IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 54.52	+1	292131..292970	+	279	56416607	-	AM346	-	hypothetical protein
238	 52.29	0	293135..296737	-	1200	56416608	-	AM347	-	hypothetical protein
239	 48.48	0	296823..297086	+	87	56416609	-	AM348	-	hypothetical protein
240	 50.10	0	297076..297588	+	170	56416610	coq7	AM349	-	ubiquinone biosynthesis protein
241	 45.47	-1	297645..298130	+	161	56416611	-	AM351	-	hypothetical protein
242	 49.30	0	298247..300946	-	899	56416612	-	AM354	-	hypothetical protein
243	 51.88	0	301069..305679	-	1536	56416613	-	AM356	-	hypothetical protein
244	 54.98	+1	305687..305917	-	76	56416614	-	AM357	-	hypothetical protein
245	 51.08	0	306198..310316	-	1372	56416615	-	AM359	-	hypothetical protein
246	 54.74	+1	310609..310893	-	94	56416616	-	AM360	-	hypothetical protein
247	 50.25	0	311228..319747	-	2839	56416617	-	AM366	-	hypothetical protein
248	 49.64	0	320035..323076	-	1013	56416618	-	AM368	-	hypothetical protein
249	 48.71	0	323519..325534	-	671	56416619	uvrD	AM369	-	DNA helicase II
250	 52.62	+1	325806..327449	+	547	56416620	-	AM371	-	hypothetical protein
251	 50.13	0	328606..331332	+	908	56416621	gyrA	AM372	-	DNA gyrase subunit A
252	 48.82	0	331332..331964	+	210	56416622	nth	AM373	-	endonuclease III
253	 49.83	0	332283..332888	+	201	56416623	-	AM375	-	hypothetical protein
254	 49.19	0	332974..334890	+	638	56416624	htpG	AM376	-	heat shock protein 90
255	 58.27	+2	335136..335516	+	126	56416625	-	AM378	-	hypothetical protein
256	 58.27	+2	335631..336011	+	126	56416626	-	AM380	-	hypothetical protein
257	 52.74	+1	336686..337396	-	236	56416627	-	AM382	-	hypothetical protein
258	 48.82	0	338112..339428	-	438	56416628	purB	AM384	-	adenylosuccinate lyase
259	 48.26	0	340263..342104	+	613	56416629	uvrC	AM385	-	excinuclease ABC subunit C
260	 51.42	0	342230..346690	-	1486	56416630	-	AM387	-	hypothetical protein
261	 49.52	0	347150..347878	-	242	56416631	birA	AM389	-	biotin-(acetyl-CoA carboxylase)
262	 49.18	0	347887..348555	-	222	56416632	gst	AM390	-	glutathione S-transferase
263	 47.88	0	348638..349180	-	180	56416633	-	AM391	-	hypothetical protein
264	 48.84	0	349511..350587	+	358	56416634	-	AM392	-	hypothetical protein
265	 51.71	0	350796..351437	+	213	56416635	recR	AM394	-	recombination protein
266	 53.85	+1	351434..351706	-	90	56416636	-	AM395	-	hypothetical protein
267	 50.17	0	351826..352710	-	294	56416637	znuA	AM396	-	high-affinity zinc uptake system protein
268	 47.56	0	352690..353427	+	245	56416638	znuC	AM397	-	zinc uptake system ATP-binding protein
269	 49.52	0	353420..354871	+	483	56416639	ubiB	AM399	-	ubiquinone biosynthesis protein
270	 48.76	0	354909..356114	+	401	56416640	-	AM400	-	hypothetical protein
271	 51.10	0	356277..357644	-	455	56416641	-	AM401	-	hypothetical protein
272	 49.45	0	357781..360423	-	880	56416642	-	AM402	-	hypothetical protein
273	 46.93	0	360719..361549	-	276	56416643	-	AM404	-	hypothetical protein
274	 51.09	0	361688..364480	+	930	56416644	kgd	AM405	-	alpha-ketoglutarate decarboxylase
275	 48.87	0	365054..366205	-	383	56416645	-	AM406	-	hypothetical protein
276	 51.10	0	366422..367327	-	301	56416646	dapA	AM407	-	dihydrodipicolinate synthase
277	 51.88	0	367524..367895	-	123	56416647	pkcI	AM409	-	protein kinase C inhibitor 1
278	 50.60	0	367892..369142	-	416	56416648	-	AM410	-	hypothetical protein
279	 48.82	0	369479..371938	+	819	56416649	mutS	AM412	-	DNA mismatch repair protein
280	 53.33	+1	371919..372203	+	94	56416650	-	AM413	-	hypothetical protein
281	 50.40	0	372351..373721	+	456	56416651	-	AM414	-	hypothetical protein
282	 48.68	0	373831..375153	+	440	56416652	-	AM415	-	hypothetical protein
283	 49.70	0	375143..376663	-	506	56416653	nadE	AM416	-	NH3-dependent NAD+ synthetase protein
284	 49.95	0	376670..377710	-	346	56416654	hemB	AM417	-	delta-aminolevulinic acid dehydratase
285	 48.68	0	377907..379496	+	529	56416655	pbpA2	AM418	-	penicillin-binding protein
286	 50.30	0	379536..382376	+	946	56416656	-	AM419	-	hypothetical protein
287	 50.14	0	382538..384001	+	487	56416657	-	AM420	-	hypothetical protein
288	 53.52	+1	384373..384912	-	179	56416658	ssb	AM424	-	single-strand binding protein
289	 47.29	0	385083..386465	+	460	56416659	mcd	AM425	-	malonyl-CoA decarboxylase
290	 49.79	0	386478..387935	+	485	56416660	gatB	AM426	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
291	 49.12	0	388435..389283	+	282	56416661	fabI	AM428	-	enoyl-[acyl-carrier-protein] reductase
292	 50.21	0	389525..390940	+	471	56416662	dnaA	AM430	-	chromosomal replication initiation protein
293	 50.30	0	391044..392039	-	331	56416663	-	AM431	-	hypothetical protein
294	 48.23	0	392119..392823	+	234	56416664	-	AM432	-	hypothetical protein
295	 48.56	0	393003..393764	+	253	56416665	pdxJ	AM434	-	pyridoxal phosphate biosynthetic protein PdxJ
296	 46.80	-1	394935..395825	-	296	56416666	-	AM435	-	hypothetical protein
297	 50.84	0	395807..396400	-	197	56416667	-	AM436	-	hypothetical protein
298	 49.37	0	397133..397849	+	238	56416668	coaE	AM438	-	dephospho-CoA kinase
299	 48.92	0	397898..399700	-	600	56416669	thiC	AM440	-	thiamine biosynthesis protein ThiC
300	 50.60	0	399744..400409	-	221	56416670	-	AM441	-	hypothetical protein
301	 54.01	+1	400474..400860	-	128	56416671	rpoZ	AM442	-	DNA-directed RNA polymerase omega subunit
302	 45.37	-1	401195..401518	-	107	56416672	-	AM445	-	hypothetical protein
303	 49.36	0	401901..404390	+	829	56416673	leuS	AM446	-	leucyl-tRNA synthetase
304	 50.82	0	404701..405489	+	262	56416674	-	AM447	-	hypothetical protein
305	 49.31	0	405446..406165	+	239	56416675	pyrF	AM448	-	orotidine 5'-phosphate decarboxylase
306	 50.59	0	406258..406680	-	140	56416676	ccmE	AM449	-	cytochrome c-type biogenesis protein CcmE
307	 51.15	0	406802..407587	-	261	56416677	surE	AM451	-	stationary-phase survival protein
308	 48.40	0	408316..408879	-	187	56416678	nuoC1	AM452	-	NADH-ubiquinone oxidoreductase subunit
309	 55.30	+1	408885..409412	-	175	56416679	nuoB	AM453	-	NADH dehydrogenase subunit B
310	 50.98	0	409417..409824	-	135	56416680	nuoA	AM454	-	NADH dehydrogenase I chain A
311	 48.35	0	410141..413011	-	956	56416681	uvrA	AM456	-	excinuclease ABC subunit A
312	 47.19	0	413045..413578	-	177	56416682	nusB	AM457	-	N utilization substance protein B
313	 48.67	0	413571..414020	-	149	161544991	ribH	AM458	-	riboflavin synthase subunit beta
314	 48.34	0	414052..415770	-	572	161544990	yidC	AM460	-	putative inner membrane protein translocase component YidC
315	 49.35	0	416086..416928	-	280	56416685	pssA	AM462	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
316	 50.07	0	416989..417693	-	234	56416686	psd	AM463	-	phosphatidylserine decarboxylase
317	 49.12	0	417952..421353	-	1133	56416687	-	AM465	-	hypothetical protein
318	 52.30	0	421771..425556	-	1261	56416688	-	AM470	-	hypothetical protein
319	 49.33	0	425738..426856	+	372	56416689	murG	AM471	-	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine)
320	 47.09	0	427002..427568	+	188	56416690	efp	AM472	-	elongation factor PEF-P
321	 49.34	0	427571..428332	+	253	56416691	suhB	AM473	-	extragenic suppressor protein
322	 49.27	0	428329..429219	+	296	56416692	rluC	AM474	-	ribosomal large subunit pseudouridine synthase
323	 46.13	-1	429469..430836	-	455	56416693	pleD	AM475	-	response regulator PleD
324	 50.39	0	431033..431419	-	128	56416694	-	AM476	-	hypothetical protein
325	 47.53	0	431385..436238	-	1617	56416695	-	AM477	-	hypothetical protein
326	 51.93	0	436634..437359	+	241	56416696	-	AM480	-	hypothetical protein
327	 49.46	0	437361..438761	+	466	56416697	cysS	AM481	-	cysteinyl-tRNA synthetase
328	 48.31	0	439009..439983	+	324	56416698	nrdF	AM483	-	ribonucleotide-diphosphate reductase subunit beta
329	 49.00	0	439961..440560	+	199	56416699	-	AM485	-	hypothetical protein
330	 48.42	0	441151..441435	-	94	56416700	-	AM486	-	hypothetical protein
331	 47.58	0	441651..442682	+	343	56416701	-	AM487	-	hypothetical protein
332	 50.79	0	442810..444648	+	612	56416702	dnaG	AM488	-	DNA primase
333	 51.80	0	444617..444838	+	73	56416703	-	AM489	-	hypothetical protein
334	 48.18	0	444813..446711	-	632	56416704	rpoD	AM490	-	RNA polymerase sigma factor
335	 47.87	0	446914..447876	-	320	56416705	-	AM492	-	hypothetical protein
336	 48.62	0	448016..448885	+	289	56416706	ispE	AM493	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.