IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
410	 40.83	-2	541381..541500	+	39	56416780	rpmJ	AM593	-	large subunit ribosomal protein L36
411	 51.39	0	541529..541888	+	119	56416781	-	AM594	-	hypothetical protein
412	 53.00	+1	541901..542551	-	216	56416782	-	AM595	-	hypothetical protein
413	 47.62	0	542576..542848	-	90	56416783	rpmA	AM596	-	50S ribosomal protein L27
414	 48.84	0	542852..543154	-	100	161544989	rplU	AM597	-	50S ribosomal protein L21
415	 47.69	0	543637..544932	+	431	56416785	eno	AM600	-	enolase 1 (2-phosphoglycerate dehydratase 1)
416	 47.28	0	544934..545980	+	348	56416786	obgE	AM601	-	GTPase ObgE
417	 45.64	-1	545943..546332	+	129	56416787	-	AM603	-	hypothetical protein
418	 44.75	-1	546503..547378	-	291	56416788	mraW	AM605	-	S-adenosyl-methyltransferase MraW
419	 46.74	-1	547550..548086	-	178	56416789	ygfA	AM606	-	5-formyltetrahydrofolate cyclo-ligase
420	 50.48	0	548370..553613	+	1747	56416790	-	AM612	-	hypothetical protein
421	 43.33	-2	553836..555356	+	506	56416791	-	AM613	-	hypothetical protein
422	 49.47	0	555884..556453	-	189	56416792	-	AM615	-	hypothetical protein
423	 47.41	0	556586..558397	-	603	56416793	-	AM616	-	hypothetical protein
424	 47.41	0	558602..559624	-	340	56416794	trxB2	AM617	-	thioredoxin reductase
425	 45.99	-1	559705..561039	-	444	56416795	pmbA	AM618	-	pmbA protein
426	 46.57	-1	561049..561645	-	198	56416796	folE	AM619	-	GTP cyclohydrolase
427	 48.96	0	561652..562515	-	287	56416797	atpG	AM620	-	ATP synthase gamma chain
428	 50.54	0	562810..564006	+	398	56416798	nuoD	AM623	-	NADH dehydrogenase subunit D
429	 49.02	0	564011..564520	+	169	56416799	nuoE	AM624	-	NADH dehydrogenase subunit E
430	 49.21	0	564510..565208	+	232	56416800	dnaQ	AM625	-	DNA polymerase III epsilon chain
431	 49.27	0	565245..566825	-	526	56416801	-	AM626	-	hypothetical protein
432	 49.45	0	567191..567829	+	212	56416802	-	AM628	-	hypothetical protein
433	 49.00	0	568265..570115	+	616	56416803	-	AM629	-	hypothetical protein
434	 47.00	0	570249..570782	-	177	56416804	-	AM630	-	hypothetical protein
435	 49.14	0	570776..571648	-	290	56416805	rpoH	AM631	-	RNA polymerase sigma-32 factor
436	 43.17	-2	571770..572084	+	104	56416806	-	AM632	-	hypothetical protein
437	 47.97	0	572081..572326	+	81	56416807	-	AM634	-	hypothetical protein
438	 50.03	0	572766..582350	+	3194	56416808	-	AM638	-	hypothetical protein
439	 47.88	0	582496..583554	-	352	56416809	nuoH	AM640	-	NADH dehydrogenase subunit H
440	 50.67	0	583556..585631	-	691	56416810	nuoG	AM641	-	NADH dehydrogenase subunit G
441	 50.46	0	585639..585854	-	71	56416811	-	AM642	-	hypothetical protein
442	 49.03	0	586035..588416	-	793	56416812	gyrB2	AM644	-	DNA gyrase subunit B
443	 50.66	0	588750..589355	+	201	56416813	ubiX	AM645	-	3-octaprenyl-4-hydroxybenzoate carboxyl-lyase
444	 53.76	+1	589454..589879	-	141	56416814	-	AM647	-	hypothetical protein
445	 47.96	0	590379..591602	-	407	56416815	-	AM649	-	hypothetical protein
446	 46.33	-1	591574..591927	-	117	56416816	adx1	AM650	-	ferredoxin [2Fe-2S] adrenodoxin-like precursor adx1
447	 52.02	0	591953..593761	-	602	56416817	hscA	AM651	-	heat shock protein
448	 44.08	-1	593749..594297	-	182	56416818	hscB	AM652	-	chaperone protein
449	 49.00	0	594578..594979	-	133	56416819	nifU	AM654	-	scaffold protein
450	 50.53	0	594988..596214	-	408	56416820	iscS	AM655	-	cysteine desulfurase
451	 50.03	0	596247..597809	-	520	56416821	-	AM656	-	hypothetical protein
452	 50.35	0	598007..598711	+	234	56416822	-	AM657	-	hypothetical protein
453	 48.69	0	599013..600614	+	533	56416823	lysK	AM658	-	lysyl-tRNA synthetase
454	 50.58	0	600760..601101	+	113	56416824	-	AM660	-	hypothetical protein
455	 49.73	0	601147..601890	-	247	56416825	truA	AM661	-	tRNA pseudouridine synthase A
456	 48.49	0	601887..602783	-	298	56416826	pyrB	AM662	-	aspartate carbamoyltransferase catalytic subunit
457	 48.64	0	602946..603605	-	219	56416827	-	AM664	-	putative translaldolase
458	 49.10	0	603602..603988	-	128	56416828	atpC	AM665	-	ATP synthase epsilon chain
459	 52.02	0	604058..605518	-	486	56416829	atpD	AM666	-	F0F1 ATP synthase subunit beta
460	 46.01	-1	605894..607345	+	483	56416830	mgtE	AM668	-	magnesium transporter
461	 49.67	0	607824..608429	+	201	56416831	ftsJ	AM669	-	cell division protein
462	 52.76	+1	608913..609782	+	289	56416832	-	AM670	-	hypothetical protein
463	 49.47	0	609843..610784	+	313	56416833	-	AM671	-	hypothetical protein
464	 48.78	0	611370..612968	+	532	56416834	-	AM673	-	hypothetical protein
465	 49.77	0	613573..616785	+	1070	56416835	-	AM675	-	hypothetical protein
466	 49.28	0	617089..618480	-	463	56416836	-	AM676	-	hypothetical protein
467	 49.31	0	618649..620388	-	579	56416837	argS	AM678	-	arginyl-tRNA synthetase
468	 49.79	0	620653..621369	+	238	56416838	recO	AM680	-	DNA repair protein RecO
469	 52.45	0	621444..622055	+	203	56416839	-	AM681	-	hypothetical protein
470	 55.07	+1	622067..622273	+	68	56416840	-	AM682	-	hypothetical protein
471	 52.59	+1	622240..623646	-	468	56416841	-	AM683	-	hypothetical protein
472	 48.40	0	623938..627243	-	1101	56416842	ileS	AM684	-	isoleucyl-tRNA synthetase
473	 46.58	-1	627607..628089	+	160	56416843	-	AM685	-	hypothetical protein
474	 52.75	+1	628055..628837	+	260	56416844	-	AM686	-	hypothetical protein
475	 53.70	+1	628841..629110	-	89	56416845	-	AM688	-	hypothetical protein
476	 50.77	0	629256..632300	+	1014	56416846	-	AM689	-	hypothetical protein
477	 51.43	0	632725..633741	-	338	56416847	prfB	AM692	-	peptide chain release factor 2
478	 49.14	0	634031..634783	-	250	56416848	-	AM694	-	hypothetical protein
479	 51.50	0	635162..636631	-	489	56416849	gatA	AM698	-	glutamyl-tRNA amidotransferase chain A
480	 49.81	0	636928..638220	+	430	56416850	folC	AM699	-	folylpolyglutamate synthase
481	 51.10	0	638378..639289	+	303	56416851	hemC	AM700	-	porphobilinogen deaminase
482	 51.44	0	639264..640163	+	299	56416852	murB	AM701	-	UDP-N-acetylenolpyruvoylglucosamine reductase
483	 53.12	+1	640456..644619	+	1387	56416853	ankA	AM705	-	ankyrin
484	 50.52	0	645424..645906	-	160	56416854	nuoI	AM707	-	NADH dehydrogenase subunit I
485	 46.53	-1	645922..646641	-	239	56416855	lepB	AM708	-	signal peptidase
486	 48.53	0	646652..647092	-	146	56416856	-	AM709	-	hypothetical protein
487	 52.16	0	647660..658138	+	3492	56416857	-	AM712	-	hypothetical protein
488	 43.40	-2	658530..658817	-	95	56416858	-	AM715	-	hypothetical protein
489	 44.35	-1	659399..659770	-	123	56416859	orfX	AM717	-	ORF X
490	 47.44	0	662843..663076	+	77	56416860	orfY	AM721	-	ORF Y
491	 45.36	-1	663149..663547	+	132	56416861	orfX	AM723	-	ORF X
492	 52.15	0	664842..666701	-	619	56416862	typA	AM730	-	GTP-binding protein
493	 46.59	-1	666756..669101	-	781	56416863	clpA	AM731	-	ATP-dependent Clp protease ATP-binding subunit
494	 43.56	-2	669205..669918	+	237	56416864	terC	AM733	-	membrane protein
495	 46.05	-1	670127..670480	-	117	56416865	rbfA	AM734	-	ribosome-binding factor A
496	 51.50	0	670477..672975	-	832	56416866	infB	AM735	-	translation initiation factor IF-2
497	 50.13	0	672991..674538	-	515	56416867	nusA	AM736	-	transcription elongation factor NusA
498	 48.01	0	675050..678163	-	1037	56416868	acrD	AM738	-	acriflavin resistance protein D
499	 46.62	-1	678393..679175	-	260	56416869	tatC	AM740	-	Sec-independent protein translocase protein
500	 50.12	0	679273..680541	-	422	56416870	ispG	AM741	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
501	 55.34	+2	680569..681945	-	458	56416871	-	AM742	-	hypothetical protein
502	 50.38	0	682043..683233	-	396	56416872	dxr	AM743	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
503	 50.76	0	683247..684692	-	481	56416873	nuoN1	AM744	-	NADH dehydrogenase chain N
504	 49.11	0	684695..686158	-	487	56416874	nuoM	AM745	-	NADH dehydrogenase chain M
505	 48.00	0	686155..688056	-	633	56416875	nuoL	AM746	-	NADH dehydrogenase chain L
506	 49.54	0	688124..688450	-	108	56416876	nuoK	AM747	-	NADH dehydrogenase chain K
507	 51.08	0	688499..689101	-	200	56416877	nuoJ	AM748	-	NADH dehydrogenase chain J
508	 51.74	0	689290..690582	-	430	56416878	nuoF	AM750	-	NADH dehydrogenase I subunit F
509	 50.00	0	690661..691824	-	387	56416879	fadB	AM752	-	3-hydroxyacyl-COA dehydrogenase
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.