IslandPath Analysis: Anaplasma marginale str. St. Maries



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 49.65   STD DEV: 2.84
Anaplasma marginale str. St. Maries, complete genome - 1..1197687
949 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
102	 50.54	0	130162..132183	-	673	56416472	ligA	AM152	-	DNA ligase
103	 53.15	+1	132192..132524	-	110	56416473	grxC2	AM153	-	glutaredoxin-like protein GRLA
104	 50.63	0	132514..132750	-	78	56416474	-	AM154	-	hypothetical protein
105	 46.74	-1	132894..133445	-	183	56416475	-	AM156	-	hypothetical protein
106	 52.01	0	133393..134763	-	456	56416476	radA	AM157	-	DNA repair protein RadA
107	 51.76	0	135010..137652	+	880	56416477	-	AM159	-	hypothetical protein
108	 50.34	0	137659..138246	+	195	56416478	-	AM160	-	hypothetical protein
109	 47.40	0	138257..138640	+	127	56416479	rpsF	AM161	-	30S ribosomal protein S6
110	 48.68	0	138716..138943	+	75	56416480	rpsR	AM161.5	-	30S ribosomal protein S18
111	 53.24	+1	138963..139625	+	220	56416481	rplI	AM162	-	50S ribosomal protein L9
112	 53.13	+1	139651..140943	+	430	56416482	glyA	AM164	-	glycine/serine hydroxymethyltransferase
113	 49.12	0	141074..141415	+	113	56416483	-	AM166	-	hypothetical protein
114	 50.09	0	141396..143144	+	582	56416484	msbA2	AM167	-	ABC efflux transporter
115	 53.28	+1	143415..145214	+	599	56416485	sdhA	AM168	-	succinate dehydrogenase flavoprotein subunit
116	 47.53	0	145239..146027	+	262	56416486	sdhB	AM169	-	succinate dehydrogenase iron-sulfur subunit
117	 50.11	0	146028..146903	+	291	56416487	thyX	AM170	-	FAD-dependent thymidylate synthase
118	 48.39	0	147040..148221	+	393	56416488	bcr2	AM171	-	bicyclomycin resistance protein
119	 49.30	0	148363..149358	-	331	56416489	ruvB	AM172	-	Holliday junction DNA helicase B
120	 53.05	+1	149355..149927	-	190	56416490	ruvA	AM173	-	holliday junction DNA helicase
121	 54.58	+1	149924..150676	-	250	56416491	ccmc	AM175	-	heme exporter protein C
122	 50.20	0	150861..151595	+	244	56416492	gmk	AM177	-	guanylate kinase
123	 54.45	+1	151721..152833	+	370	56416493	-	AM178	-	hypothetical protein
124	 51.22	0	152987..153886	+	299	56416494	folD	AM179	-	methylenetetrahydrofolate dehydrogenase
125	 50.09	0	154357..156576	+	739	56416495	msp1B-1	AM180	-	major surface protein 1B-1
126	 53.86	+1	157060..159456	+	798	56416496	-	AM185	-	hypothetical protein
127	 50.67	0	159495..159944	-	149	56416497	msp1Bpg1	AM188	-	major surface protein 1B
128	 50.71	0	160185..160817	-	210	56416498	-	AM189	-	hypothetical protein
129	 52.96	+1	161059..161598	-	179	56416499	cycM	AM190	-	cytochrome C
130	 50.10	0	161998..163518	-	506	56416500	nuoL2	AM193	-	NADH dehydrogenase I chain L
131	 50.58	0	163888..166542	-	884	56416501	ppdK	AM195	-	pyruvate phosphate dikinase
132	 45.49	-1	166838..167347	-	169	56416502	-	AM197	-	hypothetical protein
133	 49.84	0	167350..167973	-	207	56416503	-	AM198	-	hypothetical protein
134	 49.28	0	168165..169142	-	325	56416504	aspS	AM199	-	asparaginyl-tRNA synthetase
135	 48.37	0	169054..169944	-	296	56416505	aspS	AM200	-	asparaginyl-tRNA synthetase
136	 50.85	0	170363..170950	+	195	56416506	-	AM202	-	hypothetical protein
137	 50.27	0	170965..171891	+	308	56416507	gshB	AM203	-	glutathione synthetase
138	 49.55	0	172027..173031	+	334	56416508	ddlB	AM205	-	D-alanine--D-alanine ligase
139	 47.55	0	173024..173797	+	257	56416509	ftsQ	AM206	-	cell division protein
140	 47.97	0	174038..175438	+	466	56416510	ntrX	AM207	-	nitrogen assimilation regulatory protein
141	 44.62	-1	175825..176214	+	129	56416511	orfX	AM210	-	ORF X
142	 51.88	0	177599..179011	-	470	56416512	gor	AM215	-	glutathione reductase
143	 51.92	0	179210..181738	+	842	56416513	-	AM216	-	hypothetical protein
144	 48.74	0	181807..183273	+	488	56416514	-	AM217	-	hypothetical protein
145	 43.11	-2	183273..183896	+	207	56416515	-	AM218	-	hypothetical protein
146	 48.04	0	183893..184429	+	178	56416516	-	AM219	-	hypothetical protein
147	 49.31	0	184598..185461	+	287	56416517	-	AM220	-	hypothetical protein
148	 48.43	0	185456..186283	-	275	56416518	glnA	AM222	-	glutamine synthetase
149	 49.56	0	186261..187388	-	375	56416519	pstC	AM223	-	ABC-type phosphate transport system, permease component
150	 49.30	0	187473..190121	+	882	56416520	alaS	AM224	-	alanyl-tRNA synthetase
151	 52.54	+1	190828..191712	-	294	56416521	sucD	AM230	-	succinyl-CoA ligase chain A
152	 52.53	+1	191721..192887	-	388	56416522	sucC	AM231	-	succinyl-CoA synthetase beta chain
153	 50.38	0	192990..193253	-	87	161544993	rpsU	AM233	-	30S ribosomal protein S21
154	 50.25	0	193361..194377	-	338	56416524	pstS	AM235	-	phosphate ABC transporter, periplasmic phosphate-binding protein
155	 47.39	0	194437..195069	-	210	56416525	msp5	AM236	-	major surface protein 5
156	 50.93	0	195252..196268	-	338	56416526	-	AM237	-	hypothetical protein
157	 48.80	0	196271..196813	-	180	56416527	cybB	AM238	-	cytochrome b561
158	 48.80	0	197126..198754	+	542	56416528	-	AM240	-	hypothetical protein
159	 50.16	0	198949..200487	-	512	56416529	aprE	AM241	-	alkaline protease secretion protein
160	 47.49	0	200575..201231	-	218	56416530	-	AM242	-	hypothetical protein
161	 49.73	0	201697..203013	+	438	56416531	murD	AM243	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
162	 52.19	0	203038..204363	-	441	56416532	tolB	AM244	-	translocation protein TolB
163	 51.57	0	204370..205998	-	542	56416533	-	AM245	-	hypothetical protein
164	 53.05	+1	206240..206812	+	190	56416534	-	AM247	-	hypothetical protein
165	 51.41	0	206845..208338	+	497	56416535	-	AM248	-	hypothetical protein
166	 55.73	+2	208523..208897	+	124	56416536	rpsL	AM249	-	30S ribosomal protein S12
167	 48.86	0	208915..209397	+	160	56416537	rpsG	AM250	-	30S ribosomal protein S7
168	 50.60	0	209431..211503	+	690	56416538	fusA	AM253	-	elongation factor G
169	 49.58	0	211515..212696	+	393	56416539	tuf	AM254	-	elongation factor Tu
170	 45.07	-1	212796..213008	+	70	56416540	secE	AM255	-	preprotein translocase subunit SecE
171	 48.68	0	212992..213558	+	188	56416541	nusG	AM256	-	transcription antitermination protein
172	 51.13	0	213562..214005	+	147	56416542	rplK	AM258	-	50S ribosomal protein L11
173	 48.89	0	214002..214676	+	224	161544992	rplA	AM259	-	50S ribosomal protein L1
174	 51.42	0	214712..215203	+	163	56416544	rplJ	AM260	-	50S ribosomal protein L10
175	 48.89	0	215328..215732	+	134	56416545	rplL	AM261	-	50S ribosomal protein L7/L12
176	 48.78	0	215769..219917	+	1382	56416546	rpoB	AM262	-	DNA-directed RNA polymerase subunit beta
177	 50.31	0	219929..224176	+	1415	56416547	rpoC	AM263	-	DNA-directed RNA polymerase beta' chain
178	 50.20	0	224173..225192	-	339	56416548	rnhB	AM264	-	ribonuclease HII
179	 51.05	0	225409..228828	+	1139	56416549	-	AM265	-	hypothetical protein
180	 51.59	0	229023..229526	-	167	56416550	-	AM266	-	hypothetical protein
181	 51.18	0	229773..230915	-	380	56416551	-	AM268	-	hypothetical protein
182	 51.52	0	231322..231849	+	175	56416552	-	AM270	-	hypothetical protein
183	 49.10	0	231937..232710	-	257	56416553	-	AM271	-	pantothenate kinase
184	 49.23	0	232717..233886	-	389	56416554	pyrD	AM273	-	dihydroorotate dehydrogenase 2
185	 47.55	0	234047..234637	+	196	56416555	-	AM275	-	hypothetical protein
186	 45.68	-1	234769..235521	+	250	56416556	-	AM276	-	hypothetical protein
187	 49.94	0	235885..236751	+	288	56416557	-	AM279	-	hypothetical protein
188	 53.50	+1	236889..237488	+	199	56416558	pdxH	AM281	-	pyridoxamine 5-phosphate oxidase
189	 50.46	0	237493..238911	-	472	56416559	murE	AM282	-	UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
190	 50.00	0	238895..239110	+	71	56416560	-	AM283	-	hypothetical protein
191	 50.53	0	239132..240358	-	408	56416561	metC	AM284	-	cystathionine beta-lyase
192	 52.74	+1	240312..240785	-	157	56416562	bolA	AM285	-	bolA like protein
193	 50.85	0	240922..241857	+	311	56416563	-	AM286	-	hypothetical protein
194	 47.96	0	242268..245651	+	1127	56416564	dnaE	AM287	-	DNA polymerase III alpha subunit
195	 55.00	+1	245891..247279	+	462	56416565	rrs	AM289	-	3-phosphoshikimate 1-carboxyvinyltransferase
196	 51.04	0	249067..249450	+	127	56416566	sdhC	AM290	-	succinate dehydrogenase cytochrome b556 subunit
197	 50.93	0	249312..249686	-	124	56416567	-	AM291	-	hypothetical protein
198	 49.57	0	249441..249791	+	116	56416568	sdhD	AM292	-	succinate dehyrdrogenase subunit D
199	 53.68	+1	249942..251312	+	456	56416569	pep1	AM294	-	hypothetical protein
200	 51.60	0	251856..252638	-	260	56416570	thiD	AM295	-	phosphomethylpyrimidine kinase
201	 45.95	-1	252646..253311	-	221	56416571	-	AM296	-	hypothetical protein
49.65	MEAN

2.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.