IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
501	 55.34	+2	680569..681945	-	458	56416871	-	AM742	-	hypothetical protein
502	 50.38	0	682043..683233	-	396	56416872	dxr	AM743	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
503	 50.76	0	683247..684692	-	481	56416873	nuoN1	AM744	-	NADH dehydrogenase chain N
504	 49.11	0	684695..686158	-	487	56416874	nuoM	AM745	-	NADH dehydrogenase chain M
505	 48.00	0	686155..688056	-	633	56416875	nuoL	AM746	-	NADH dehydrogenase chain L
506	 49.54	0	688124..688450	-	108	56416876	nuoK	AM747	-	NADH dehydrogenase chain K
507	 51.08	0	688499..689101	-	200	56416877	nuoJ	AM748	-	NADH dehydrogenase chain J
508	 51.74	0	689290..690582	-	430	56416878	nuoF	AM750	-	NADH dehydrogenase I subunit F
509	 50.00	0	690661..691824	-	387	56416879	fadB	AM752	-	3-hydroxyacyl-COA dehydrogenase
510	 51.25	0	691830..692270	-	146	56416880	-	AM753	-	hypothetical protein
511	 50.00	0	692470..693387	+	305	56416881	miaA	AM755	-	tRNA isopentenylpyrophosphate transferase
512	 49.21	0	693433..694188	-	251	56416882	-	AM757	-	hypothetical protein
513	 46.37	-1	694352..695701	-	449	56416883	-	AM758	-	hypothetical protein
514	 48.76	0	695774..697063	+	429	161544988	serS	AM759	-	seryl-tRNA synthetase
515	 49.08	0	697239..697784	-	181	56416885	-	AM760	-	hypothetical protein
516	 46.19	-1	698064..698942	-	292	56416886	hemF	AM762	-	coproporphyrinogen III oxidase
517	 48.83	0	699113..700093	-	326	56416887	agk	AM763	-	acetylglutamate kinase
518	 47.09	0	700038..700655	-	205	56416888	-	AM764	-	GTPase EngB
519	 47.96	0	700982..702061	+	359	56416889	prfA	AM767	-	peptide chain release factor 1
520	 49.68	0	702299..703846	-	515	56416890	pccB	AM769	-	propionyl-COA carboxylase beta chain precursor
521	 50.12	0	704127..704936	-	269	56416891	fpg	AM771	-	formamidopyrimidine-DNA glycosylase
522	 48.15	0	705141..706598	-	485	56416892	-	AM773	-	hypothetical protein
523	 47.84	0	706535..708085	+	516	56416893	gltX2	AM775	-	glutamyl-tRNA synthetase
524	 44.71	-1	708090..708344	+	84	56416894	-	AM776	-	hypothetical protein
525	 48.12	0	708764..710359	-	531	56416895	-	AM778	-	hypothetical protein
526	 52.86	+1	710794..712386	-	530	56416896	-	AM779	-	hypothetical protein
527	 53.10	+1	712414..714093	-	559	56416897	-	AM780	-	hypothetical protein
528	 51.31	0	714379..715140	-	253	56416898	petC	AM781	-	cytochrome c1, heme protein precursor
529	 49.06	0	715141..716361	-	406	56416899	petB	AM783	-	cytochrome B
530	 53.33	+1	716373..716897	-	174	56416900	petA	AM784	-	cytochrome B6-F complex iron-sulfur subunit
531	 48.39	0	717206..717982	-	258	56416901	-	AM788	-	hypothetical protein
532	 47.01	0	718246..719049	-	267	56416902	znuB	AM789	-	zinc ABC transporter, permease protein
533	 51.41	0	719055..719408	-	117	56416903	-	AM790	-	hypothetical protein
534	 51.83	0	719430..720305	-	291	56416904	tsf	AM791	-	elongation factor Ts
535	 49.39	0	720341..721324	-	327	161544987	rpsB	AM792	-	30S ribosomal protein S2
536	 49.24	0	721473..722063	-	196	56416906	maf	AM793	-	maf protein
537	 46.43	-1	722057..722392	-	111	56416907	infA	AM795	-	translation initiation factor IF-1
538	 50.81	0	722389..723504	-	371	56416908	-	AM796	-	hypothetical protein
539	 51.77	0	723470..724885	-	471	56416909	lpdA	AM797	-	dihydrolipoamide dehydrogenase
540	 52.05	0	724893..726062	-	389	56416910	-	AM798	-	hypothetical protein
541	 47.46	0	726383..727699	+	438	56416911	engA	AM801	-	GTP-binding protein EngA
542	 50.76	0	727807..729384	-	525	56416912	yibO	AM802	-	phosphoglyceromutase
543	 49.95	0	729593..730693	+	366	161544986	carA	AM803	-	carbamoyl phosphate synthase small subunit
544	 51.90	0	730871..731899	+	342	56416914	ispH	AM804	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
545	 54.73	+1	732101..732544	+	147	56416915	dut	AM805	-	deoxyuridine 5'triphosphate nucleotidohydrolase
546	 52.37	0	732591..733982	-	463	56416916	murF	AM807	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
547	 48.38	0	734205..734822	+	205	56416917	-	AM809	-	hypothetical protein
548	 51.24	0	734837..739900	-	1687	56416918	-	AM810	-	hypothetical protein
549	 49.54	0	739863..743978	-	1371	56416919	-	AM811	-	hypothetical protein
550	 47.06	0	743990..747049	-	1019	56416920	-	AM812	-	hypothetical protein
551	 50.02	0	747102..749738	-	878	56416921	virB6	AM813	-	VirB6 protein
552	 47.28	0	749731..752139	-	802	56416922	virB4	AM814	-	VirB4 protein
553	 45.12	-1	752143..752439	-	98	56416923	virB3	AM815	-	VirB3 protein
554	 45.54	-1	752533..753204	-	223	56416924	sodB	AM816	-	Fe superoxide dismutase
555	 46.10	-1	753368..754753	+	461	56416925	pstA	AM818	-	phosphate ABC transporter
556	 53.82	+1	754722..754970	-	82	56416926	-	AM819	-	hypothetical protein
557	 50.53	0	754976..755917	-	313	56416927	lipA	AM820	-	lipoyl synthase
558	 51.76	0	756603..758225	-	540	56416928	-	AM821	-	hypothetical protein
559	 48.66	0	758458..762411	-	1317	56416929	-	AM823	-	hypothetical protein
560	 48.27	0	762503..764491	-	662	56416930	pycA	AM824	-	propionyl-CoA carboxylase alpha chain precursor
561	 50.20	0	764861..765844	+	327	56416931	sfhB	AM825	-	sfhb-like protein
562	 47.65	0	765847..766251	-	134	56416932	rpmB	AM826	-	50S ribosomal protein L28
563	 50.08	0	766755..768743	-	662	56416933	priA	AM827	-	primosomal protein N'
564	 48.81	0	768961..769884	-	307	56416934	-	AM829	-	hypothetical protein
565	 50.00	0	770010..770813	-	267	56416935	-	AM830	-	hypothetical protein
566	 49.50	0	770910..772622	-	570	56416936	-	AM832	-	hypothetical protein
567	 46.02	-1	772749..773276	-	175	56416937	-	AM833	-	hypothetical protein
568	 47.85	0	773664..774524	-	286	56416938	-	AM836	-	hypothetical protein
569	 48.88	0	774500..775393	-	297	56416939	era	AM837	-	GTP-binding protein Era
570	 47.49	0	775488..776843	-	451	56416940	ffh	AM839	-	signal recognition particle protein
571	 48.61	0	776836..778386	-	516	56416941	nuoL3	AM840	-	putative monovalent cation/H+ antiporter subunit D
572	 50.73	0	778461..778937	-	158	56416942	-	AM841	-	hypothetical protein
573	 49.02	0	779164..781101	-	645	56416943	dnaK	AM842	-	DNAK protein
574	 48.66	0	781301..783160	-	619	56416944	rne	AM844	-	ribonuclease E
575	 49.54	0	783255..783581	-	108	56416945	-	AM846	-	putative monovalent cation/H+ antiporter subunit C
576	 46.54	-1	783668..784144	-	158	56416946	-	AM847	-	putative monovalent cation/H+ antiporter subunit B
577	 52.11	0	784101..784670	-	189	56416947	-	AM848	-	putative monovalent cation/H+ antiporter subunit B
578	 49.00	0	784671..784970	-	99	56416948	-	AM849	-	putative monovalent cation/H+ antiporter subunit G
579	 45.49	-1	784977..785231	-	84	56416949	-	AM851	-	putative monovalent cation/H+ antiporter subunit F
580	 50.96	0	785249..787234	-	661	56416950	tktA	AM852	-	transketolase
581	 50.16	0	787250..788854	-	534	56416951	-	AM853	-	hypothetical protein
582	 52.74	+1	789000..789710	+	236	56416952	-	AM854	-	hypothetical protein
583	 51.94	0	790004..791341	+	445	56416953	purA	AM856	-	adenylosuccinate synthetase
584	 47.72	0	791345..792331	-	328	56416954	-	AM858	-	hypothetical protein
585	 50.51	0	792369..792863	-	164	56416955	-	AM859	-	hypothetical protein
586	 48.93	0	792908..794728	-	606	56416956	nrdA	AM860	-	ribonucleotide-diphosphate reductase subunit alpha
587	 52.28	0	795296..796171	+	291	56416957	ispA	AM861	-	geranyltranstransferase (farnesyl-diphosphate synthase)
588	 52.84	+1	796220..797116	+	298	56416958	-	AM862	-	hypothetical protein
589	 50.20	0	797146..798135	-	329	56416959	thiO	AM863	-	thiamine biosynthesis oxidoreductase
590	 47.76	0	798415..799890	-	491	56416960	dnaB	AM865	-	replicative DNA helicase
591	 49.93	0	799944..800618	-	224	56416961	-	AM867	-	hypothetical protein
592	 52.47	0	800782..801246	+	154	56416962	ssnA	AM868	-	cytosine deaminase
593	 50.46	0	801378..802346	-	322	56416963	fabH	AM869	-	3-oxoacyl-[acyl-carrier-protein] synthase III
594	 51.63	0	802346..803389	-	347	56416964	plsX	AM870	-	putative glycerol-3-phosphate acyltransferase PlsX
595	 51.41	0	803389..803565	-	58	56416965	rpmF	AM870.5	-	50S ribosomal protein L32
596	 49.88	0	803779..805041	+	420	56416966	tgt	AM871	-	queuine tRNA-ribosyltransferase
597	 49.09	0	805237..806061	-	274	56416967	pstB	AM872	-	phosphate ABC transporter
598	 51.25	0	806001..806843	-	280	56416968	dapB	AM873	-	dihydrodipicolinate reductase
599	 44.86	-1	806956..807441	-	161	56416969	-	AM875	-	hypothetical protein
600	 48.22	0	807454..808353	-	299	56416970	ubiA	AM876	-	prenyltransferase
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.