IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
453	 48.69	0	599013..600614	+	533	56416823	lysK	AM658	-	lysyl-tRNA synthetase
454	 50.58	0	600760..601101	+	113	56416824	-	AM660	-	hypothetical protein
455	 49.73	0	601147..601890	-	247	56416825	truA	AM661	-	tRNA pseudouridine synthase A
456	 48.49	0	601887..602783	-	298	56416826	pyrB	AM662	-	aspartate carbamoyltransferase catalytic subunit
457	 48.64	0	602946..603605	-	219	56416827	-	AM664	-	putative translaldolase
458	 49.10	0	603602..603988	-	128	56416828	atpC	AM665	-	ATP synthase epsilon chain
459	 52.02	0	604058..605518	-	486	56416829	atpD	AM666	-	F0F1 ATP synthase subunit beta
460	 46.01	-1	605894..607345	+	483	56416830	mgtE	AM668	-	magnesium transporter
461	 49.67	0	607824..608429	+	201	56416831	ftsJ	AM669	-	cell division protein
462	 52.76	+1	608913..609782	+	289	56416832	-	AM670	-	hypothetical protein
463	 49.47	0	609843..610784	+	313	56416833	-	AM671	-	hypothetical protein
464	 48.78	0	611370..612968	+	532	56416834	-	AM673	-	hypothetical protein
465	 49.77	0	613573..616785	+	1070	56416835	-	AM675	-	hypothetical protein
466	 49.28	0	617089..618480	-	463	56416836	-	AM676	-	hypothetical protein
467	 49.31	0	618649..620388	-	579	56416837	argS	AM678	-	arginyl-tRNA synthetase
468	 49.79	0	620653..621369	+	238	56416838	recO	AM680	-	DNA repair protein RecO
469	 52.45	0	621444..622055	+	203	56416839	-	AM681	-	hypothetical protein
470	 55.07	+1	622067..622273	+	68	56416840	-	AM682	-	hypothetical protein
471	 52.59	+1	622240..623646	-	468	56416841	-	AM683	-	hypothetical protein
472	 48.40	0	623938..627243	-	1101	56416842	ileS	AM684	-	isoleucyl-tRNA synthetase
473	 46.58	-1	627607..628089	+	160	56416843	-	AM685	-	hypothetical protein
474	 52.75	+1	628055..628837	+	260	56416844	-	AM686	-	hypothetical protein
475	 53.70	+1	628841..629110	-	89	56416845	-	AM688	-	hypothetical protein
476	 50.77	0	629256..632300	+	1014	56416846	-	AM689	-	hypothetical protein
477	 51.43	0	632725..633741	-	338	56416847	prfB	AM692	-	peptide chain release factor 2
478	 49.14	0	634031..634783	-	250	56416848	-	AM694	-	hypothetical protein
479	 51.50	0	635162..636631	-	489	56416849	gatA	AM698	-	glutamyl-tRNA amidotransferase chain A
480	 49.81	0	636928..638220	+	430	56416850	folC	AM699	-	folylpolyglutamate synthase
481	 51.10	0	638378..639289	+	303	56416851	hemC	AM700	-	porphobilinogen deaminase
482	 51.44	0	639264..640163	+	299	56416852	murB	AM701	-	UDP-N-acetylenolpyruvoylglucosamine reductase
483	 53.12	+1	640456..644619	+	1387	56416853	ankA	AM705	-	ankyrin
484	 50.52	0	645424..645906	-	160	56416854	nuoI	AM707	-	NADH dehydrogenase subunit I
485	 46.53	-1	645922..646641	-	239	56416855	lepB	AM708	-	signal peptidase
486	 48.53	0	646652..647092	-	146	56416856	-	AM709	-	hypothetical protein
487	 52.16	0	647660..658138	+	3492	56416857	-	AM712	-	hypothetical protein
488	 43.40	-2	658530..658817	-	95	56416858	-	AM715	-	hypothetical protein
489	 44.35	-1	659399..659770	-	123	56416859	orfX	AM717	-	ORF X
490	 47.44	0	662843..663076	+	77	56416860	orfY	AM721	-	ORF Y
491	 45.36	-1	663149..663547	+	132	56416861	orfX	AM723	-	ORF X
492	 52.15	0	664842..666701	-	619	56416862	typA	AM730	-	GTP-binding protein
493	 46.59	-1	666756..669101	-	781	56416863	clpA	AM731	-	ATP-dependent Clp protease ATP-binding subunit
494	 43.56	-2	669205..669918	+	237	56416864	terC	AM733	-	membrane protein
495	 46.05	-1	670127..670480	-	117	56416865	rbfA	AM734	-	ribosome-binding factor A
496	 51.50	0	670477..672975	-	832	56416866	infB	AM735	-	translation initiation factor IF-2
497	 50.13	0	672991..674538	-	515	56416867	nusA	AM736	-	transcription elongation factor NusA
498	 48.01	0	675050..678163	-	1037	56416868	acrD	AM738	-	acriflavin resistance protein D
499	 46.62	-1	678393..679175	-	260	56416869	tatC	AM740	-	Sec-independent protein translocase protein
500	 50.12	0	679273..680541	-	422	56416870	ispG	AM741	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
501	 55.34	+2	680569..681945	-	458	56416871	-	AM742	-	hypothetical protein
502	 50.38	0	682043..683233	-	396	56416872	dxr	AM743	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
503	 50.76	0	683247..684692	-	481	56416873	nuoN1	AM744	-	NADH dehydrogenase chain N
504	 49.11	0	684695..686158	-	487	56416874	nuoM	AM745	-	NADH dehydrogenase chain M
505	 48.00	0	686155..688056	-	633	56416875	nuoL	AM746	-	NADH dehydrogenase chain L
506	 49.54	0	688124..688450	-	108	56416876	nuoK	AM747	-	NADH dehydrogenase chain K
507	 51.08	0	688499..689101	-	200	56416877	nuoJ	AM748	-	NADH dehydrogenase chain J
508	 51.74	0	689290..690582	-	430	56416878	nuoF	AM750	-	NADH dehydrogenase I subunit F
509	 50.00	0	690661..691824	-	387	56416879	fadB	AM752	-	3-hydroxyacyl-COA dehydrogenase
510	 51.25	0	691830..692270	-	146	56416880	-	AM753	-	hypothetical protein
511	 50.00	0	692470..693387	+	305	56416881	miaA	AM755	-	tRNA isopentenylpyrophosphate transferase
512	 49.21	0	693433..694188	-	251	56416882	-	AM757	-	hypothetical protein
513	 46.37	-1	694352..695701	-	449	56416883	-	AM758	-	hypothetical protein
514	 48.76	0	695774..697063	+	429	161544988	serS	AM759	-	seryl-tRNA synthetase
515	 49.08	0	697239..697784	-	181	56416885	-	AM760	-	hypothetical protein
516	 46.19	-1	698064..698942	-	292	56416886	hemF	AM762	-	coproporphyrinogen III oxidase
517	 48.83	0	699113..700093	-	326	56416887	agk	AM763	-	acetylglutamate kinase
518	 47.09	0	700038..700655	-	205	56416888	-	AM764	-	GTPase EngB
519	 47.96	0	700982..702061	+	359	56416889	prfA	AM767	-	peptide chain release factor 1
520	 49.68	0	702299..703846	-	515	56416890	pccB	AM769	-	propionyl-COA carboxylase beta chain precursor
521	 50.12	0	704127..704936	-	269	56416891	fpg	AM771	-	formamidopyrimidine-DNA glycosylase
522	 48.15	0	705141..706598	-	485	56416892	-	AM773	-	hypothetical protein
523	 47.84	0	706535..708085	+	516	56416893	gltX2	AM775	-	glutamyl-tRNA synthetase
524	 44.71	-1	708090..708344	+	84	56416894	-	AM776	-	hypothetical protein
525	 48.12	0	708764..710359	-	531	56416895	-	AM778	-	hypothetical protein
526	 52.86	+1	710794..712386	-	530	56416896	-	AM779	-	hypothetical protein
527	 53.10	+1	712414..714093	-	559	56416897	-	AM780	-	hypothetical protein
528	 51.31	0	714379..715140	-	253	56416898	petC	AM781	-	cytochrome c1, heme protein precursor
529	 49.06	0	715141..716361	-	406	56416899	petB	AM783	-	cytochrome B
530	 53.33	+1	716373..716897	-	174	56416900	petA	AM784	-	cytochrome B6-F complex iron-sulfur subunit
531	 48.39	0	717206..717982	-	258	56416901	-	AM788	-	hypothetical protein
532	 47.01	0	718246..719049	-	267	56416902	znuB	AM789	-	zinc ABC transporter, permease protein
533	 51.41	0	719055..719408	-	117	56416903	-	AM790	-	hypothetical protein
534	 51.83	0	719430..720305	-	291	56416904	tsf	AM791	-	elongation factor Ts
535	 49.39	0	720341..721324	-	327	161544987	rpsB	AM792	-	30S ribosomal protein S2
536	 49.24	0	721473..722063	-	196	56416906	maf	AM793	-	maf protein
537	 46.43	-1	722057..722392	-	111	56416907	infA	AM795	-	translation initiation factor IF-1
538	 50.81	0	722389..723504	-	371	56416908	-	AM796	-	hypothetical protein
539	 51.77	0	723470..724885	-	471	56416909	lpdA	AM797	-	dihydrolipoamide dehydrogenase
540	 52.05	0	724893..726062	-	389	56416910	-	AM798	-	hypothetical protein
541	 47.46	0	726383..727699	+	438	56416911	engA	AM801	-	GTP-binding protein EngA
542	 50.76	0	727807..729384	-	525	56416912	yibO	AM802	-	phosphoglyceromutase
543	 49.95	0	729593..730693	+	366	161544986	carA	AM803	-	carbamoyl phosphate synthase small subunit
544	 51.90	0	730871..731899	+	342	56416914	ispH	AM804	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
545	 54.73	+1	732101..732544	+	147	56416915	dut	AM805	-	deoxyuridine 5'triphosphate nucleotidohydrolase
546	 52.37	0	732591..733982	-	463	56416916	murF	AM807	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
547	 48.38	0	734205..734822	+	205	56416917	-	AM809	-	hypothetical protein
548	 51.24	0	734837..739900	-	1687	56416918	-	AM810	-	hypothetical protein
549	 49.54	0	739863..743978	-	1371	56416919	-	AM811	-	hypothetical protein
550	 47.06	0	743990..747049	-	1019	56416920	-	AM812	-	hypothetical protein
551	 50.02	0	747102..749738	-	878	56416921	virB6	AM813	-	VirB6 protein
552	 47.28	0	749731..752139	-	802	56416922	virB4	AM814	-	VirB4 protein
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.