IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
317	 49.12	0	417952..421353	-	1133	56416687	-	AM465	-	hypothetical protein
318	 52.30	0	421771..425556	-	1261	56416688	-	AM470	-	hypothetical protein
319	 49.33	0	425738..426856	+	372	56416689	murG	AM471	-	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine)
320	 47.09	0	427002..427568	+	188	56416690	efp	AM472	-	elongation factor PEF-P
321	 49.34	0	427571..428332	+	253	56416691	suhB	AM473	-	extragenic suppressor protein
322	 49.27	0	428329..429219	+	296	56416692	rluC	AM474	-	ribosomal large subunit pseudouridine synthase
323	 46.13	-1	429469..430836	-	455	56416693	pleD	AM475	-	response regulator PleD
324	 50.39	0	431033..431419	-	128	56416694	-	AM476	-	hypothetical protein
325	 47.53	0	431385..436238	-	1617	56416695	-	AM477	-	hypothetical protein
326	 51.93	0	436634..437359	+	241	56416696	-	AM480	-	hypothetical protein
327	 49.46	0	437361..438761	+	466	56416697	cysS	AM481	-	cysteinyl-tRNA synthetase
328	 48.31	0	439009..439983	+	324	56416698	nrdF	AM483	-	ribonucleotide-diphosphate reductase subunit beta
329	 49.00	0	439961..440560	+	199	56416699	-	AM485	-	hypothetical protein
330	 48.42	0	441151..441435	-	94	56416700	-	AM486	-	hypothetical protein
331	 47.58	0	441651..442682	+	343	56416701	-	AM487	-	hypothetical protein
332	 50.79	0	442810..444648	+	612	56416702	dnaG	AM488	-	DNA primase
333	 51.80	0	444617..444838	+	73	56416703	-	AM489	-	hypothetical protein
334	 48.18	0	444813..446711	-	632	56416704	rpoD	AM490	-	RNA polymerase sigma factor
335	 47.87	0	446914..447876	-	320	56416705	-	AM492	-	hypothetical protein
336	 48.62	0	448016..448885	+	289	56416706	ispE	AM493	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
337	 51.72	0	449010..449444	-	144	56416707	-	AM495	-	hypothetical protein
338	 49.02	0	449860..450216	-	118	56416708	cutA	AM497	-	periplasmic divalent cation tolerance protein
339	 44.00	-1	450260..452743	-	827	56416709	dhkA	AM498	-	sensory box histidine kinase/response regulator
340	 50.23	0	453242..453904	-	220	56416710	-	AM499	-	hypothetical protein
341	 50.47	0	454148..454468	+	106	56416711	-	AM500	-	hypothetical protein
342	 51.06	0	454671..456080	+	469	56416712	-	AM501	-	hypothetical protein
343	 46.78	-1	456208..458646	+	812	56416713	topA	AM502	-	DNA topoisomerase
344	 45.70	-1	458866..459342	-	158	56416714	-	AM504	-	hypothetical protein
345	 47.93	0	460409..460771	-	120	56416715	acpS	AM506	-	holo-(acyl-carrier-protein) synthase
346	 49.45	0	460768..462045	-	425	56416716	proS	AM507	-	prolyl-tRNA synthetase
347	 51.09	0	462309..463361	-	350	56416717	-	AM508	-	hypothetical protein
348	 43.66	-2	463648..464160	+	170	56416718	coaD	AM509	-	phosphopantetheine adenylyltransferase
349	 51.43	0	464331..465308	-	325	56416719	trxB	AM510	-	thioredoxin reductase
350	 47.60	0	465305..465928	-	207	56416720	tdpX1	AM511	-	thioredoxin peroxidase 1
351	 51.10	0	466204..466884	+	226	56416721	aatA	AM514	-	aspartate aminotransferase A
352	 47.67	0	466941..467561	+	206	56416722	aatA	AM515	-	aspartate aminotransferase A
353	 49.53	0	467807..469819	-	670	56416723	-	AM516	-	hypothetical protein
354	 50.17	0	469871..470464	-	197	56416724	-	AM517	-	hypothetical protein
355	 45.92	-1	470483..471793	-	436	56416725	-	AM518	-	hypothetical protein
356	 48.97	0	471817..473121	-	434	56416726	-	AM520	-	hypothetical protein
357	 48.79	0	473383..474249	+	288	56416727	mreC	AM521	-	rod shape determining protein
358	 53.51	+1	474358..475467	-	369	56416728	mreB	AM522	-	rod shape-determining protein
359	 50.16	0	475701..476621	+	306	56416729	truB	AM524	-	tRNA pseudouridine 55 synthase
360	 43.26	-2	476660..476941	+	93	56416730	rpsO	AM525	-	30S ribosomal protein S15
361	 51.03	0	476993..479410	+	805	56416731	pnp	AM526	-	polynucleotide phosphorylase/polyadenylase
362	 50.97	0	479416..480192	+	258	56416732	-	AM527	-	hypothetical protein
363	 49.17	0	480327..482126	+	599	56416733	lepA	AM528	-	GTP-binding protein LepA
364	 48.24	0	483114..483482	-	122	56416734	-	AM529	-	hypothetical protein
365	 55.13	+1	483889..485769	+	626	56416735	msp1a	AM530	-	major surface protein 1a
366	 51.96	0	486324..487166	+	280	56416736	mlp2	AM532	-	major surface protein 1a-like protein 22
367	 51.48	0	487640..488515	+	291	56416737	mlp3	AM535	-	major surface protein 1a-like protein 3
368	 55.24	+1	488938..489873	+	311	56416738	mlp4	AM536	-	major surface protein 1a-like protein 4
369	 52.87	+1	489895..490626	+	243	56416739	-	AM537	-	hypothetical protein
370	 50.53	0	491451..498992	+	2513	56416740	-	AM540	-	hypothetical protein
371	 48.14	0	499054..500883	+	609	56416741	-	AM541	-	hypothetical protein
372	 47.18	0	501283..503181	+	632	56416742	-	AM543	-	hypothetical protein
373	 48.99	0	503759..505636	+	625	56416743	-	AM545	-	hypothetical protein
374	 42.74	-2	505658..505891	+	77	56416744	-	AM546	-	hypothetical protein
375	 46.92	0	506074..507987	+	637	56416745	-	AM547	-	hypothetical protein
376	 47.24	0	508787..510619	+	610	56416746	-	AM550	-	hypothetical protein
377	 48.36	0	510801..512963	+	720	56416747	-	AM551	-	hypothetical protein
378	 47.27	0	512951..513904	-	317	56416748	thiL	AM552	-	thiamin-monophosphate kinase
379	 45.16	-1	514140..515027	+	295	56416749	-	AM555	-	hypothetical protein
380	 50.23	0	515209..516492	+	427	56416750	bioA	AM556	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
381	 45.54	-1	516933..517268	+	111	56416751	-	AM557	-	hypothetical protein
382	 45.76	-1	517430..518242	-	270	56416752	ksgA	AM558	-	dimethyladenosine transferase
383	 46.47	-1	518375..519181	+	268	56416753	tpiA	AM559	-	triosephosphate isomerase
384	 46.27	-1	519165..520184	+	339	56416754	-	AM560	-	hypothetical protein
385	 50.29	0	520194..521219	+	341	56416755	-	AM561	-	hypothetical protein
386	 47.77	0	521178..521828	-	216	56416756	-	AM562	-	hypothetical protein
387	 49.72	0	521880..522233	+	117	56416757	folB	AM563	-	dihydroneopterin aldolase
388	 52.94	+1	522285..523238	+	317	56416758	mdh	AM564	-	malate dehydrogenase
389	 46.46	-1	523554..524231	-	225	56416759	ubiG	AM566	-	3-demethylubiquinone-9 3-methyltransferase
390	 50.35	0	524186..524755	+	189	56416760	infB	AM568	-	translation initiation factor IF-2
391	 49.38	0	524724..524966	-	80	56416761	-	AM569	-	hypothetical protein
392	 53.51	+1	525159..525599	+	146	56416762	rpiB	AM570	-	ribose 5-phosphate isomerase
393	 45.53	-1	525692..526396	+	234	56416763	ubiG	AM571	-	3-demethylubiquinone-9 3-methyltransferase
394	 47.73	0	526497..527003	-	168	56416764	gcp	AM572	-	O-sialoglycoprotein endopeptidase
395	 50.72	0	527013..527219	-	68	56416765	-	AM573	-	hypothetical protein
396	 46.76	-1	527461..528138	-	225	56416766	-	AM574	-	hypothetical protein
397	 43.08	-2	528119..528949	-	276	56416767	-	AM576	-	hypothetical protein
398	 45.97	-1	528928..529647	-	239	56416768	-	AM578	-	hypothetical protein
399	 45.34	-1	529698..530105	-	135	56416769	-	AM579	-	hypothetical protein
400	 42.89	-2	530080..530466	-	128	56416770	-	AM580	-	hypothetical protein
401	 45.59	-1	530463..531017	-	184	56416771	-	AM581	-	hypothetical protein
402	 38.60	-2	531026..531367	-	113	56416772	-	AM582	-	hypothetical protein
403	 48.79	0	531869..535012	-	1047	56416773	putA	AM583	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
404	 47.96	0	535097..536005	+	302	56416774	fabG	AM584	-	3-oxoacyl-reductase
405	 45.65	-1	536059..536391	-	110	56416775	-	AM586	-	hypothetical protein
406	 47.73	0	537408..538310	+	300	56416776	-	AM589	-	hypothetical protein
407	 42.53	-2	538467..539162	-	231	56416777	rlpA	AM590	-	rare lipoprotein A precursor
408	 46.33	-1	539361..540191	-	276	56416778	xthA2	AM591	-	exodeoxyribonuclease III
409	 48.71	0	540314..541048	-	244	56416779	-	AM592	-	hypothetical protein
410	 40.83	-2	541381..541500	+	39	56416780	rpmJ	AM593	-	large subunit ribosomal protein L36
411	 51.39	0	541529..541888	+	119	56416781	-	AM594	-	hypothetical protein
412	 53.00	+1	541901..542551	-	216	56416782	-	AM595	-	hypothetical protein
413	 47.62	0	542576..542848	-	90	56416783	rpmA	AM596	-	50S ribosomal protein L27
414	 48.84	0	542852..543154	-	100	161544989	rplU	AM597	-	50S ribosomal protein L21
415	 47.69	0	543637..544932	+	431	56416785	eno	AM600	-	enolase 1 (2-phosphoglycerate dehydratase 1)
416	 47.28	0	544934..545980	+	348	56416786	obgE	AM601	-	GTPase ObgE
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.