IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
382	 45.76	-1	517430..518242	-	270	56416752	ksgA	AM558	-	dimethyladenosine transferase
383	 46.47	-1	518375..519181	+	268	56416753	tpiA	AM559	-	triosephosphate isomerase
384	 46.27	-1	519165..520184	+	339	56416754	-	AM560	-	hypothetical protein
385	 50.29	0	520194..521219	+	341	56416755	-	AM561	-	hypothetical protein
386	 47.77	0	521178..521828	-	216	56416756	-	AM562	-	hypothetical protein
387	 49.72	0	521880..522233	+	117	56416757	folB	AM563	-	dihydroneopterin aldolase
388	 52.94	+1	522285..523238	+	317	56416758	mdh	AM564	-	malate dehydrogenase
389	 46.46	-1	523554..524231	-	225	56416759	ubiG	AM566	-	3-demethylubiquinone-9 3-methyltransferase
390	 50.35	0	524186..524755	+	189	56416760	infB	AM568	-	translation initiation factor IF-2
391	 49.38	0	524724..524966	-	80	56416761	-	AM569	-	hypothetical protein
392	 53.51	+1	525159..525599	+	146	56416762	rpiB	AM570	-	ribose 5-phosphate isomerase
393	 45.53	-1	525692..526396	+	234	56416763	ubiG	AM571	-	3-demethylubiquinone-9 3-methyltransferase
394	 47.73	0	526497..527003	-	168	56416764	gcp	AM572	-	O-sialoglycoprotein endopeptidase
395	 50.72	0	527013..527219	-	68	56416765	-	AM573	-	hypothetical protein
396	 46.76	-1	527461..528138	-	225	56416766	-	AM574	-	hypothetical protein
397	 43.08	-2	528119..528949	-	276	56416767	-	AM576	-	hypothetical protein
398	 45.97	-1	528928..529647	-	239	56416768	-	AM578	-	hypothetical protein
399	 45.34	-1	529698..530105	-	135	56416769	-	AM579	-	hypothetical protein
400	 42.89	-2	530080..530466	-	128	56416770	-	AM580	-	hypothetical protein
401	 45.59	-1	530463..531017	-	184	56416771	-	AM581	-	hypothetical protein
402	 38.60	-2	531026..531367	-	113	56416772	-	AM582	-	hypothetical protein
403	 48.79	0	531869..535012	-	1047	56416773	putA	AM583	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
404	 47.96	0	535097..536005	+	302	56416774	fabG	AM584	-	3-oxoacyl-reductase
405	 45.65	-1	536059..536391	-	110	56416775	-	AM586	-	hypothetical protein
406	 47.73	0	537408..538310	+	300	56416776	-	AM589	-	hypothetical protein
407	 42.53	-2	538467..539162	-	231	56416777	rlpA	AM590	-	rare lipoprotein A precursor
408	 46.33	-1	539361..540191	-	276	56416778	xthA2	AM591	-	exodeoxyribonuclease III
409	 48.71	0	540314..541048	-	244	56416779	-	AM592	-	hypothetical protein
410	 40.83	-2	541381..541500	+	39	56416780	rpmJ	AM593	-	large subunit ribosomal protein L36
411	 51.39	0	541529..541888	+	119	56416781	-	AM594	-	hypothetical protein
412	 53.00	+1	541901..542551	-	216	56416782	-	AM595	-	hypothetical protein
413	 47.62	0	542576..542848	-	90	56416783	rpmA	AM596	-	50S ribosomal protein L27
414	 48.84	0	542852..543154	-	100	161544989	rplU	AM597	-	50S ribosomal protein L21
415	 47.69	0	543637..544932	+	431	56416785	eno	AM600	-	enolase 1 (2-phosphoglycerate dehydratase 1)
416	 47.28	0	544934..545980	+	348	56416786	obgE	AM601	-	GTPase ObgE
417	 45.64	-1	545943..546332	+	129	56416787	-	AM603	-	hypothetical protein
418	 44.75	-1	546503..547378	-	291	56416788	mraW	AM605	-	S-adenosyl-methyltransferase MraW
419	 46.74	-1	547550..548086	-	178	56416789	ygfA	AM606	-	5-formyltetrahydrofolate cyclo-ligase
420	 50.48	0	548370..553613	+	1747	56416790	-	AM612	-	hypothetical protein
421	 43.33	-2	553836..555356	+	506	56416791	-	AM613	-	hypothetical protein
422	 49.47	0	555884..556453	-	189	56416792	-	AM615	-	hypothetical protein
423	 47.41	0	556586..558397	-	603	56416793	-	AM616	-	hypothetical protein
424	 47.41	0	558602..559624	-	340	56416794	trxB2	AM617	-	thioredoxin reductase
425	 45.99	-1	559705..561039	-	444	56416795	pmbA	AM618	-	pmbA protein
426	 46.57	-1	561049..561645	-	198	56416796	folE	AM619	-	GTP cyclohydrolase
427	 48.96	0	561652..562515	-	287	56416797	atpG	AM620	-	ATP synthase gamma chain
428	 50.54	0	562810..564006	+	398	56416798	nuoD	AM623	-	NADH dehydrogenase subunit D
429	 49.02	0	564011..564520	+	169	56416799	nuoE	AM624	-	NADH dehydrogenase subunit E
430	 49.21	0	564510..565208	+	232	56416800	dnaQ	AM625	-	DNA polymerase III epsilon chain
431	 49.27	0	565245..566825	-	526	56416801	-	AM626	-	hypothetical protein
432	 49.45	0	567191..567829	+	212	56416802	-	AM628	-	hypothetical protein
433	 49.00	0	568265..570115	+	616	56416803	-	AM629	-	hypothetical protein
434	 47.00	0	570249..570782	-	177	56416804	-	AM630	-	hypothetical protein
435	 49.14	0	570776..571648	-	290	56416805	rpoH	AM631	-	RNA polymerase sigma-32 factor
436	 43.17	-2	571770..572084	+	104	56416806	-	AM632	-	hypothetical protein
437	 47.97	0	572081..572326	+	81	56416807	-	AM634	-	hypothetical protein
438	 50.03	0	572766..582350	+	3194	56416808	-	AM638	-	hypothetical protein
439	 47.88	0	582496..583554	-	352	56416809	nuoH	AM640	-	NADH dehydrogenase subunit H
440	 50.67	0	583556..585631	-	691	56416810	nuoG	AM641	-	NADH dehydrogenase subunit G
441	 50.46	0	585639..585854	-	71	56416811	-	AM642	-	hypothetical protein
442	 49.03	0	586035..588416	-	793	56416812	gyrB2	AM644	-	DNA gyrase subunit B
443	 50.66	0	588750..589355	+	201	56416813	ubiX	AM645	-	3-octaprenyl-4-hydroxybenzoate carboxyl-lyase
444	 53.76	+1	589454..589879	-	141	56416814	-	AM647	-	hypothetical protein
445	 47.96	0	590379..591602	-	407	56416815	-	AM649	-	hypothetical protein
446	 46.33	-1	591574..591927	-	117	56416816	adx1	AM650	-	ferredoxin [2Fe-2S] adrenodoxin-like precursor adx1
447	 52.02	0	591953..593761	-	602	56416817	hscA	AM651	-	heat shock protein
448	 44.08	-1	593749..594297	-	182	56416818	hscB	AM652	-	chaperone protein
449	 49.00	0	594578..594979	-	133	56416819	nifU	AM654	-	scaffold protein
450	 50.53	0	594988..596214	-	408	56416820	iscS	AM655	-	cysteine desulfurase
451	 50.03	0	596247..597809	-	520	56416821	-	AM656	-	hypothetical protein
452	 50.35	0	598007..598711	+	234	56416822	-	AM657	-	hypothetical protein
453	 48.69	0	599013..600614	+	533	56416823	lysK	AM658	-	lysyl-tRNA synthetase
454	 50.58	0	600760..601101	+	113	56416824	-	AM660	-	hypothetical protein
455	 49.73	0	601147..601890	-	247	56416825	truA	AM661	-	tRNA pseudouridine synthase A
456	 48.49	0	601887..602783	-	298	56416826	pyrB	AM662	-	aspartate carbamoyltransferase catalytic subunit
457	 48.64	0	602946..603605	-	219	56416827	-	AM664	-	putative translaldolase
458	 49.10	0	603602..603988	-	128	56416828	atpC	AM665	-	ATP synthase epsilon chain
459	 52.02	0	604058..605518	-	486	56416829	atpD	AM666	-	F0F1 ATP synthase subunit beta
460	 46.01	-1	605894..607345	+	483	56416830	mgtE	AM668	-	magnesium transporter
461	 49.67	0	607824..608429	+	201	56416831	ftsJ	AM669	-	cell division protein
462	 52.76	+1	608913..609782	+	289	56416832	-	AM670	-	hypothetical protein
463	 49.47	0	609843..610784	+	313	56416833	-	AM671	-	hypothetical protein
464	 48.78	0	611370..612968	+	532	56416834	-	AM673	-	hypothetical protein
465	 49.77	0	613573..616785	+	1070	56416835	-	AM675	-	hypothetical protein
466	 49.28	0	617089..618480	-	463	56416836	-	AM676	-	hypothetical protein
467	 49.31	0	618649..620388	-	579	56416837	argS	AM678	-	arginyl-tRNA synthetase
468	 49.79	0	620653..621369	+	238	56416838	recO	AM680	-	DNA repair protein RecO
469	 52.45	0	621444..622055	+	203	56416839	-	AM681	-	hypothetical protein
470	 55.07	+1	622067..622273	+	68	56416840	-	AM682	-	hypothetical protein
471	 52.59	+1	622240..623646	-	468	56416841	-	AM683	-	hypothetical protein
472	 48.40	0	623938..627243	-	1101	56416842	ileS	AM684	-	isoleucyl-tRNA synthetase
473	 46.58	-1	627607..628089	+	160	56416843	-	AM685	-	hypothetical protein
474	 52.75	+1	628055..628837	+	260	56416844	-	AM686	-	hypothetical protein
475	 53.70	+1	628841..629110	-	89	56416845	-	AM688	-	hypothetical protein
476	 50.77	0	629256..632300	+	1014	56416846	-	AM689	-	hypothetical protein
477	 51.43	0	632725..633741	-	338	56416847	prfB	AM692	-	peptide chain release factor 2
478	 49.14	0	634031..634783	-	250	56416848	-	AM694	-	hypothetical protein
479	 51.50	0	635162..636631	-	489	56416849	gatA	AM698	-	glutamyl-tRNA amidotransferase chain A
480	 49.81	0	636928..638220	+	430	56416850	folC	AM699	-	folylpolyglutamate synthase
481	 51.10	0	638378..639289	+	303	56416851	hemC	AM700	-	porphobilinogen deaminase
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.