IslandPathversion 1.0

IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 49.65 STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
173	 48.89	0	214002..214676	+	224	161544992	rplA	AM259	-	50S ribosomal protein L1
174	 51.42	0	214712..215203	+	163	56416544	rplJ	AM260	-	50S ribosomal protein L10
175	 48.89	0	215328..215732	+	134	56416545	rplL	AM261	-	50S ribosomal protein L7/L12
176	 48.78	0	215769..219917	+	1382	56416546	rpoB	AM262	-	DNA-directed RNA polymerase subunit beta
177	 50.31	0	219929..224176	+	1415	56416547	rpoC	AM263	-	DNA-directed RNA polymerase beta' chain
178	 50.20	0	224173..225192	-	339	56416548	rnhB	AM264	-	ribonuclease HII
179	 51.05	0	225409..228828	+	1139	56416549	-	AM265	-	hypothetical protein
180	 51.59	0	229023..229526	-	167	56416550	-	AM266	-	hypothetical protein
181	 51.18	0	229773..230915	-	380	56416551	-	AM268	-	hypothetical protein
182	 51.52	0	231322..231849	+	175	56416552	-	AM270	-	hypothetical protein
183	 49.10	0	231937..232710	-	257	56416553	-	AM271	-	pantothenate kinase
184	 49.23	0	232717..233886	-	389	56416554	pyrD	AM273	-	dihydroorotate dehydrogenase 2
185	 47.55	0	234047..234637	+	196	56416555	-	AM275	-	hypothetical protein
186	 45.68	-1	234769..235521	+	250	56416556	-	AM276	-	hypothetical protein
187	 49.94	0	235885..236751	+	288	56416557	-	AM279	-	hypothetical protein
188	 53.50	+1	236889..237488	+	199	56416558	pdxH	AM281	-	pyridoxamine 5-phosphate oxidase
189	 50.46	0	237493..238911	-	472	56416559	murE	AM282	-	UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
190	 50.00	0	238895..239110	+	71	56416560	-	AM283	-	hypothetical protein
191	 50.53	0	239132..240358	-	408	56416561	metC	AM284	-	cystathionine beta-lyase
192	 52.74	+1	240312..240785	-	157	56416562	bolA	AM285	-	bolA like protein
193	 50.85	0	240922..241857	+	311	56416563	-	AM286	-	hypothetical protein
194	 47.96	0	242268..245651	+	1127	56416564	dnaE	AM287	-	DNA polymerase III alpha subunit
195	 55.00	+1	245891..247279	+	462	56416565	rrs	AM289	-	3-phosphoshikimate 1-carboxyvinyltransferase
196	 51.04	0	249067..249450	+	127	56416566	sdhC	AM290	-	succinate dehydrogenase cytochrome b556 subunit
197	 50.93	0	249312..249686	-	124	56416567	-	AM291	-	hypothetical protein
198	 49.57	0	249441..249791	+	116	56416568	sdhD	AM292	-	succinate dehyrdrogenase subunit D
199	 53.68	+1	249942..251312	+	456	56416569	pep1	AM294	-	hypothetical protein
200	 51.60	0	251856..252638	-	260	56416570	thiD	AM295	-	phosphomethylpyrimidine kinase
201	 45.95	-1	252646..253311	-	221	56416571	-	AM296	-	hypothetical protein
202	 49.22	0	253312..254664	-	450	56416572	perM	AM297	-	permease perM-like
203	 46.33	-1	254937..255290	-	117	56416573	-	AM299	-	hypothetical protein
204	 49.16	0	255537..256073	+	178	56416574	rpsD	AM301	-	30S ribosomal protein S4
205	 47.26	0	256490..257638	-	382	56416575	-	AM302	-	hypothetical protein
206	 48.32	0	257698..258471	-	257	56416576	-	AM303	-	hypothetical protein
207	 54.67	+1	258486..259010	-	174	56416577	pgpA	AM305	-	phosphatidylglycerophosphatase A
208	 56.86	+2	259077..259331	-	84	56416578	-	AM306	-	hypothetical protein
209	 51.39	0	259718..261118	+	466	56416579	tig	AM308	-	trigger factor
210	 50.46	0	261123..261770	+	215	56416580	clpP	AM309	-	ATP-dependent Clp protease proteolytic subunit
211	 50.41	0	261780..262997	+	405	56416581	clpX	AM310	-	ATP-dependent protease ATP-binding subunit
212	 49.07	0	263016..265442	+	808	56416582	lon	AM311	-	ATP-dependent protease LA
213	 50.88	0	265965..266870	+	301	56416583	fmt	AM313	-	methionyl-tRNA formyltransferase
214	 51.32	0	267028..267861	+	277	56416584	-	AM315	-	hypothetical protein
215	 47.83	0	268029..268904	+	291	56416585	-	AM316	-	hypothetical protein
216	 51.22	0	269317..270339	+	340	56416586	thiE	AM318	-	thiamin monophosphate synthase
217	 47.64	0	270586..271899	-	437	56416587	-	AM320	-	hypothetical protein
218	 48.03	0	272040..272318	+	92	56416588	-	AM321	-	hypothetical protein
219	 51.63	0	272293..274566	+	757	56416589	ftsK	AM322	-	cell division protein
220	 49.29	0	274841..275893	-	350	56416590	-	AM324	-	hypothetical protein
221	 50.21	0	276120..277298	-	392	56416591	argD	AM326	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
222	 47.62	0	277480..278886	+	468	56416592	barA	AM327	-	histidine kinase sensor protein
223	 55.75	+2	278900..279751	-	283	56416593	-	AM328	-	hypothetical protein
224	 51.99	0	279717..280193	-	158	56416594	tolR	AM329	-	TolR protein
225	 49.06	0	280174..280866	-	230	56416595	tolQ	AM330	-	TolQ protein
226	 49.28	0	281043..282227	+	394	56416596	mutL	AM332	-	DNA mismatch repair protein
227	 48.20	0	282274..282939	+	221	56416597	mutL	AM333	-	DNA mismatch repair protein
228	 50.62	0	282953..284086	-	377	56416598	smf	AM334	-	DNA processing protein, chain A
229	 52.49	0	284565..285728	-	387	56416599	trmU	AM335	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
230	 46.53	-1	285916..286938	-	340	56416600	-	AM336	-	hypothetical protein
231	 55.22	+1	287239..288522	-	427	56416601	fabB	AM338	-	3-oxoacyl-(acyl-carrier-protein) synthase II
232	 46.55	-1	288627..288974	-	115	56416602	acpP	AM339	-	acyl carrier protein
233	 45.03	-1	289573..289743	-	56	56416603	rpmG	AM340	-	50S ribosomal protein L33
234	 50.00	0	289888..290631	+	247	56416604	-	AM342	-	hypothetical protein
235	 51.64	0	290619..291137	+	172	56416605	-	AM343	-	hypothetical protein
236	 49.68	0	291311..291622	+	103	56416606	-	AM345	-	hypothetical protein
237	 54.52	+1	292131..292970	+	279	56416607	-	AM346	-	hypothetical protein
238	 52.29	0	293135..296737	-	1200	56416608	-	AM347	-	hypothetical protein
239	 48.48	0	296823..297086	+	87	56416609	-	AM348	-	hypothetical protein
240	 50.10	0	297076..297588	+	170	56416610	coq7	AM349	-	ubiquinone biosynthesis protein
241	 45.47	-1	297645..298130	+	161	56416611	-	AM351	-	hypothetical protein
242	 49.30	0	298247..300946	-	899	56416612	-	AM354	-	hypothetical protein
243	 51.88	0	301069..305679	-	1536	56416613	-	AM356	-	hypothetical protein
244	 54.98	+1	305687..305917	-	76	56416614	-	AM357	-	hypothetical protein
245	 51.08	0	306198..310316	-	1372	56416615	-	AM359	-	hypothetical protein
246	 54.74	+1	310609..310893	-	94	56416616	-	AM360	-	hypothetical protein
247	 50.25	0	311228..319747	-	2839	56416617	-	AM366	-	hypothetical protein
248	 49.64	0	320035..323076	-	1013	56416618	-	AM368	-	hypothetical protein
249	 48.71	0	323519..325534	-	671	56416619	uvrD	AM369	-	DNA helicase II
250	 52.62	+1	325806..327449	+	547	56416620	-	AM371	-	hypothetical protein
251	 50.13	0	328606..331332	+	908	56416621	gyrA	AM372	-	DNA gyrase subunit A
252	 48.82	0	331332..331964	+	210	56416622	nth	AM373	-	endonuclease III
253	 49.83	0	332283..332888	+	201	56416623	-	AM375	-	hypothetical protein
254	 49.19	0	332974..334890	+	638	56416624	htpG	AM376	-	heat shock protein 90
255	 58.27	+2	335136..335516	+	126	56416625	-	AM378	-	hypothetical protein
256	 58.27	+2	335631..336011	+	126	56416626	-	AM380	-	hypothetical protein
257	 52.74	+1	336686..337396	-	236	56416627	-	AM382	-	hypothetical protein
258	 48.82	0	338112..339428	-	438	56416628	purB	AM384	-	adenylosuccinate lyase
259	 48.26	0	340263..342104	+	613	56416629	uvrC	AM385	-	excinuclease ABC subunit C
260	 51.42	0	342230..346690	-	1486	56416630	-	AM387	-	hypothetical protein
261	 49.52	0	347150..347878	-	242	56416631	birA	AM389	-	biotin-(acetyl-CoA carboxylase)
262	 49.18	0	347887..348555	-	222	56416632	gst	AM390	-	glutathione S-transferase
263	 47.88	0	348638..349180	-	180	56416633	-	AM391	-	hypothetical protein
264	 48.84	0	349511..350587	+	358	56416634	-	AM392	-	hypothetical protein
265	 51.71	0	350796..351437	+	213	56416635	recR	AM394	-	recombination protein
266	 53.85	+1	351434..351706	-	90	56416636	-	AM395	-	hypothetical protein
267	 50.17	0	351826..352710	-	294	56416637	znuA	AM396	-	high-affinity zinc uptake system protein
268	 47.56	0	352690..353427	+	245	56416638	znuC	AM397	-	zinc uptake system ATP-binding protein
269	 49.52	0	353420..354871	+	483	56416639	ubiB	AM399	-	ubiquinone biosynthesis protein
270	 48.76	0	354909..356114	+	401	56416640	-	AM400	-	hypothetical protein
271	 51.10	0	356277..357644	-	455	56416641	-	AM401	-	hypothetical protein
272	 49.45	0	357781..360423	-	880	56416642	-	AM402	-	hypothetical protein
49.65	MEAN

2.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.