IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 74.55   STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
635	 75.44	0	736057..736956	+	299	86157065	-	Adeh_0637	-	prepilin peptidase
636	 78.88	0	736960..738081	+	373	86157066	-	Adeh_0638	-	periplasmic sensor signal transduction histidine kinase
637	 73.46	0	738097..739464	+	455	86157067	-	Adeh_0639	-	two component, sigma54 specific, Fis family transcriptional regulator
638	 72.96	0	739648..739917	+	89	86157068	-	Adeh_0640	-	XRE family transcriptional regulator
639	 67.80	-1	740017..741075	+	352	86157069	-	Adeh_0641	-	type IV pilus assembly protein PilM
640	 66.84	-1	741078..741659	+	193	86157070	-	Adeh_0642	-	fimbrial assembly
641	 66.51	-1	741665..742294	+	209	86157071	-	Adeh_0643	-	type IV pilus biogenesis protein PilO
642	 73.41	0	742291..742824	+	177	86157072	-	Adeh_0644	-	hypothetical protein
643	 72.93	0	742821..745469	+	882	86157073	-	Adeh_0645	-	type II and III secretion system protein, secretin
644	 69.11	-1	745479..746132	+	217	86157074	-	Adeh_0646	-	hypothetical protein
645	 68.06	-1	746260..746619	+	119	86157075	-	Adeh_0647	-	hypothetical protein
646	 63.35	-2	746716..747288	+	190	86157076	-	Adeh_0648	-	translation elongation factor P (EF-P)
647	 72.59	0	747343..747882	+	179	86157077	-	Adeh_0649	-	biotin carboxyl carrier protein
648	 70.14	0	747899..749281	+	460	86157078	-	Adeh_0650	-	acetyl-CoA carboxylase, biotin carboxylase
649	 76.75	0	749502..752138	+	878	86157079	-	Adeh_0651	-	TPR repeat-containing protein
650	 71.79	0	752147..753064	+	305	86157080	-	Adeh_0652	-	general secretion pathway protein-related protein
651	 77.59	0	753197..757123	+	1308	86157081	-	Adeh_0653	-	hypothetical protein
652	 77.16	0	757105..760191	+	1028	86157082	-	Adeh_0654	-	surface antigen (D15)
653	 75.54	0	760989..761642	-	217	86157083	-	Adeh_0655	-	HAD family hydrolase
654	 69.92	-1	761762..762622	-	286	86157084	-	Adeh_0656	-	hypothetical protein
655	 80.26	+1	762925..763542	-	205	86157085	-	Adeh_0657	-	methyltransferase type 11
656	 79.63	+1	763568..764485	-	305	86157086	-	Adeh_0658	-	Ppx/GppA phosphatase
657	 75.02	0	764497..765801	-	434	86157087	-	Adeh_0659	-	TolB-like protein
658	 75.91	0	765819..766586	-	255	86157088	-	Adeh_0660	-	TonB-like protein
659	 67.99	-1	766583..767035	-	150	86157089	-	Adeh_0661	-	biopolymer transport protein ExbD/TolR
660	 68.82	-1	767052..767795	-	247	86157090	-	Adeh_0662	-	MotA/TolQ/ExbB proton channel
661	 72.45	0	768117..768911	+	264	86157091	-	Adeh_0663	-	hypothetical protein
662	 75.51	0	769031..769810	+	259	86157092	-	Adeh_0664	-	glutamate racemase
663	 67.77	-1	769902..770447	+	181	86157093	-	Adeh_0665	-	hypothetical protein
664	 73.25	0	770488..771186	+	232	86157094	-	Adeh_0666	-	cell division ATP-binding protein FtsE
665	 79.44	+1	771190..772074	+	294	86157095	-	Adeh_0667	-	cell division protein FtsX
666	 79.36	+1	772084..773202	+	372	86157096	-	Adeh_0668	-	peptidase M23B
667	 75.65	0	773231..774544	+	437	86157097	-	Adeh_0669	-	C-terminal processing peptidase-3
668	 68.39	-1	774863..776368	+	501	86157098	-	Adeh_0670	-	glycosyl transferase family protein
669	 77.04	0	776376..776915	-	179	86157099	-	Adeh_0671	-	GCN5-related N-acetyltransferase
670	 79.02	0	777009..777704	-	231	86157100	-	Adeh_0672	-	haloacid dehalogenase-like hydrolase
671	 77.60	0	777701..779035	-	444	86157101	-	Adeh_0673	-	signal recognition particle-docking protein FtsY
672	 73.56	0	779426..783025	-	1199	86157102	-	Adeh_0674	-	condensin subunit Smc
673	 77.94	0	783225..785708	+	827	86157103	-	Adeh_0675	-	methyl-accepting chemotaxis sensory transducer
674	 77.32	0	785730..786743	-	337	86157104	-	Adeh_0676	-	hypothetical protein
675	 73.12	0	786747..787304	-	185	86157105	-	Adeh_0677	-	hypothetical protein
676	 78.47	0	787306..788940	-	544	86157106	-	Adeh_0678	-	fimbrial assembly protein
677	 75.21	0	788945..790396	-	483	86157107	-	Adeh_0679	-	hypothetical protein
678	 73.76	0	790396..791058	-	220	86157108	-	Adeh_0680	-	hypothetical protein
679	 75.44	0	791055..791681	-	208	86157109	-	Adeh_0681	-	hypothetical protein
680	 74.35	0	791678..792289	-	203	86157110	-	Adeh_0682	-	hypothetical protein
681	 66.67	-1	792300..792713	-	137	86157111	-	Adeh_0683	-	general secretion pathway protein G
682	 70.41	0	792716..793945	-	409	86157112	-	Adeh_0684	-	general secretion pathway protein F
683	 70.78	0	793977..795776	-	599	86157113	-	Adeh_0685	-	type II secretion system protein E
684	 72.20	0	795810..798503	-	897	86157114	-	Adeh_0686	-	type II and III secretion system protein
685	 72.26	0	798523..799506	-	327	86157115	-	Adeh_0687	-	hypothetical protein
686	 74.63	0	799693..801123	-	476	86157116	-	Adeh_0688	-	two component, sigma54 specific, Fis family transcriptional regulator
687	 69.40	-1	801524..801889	-	121	86157117	-	Adeh_0689	-	50S ribosomal protein L31P
688	 67.28	-1	802032..803345	-	437	86157118	rho	Adeh_0690	-	transcription termination factor Rho
689	 79.86	+1	803601..805070	+	489	86157119	-	Adeh_0691	-	hypothetical protein
690	 67.62	-1	805067..805588	+	173	86157120	-	Adeh_0692	-	hypothetical protein
691	 74.52	0	805683..807746	+	687	86157121	-	Adeh_0693	-	DNA ligase, NAD-dependent
692	 77.66	0	807750..808031	+	93	86157122	-	Adeh_0694	-	acylphosphatase
693	 73.04	0	808203..810899	+	898	86157123	-	Adeh_0695	-	radical SAM family protein
694	 72.80	0	811086..813692	+	868	86157124	-	Adeh_0696	-	ribonuclease G
695	 72.40	0	813731..815020	+	429	86157125	-	Adeh_0697	-	ribonuclease BN, putative
696	 66.10	-1	815166..815516	+	116	86157126	-	Adeh_0698	-	histone-like DNA-binding protein
697	 79.40	+1	815586..817619	-	677	86157127	-	Adeh_0699	-	type III secretion FHIPEP
698	 82.66	+1	817616..818647	-	343	86157128	-	Adeh_0700	-	type III secretion exporter
699	 82.75	+1	818644..819420	-	258	86157129	-	Adeh_0701	-	type III secretion system inner membrane R protein
700	 77.53	0	819417..819683	-	88	86157130	-	Adeh_0702	-	type III secretion protein HrpO
701	 75.81	0	819686..820363	-	225	86157131	-	Adeh_0703	-	type III secretion system protein
702	 86.67	+2	820360..820719	-	119	86157132	-	Adeh_0704	-	hypothetical protein
703	 80.62	+1	820716..821690	-	324	86157133	-	Adeh_0705	-	surface presentation of antigens (SPOA) protein
704	 81.53	+1	822137..822856	-	239	86157134	-	Adeh_0706	-	secretory protein YscJ/FliF
705	 80.95	+1	822867..823223	-	118	86157135	-	Adeh_0707	-	hypothetical protein
706	 79.77	+1	823327..823845	+	172	86157136	-	Adeh_0708	-	hypothetical protein
707	 73.42	0	823811..825127	+	438	86157137	-	Adeh_0709	-	hypothetical protein
708	 75.25	0	825147..826265	-	372	86157138	-	Adeh_0710	-	hypothetical protein
709	 78.00	0	826315..826905	-	196	86157139	-	Adeh_0711	-	LuxR family transcriptional regulator
710	 78.92	0	827119..828513	+	464	86157140	-	Adeh_0712	-	histidinol dehydrogenase
711	 73.84	0	828510..829136	+	208	86157141	-	Adeh_0713	-	imidazoleglycerol-phosphate dehydratase
712	 76.59	0	829133..829747	+	204	86157142	-	Adeh_0714	-	imidazole glycerol phosphate synthase subunit hisH
713	 75.31	0	829757..830473	+	238	86157143	-	Adeh_0715	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
714	 74.38	0	830492..831256	+	254	86157144	-	Adeh_0716	-	imidazole glycerol phosphate synthase subunit hisF
715	 60.64	-2	831967..832248	+	93	86157145	-	Adeh_0718	-	SSU ribosomal protein S21P
716	 69.78	-1	832260..832709	+	149	86157146	-	Adeh_0719	-	hypothetical protein
717	 75.57	0	832743..834686	+	647	86157147	-	Adeh_0720	-	DNA primase
718	 68.49	-1	834683..837100	+	805	86157148	-	Adeh_0721	-	sigma 70 (RpoD)
719	 71.36	0	837218..838006	+	262	86157149	-	Adeh_0722	-	hypothetical protein
720	 72.78	0	838264..838770	+	168	86157150	-	Adeh_0723	-	ribonuclease H
721	 65.27	-2	839100..839744	+	214	86157151	-	Adeh_0724	-	GPR1/FUN34/yaaH
722	 69.71	-1	839826..840383	-	185	86157152	-	Adeh_0725	-	peptide deformylase
723	 83.76	+2	840478..843204	-	908	86157153	-	Adeh_0726	-	hypothetical protein
724	 77.88	0	843327..845537	-	736	86157154	-	Adeh_0727	-	replication restart DNA helicase PriA
725	 80.06	+1	845610..846251	+	213	86157155	-	Adeh_0728	-	hypothetical protein
726	 75.86	0	846290..846931	-	213	86157156	-	Adeh_0729	-	hypothetical protein
727	 73.97	0	846966..848279	-	437	86157157	-	Adeh_0730	-	recombination factor protein RarA
728	 70.45	0	848325..849143	+	272	86157158	-	Adeh_0731	-	NAD(+) kinase
729	 78.64	0	849205..851025	+	606	86157159	-	Adeh_0732	-	DNA repair protein RecN
730	 71.45	0	851171..851965	+	264	86157160	-	Adeh_0733	-	serine/threonine phosphatase
731	 70.48	0	852159..853076	+	305	86157161	-	Adeh_0734	-	peptidase M23B
732	 80.12	+1	853139..853822	-	227	86157162	-	Adeh_0735	-	hypothetical protein
733	 68.43	-1	854032..856920	+	962	86157163	-	Adeh_0736	-	protein translocase subunit secA
734	 78.27	0	857268..858560	-	430	86157164	-	Adeh_0737	-	hypothetical protein
74.55	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.