64	0	830521..831147	-	208	56417002	rplD	AM911	-	50S ribosomal protein L4
633	 54.22	+1	831165..831863	-	232	56417003	rplC	AM912	-	50S ribosomal protein L3
634	 48.43	0	831865..832182	-	105	56417004	rpsJ	AM913	-	30S ribosomal protein S10
635	 49.58	0	832189..833370	-	393	56417005	tuf	AM914	-	elongation factor Tu
636	 51.65	0	833746..834531	+	261	56417006	-	AM915	-	hypothetical protein
637	 50.29	0	834518..835195	+	225	56417007	cmk	AM916	-	cytidylate kinase
638	 50.06	0	835260..836939	+	559	56417008	rpsA	AM917	-	30S ribosomal protein S1
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.