IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
549	 72.37	0	639402..640313	-	303	86156979	-	Adeh_0551	-	short chain dehydrogenase
550	 72.38	0	640515..642002	+	495	86156980	-	Adeh_0552	-	major facilitator transporter
551	 70.18	0	642201..643394	+	397	86156981	-	Adeh_0553	-	parallel beta-helix repeat-containing protein
552	 68.73	-1	643503..644036	-	177	86156982	-	Adeh_0554	-	hypothetical protein
553	 76.83	0	644323..644745	-	140	86156983	-	Adeh_0555	-	hypothetical protein
554	 79.08	+1	644742..645023	-	93	86156984	-	Adeh_0556	-	hypothetical protein
555	 75.15	0	645016..645522	-	168	86156985	-	Adeh_0557	-	sigma-24 (FecI-like)
556	 79.38	+1	645699..646343	+	214	86156986	-	Adeh_0558	-	hypothetical protein
557	 79.03	0	646373..646744	+	123	86156987	-	Adeh_0559	-	hypothetical protein
558	 73.87	0	646963..649308	-	781	86156988	-	Adeh_0560	-	hypothetical protein
559	 68.24	-1	649314..649886	+	190	86156989	-	Adeh_0561	-	hypothetical protein
560	 71.72	0	649902..650633	-	243	86156990	-	Adeh_0562	-	DNA mismatch repair protein MutS-like
561	 58.91	-2	651423..652646	-	407	86156991	-	Adeh_0563	-	response regulator receiver domain-containing protein
562	 60.14	-2	652643..653056	-	137	86156992	-	Adeh_0564	-	response regulator receiver domain-containing protein
563	 60.20	-2	653101..656580	-	1159	86156993	-	Adeh_0565	-	hypothetical protein
564	 67.10	-1	656671..657132	-	153	86156994	-	Adeh_0566	-	hypothetical protein
565	 75.97	0	657850..660546	+	898	86156995	-	Adeh_0567	-	RNA polymerase associated protein rapA
566	 75.54	0	660700..661815	-	371	86156996	-	Adeh_0568	-	acetylornithine deacetylase
567	 79.54	+1	661861..663258	-	465	86156997	-	Adeh_0569	-	N-formimino-L-glutamate deiminase
568	 77.90	0	663416..664216	+	266	86156998	-	Adeh_0570	-	diaminopimelate epimerase
569	 74.91	0	664217..666085	+	622	86156999	-	Adeh_0571	-	putative GAF sensor protein
570	 77.23	0	666098..667564	+	488	86157000	-	Adeh_0572	-	response regulator receiver domain-containing protein
571	 76.78	0	667574..668374	+	266	86157001	-	Adeh_0573	-	phenazine biosynthesis PhzC/PhzF protein
572	 77.04	0	668402..668719	-	105	86157002	-	Adeh_0574	-	hypothetical protein
573	 73.10	0	668818..669252	-	144	86157003	-	Adeh_0575	-	hemerythrin-like, metal-binding protein
574	 75.11	0	669411..670832	-	473	86157004	-	Adeh_0576	-	peptidase M16-like
575	 74.79	0	670829..672379	-	516	86157005	-	Adeh_0577	-	periplasmic sensor signal transduction histidine kinase
576	 78.28	0	672547..673416	+	289	86157006	-	Adeh_0578	-	hypothetical protein
577	 74.32	0	673577..674203	-	208	86157007	-	Adeh_0579	-	hypothetical protein
578	 74.83	0	674284..675288	+	334	86157008	-	Adeh_0580	-	DeoR family transcriptional regulator
579	 78.62	0	675285..676388	+	367	86157009	-	Adeh_0581	-	transcriptional regulator-like
580	 76.67	0	676444..676953	+	169	86157010	-	Adeh_0582	-	response regulator receiver domain-containing protein
581	 76.19	0	676966..677847	-	293	86157011	-	Adeh_0583	-	NAD-binding 6-phosphogluconate dehydrogenase
582	 73.15	0	678020..679222	+	400	86157012	-	Adeh_0584	-	UDP-galactopyranose mutase
583	 75.56	0	679223..680257	-	344	86157013	-	Adeh_0585	-	hypothetical protein
584	 79.88	+1	680328..680819	-	163	86157014	-	Adeh_0586	-	ArgR family transcriptional regulator
585	 73.15	0	680816..682912	-	698	86157015	-	Adeh_0587	-	N-acetylglutamate synthase / glutamate N-acetyltransferase / N-acetylglutamate kinase
586	 76.78	0	682915..683952	-	345	86157016	-	Adeh_0588	-	N-acetyl-gamma-glutamyl-phosphate reductase
587	 79.50	+1	684635..685522	+	295	86157017	-	Adeh_0589	-	hypothetical protein
588	 82.13	+1	685748..687745	-	665	86157018	-	Adeh_0590	-	PE-PGRS family protein
589	 73.87	0	688031..689446	-	471	86157019	-	Adeh_0591	-	cytochrome c biogenesis protein, transmembrane region/thioredoxin-related
590	 69.14	-1	689605..690819	+	404	86157020	-	Adeh_0592	-	aminotransferase, class V
591	 66.23	-1	690876..691337	+	153	86157021	-	Adeh_0593	-	scaffold protein
592	 69.97	-1	691350..691682	+	110	86157022	-	Adeh_0594	-	HesB/YadR/YfhF
593	 72.82	0	691773..692390	+	205	86157023	-	Adeh_0595	-	co-chaperone Hsc20
594	 73.78	0	692336..694303	-	655	86157024	-	Adeh_0596	-	putative NAD-specific glutamate dehydrogenase
595	 74.06	0	692414..694294	+	626	86157025	hscA	Adeh_0597	-	chaperone protein HscA
596	 73.86	0	694296..694601	+	101	86157026	-	Adeh_0598	-	ferredoxin
597	 69.23	-1	694630..694824	+	64	86157027	-	Adeh_0599	-	hypothetical protein
598	 77.14	0	694829..695878	-	349	86157028	-	Adeh_0600	-	response regulator receiver (CheY-like) modulated CheB methylesterase
599	 73.56	0	695889..696788	-	299	86157029	-	Adeh_0601	-	MCP methyltransferase, CheR-type
600	 73.33	0	696785..697369	-	194	86157030	-	Adeh_0602	-	CheW protein
601	 75.60	0	697396..699051	-	551	86157031	-	Adeh_0603	-	CheA signal transduction histidine kinase
602	 76.74	0	699062..699577	-	171	86157032	-	Adeh_0604	-	CheD, stimulates methylation of MCP proteins
603	 76.67	0	699580..700389	-	269	86157033	-	Adeh_0605	-	GAF domain-containing protein
604	 67.47	-1	700406..700777	-	123	86157034	-	Adeh_0606	-	response regulator receiver domain-containing protein
605	 82.20	+1	701194..701856	+	220	86157035	-	Adeh_0607	-	hypothetical protein
606	 82.03	+1	701853..702809	+	318	86157036	-	Adeh_0608	-	hypothetical protein
607	 71.53	0	702816..703391	-	191	86157037	-	Adeh_0609	-	response regulator receiver domain-containing protein
608	 77.91	0	703584..704072	+	162	86157038	-	Adeh_0610	-	CheW protein
609	 75.94	0	704069..704467	+	132	86157039	-	Adeh_0611	-	hypothetical protein
610	 71.59	0	704482..705741	+	419	86157040	-	Adeh_0612	-	methyl-accepting chemotaxis sensory transducer
611	 75.90	0	705772..708024	+	750	86157041	-	Adeh_0613	-	CheA signal transduction histidine kinase
612	 78.17	0	708021..709046	+	341	86157042	-	Adeh_0614	-	response regulator receiver (CheY-like) modulated CheB methylesterase
613	 76.85	0	709043..710545	+	500	86157043	-	Adeh_0615	-	MCP methyltransferase, CheR-type
614	 64.58	-2	710582..710965	+	127	86157044	-	Adeh_0616	-	response regulator receiver domain-containing protein
615	 76.30	0	711060..712367	+	435	86157045	-	Adeh_0617	-	thymidine phosphorylase
616	 75.74	0	712364..713212	+	282	86157046	-	Adeh_0618	-	inosine, guanosine, xanthosine phosphorylase
617	 74.86	0	713259..713612	+	117	86157047	-	Adeh_0619	-	hypothetical protein
618	 80.99	+1	713617..714021	+	134	86157048	-	Adeh_0620	-	cytidine deaminase
619	 76.85	0	714097..715068	+	323	86157049	-	Adeh_0621	-	FMN adenylyltransferase / riboflavin kinase
620	 66.26	-1	715243..716949	+	568	86157050	-	Adeh_0622	-	type II secretion system protein E
621	 67.76	-1	716963..718063	+	366	86157051	-	Adeh_0623	-	twitching motility protein
622	 66.91	-1	718132..719385	+	417	86157052	-	Adeh_0624	-	type II secretion system protein
623	 74.45	0	719399..720979	+	526	86157053	-	Adeh_0625	-	multi-sensor signal transduction histidine kinase
624	 73.03	0	720992..722374	+	460	86157054	-	Adeh_0626	-	two component, sigma54 specific, Fis family transcriptional regulator
625	 69.88	-1	722396..727564	-	1722	86157055	-	Adeh_0627	-	Tfp pilus assembly protein tip-associated adhesin PilY1-like
626	 69.25	-1	727575..728078	-	167	86157056	-	Adeh_0628	-	hypothetical protein
627	 71.31	0	728091..729362	-	423	86157057	-	Adeh_0629	-	hypothetical protein
628	 71.64	0	729367..729969	-	200	86157058	-	Adeh_0630	-	hypothetical protein
629	 72.75	0	729966..730622	-	218	86157059	-	Adeh_0631	-	hypothetical protein
630	 75.07	0	730800..732500	-	566	86157060	-	Adeh_0632	-	tetratricopeptide protein)
631	 71.78	0	732511..733272	-	253	86157061	-	Adeh_0633	-	hypothetical protein
632	 73.62	0	733269..734189	-	306	86157062	-	Adeh_0634	-	hypothetical protein
633	 70.46	0	734265..734975	-	236	86157063	-	Adeh_0635	-	fimbrial protein pilin
634	 72.83	0	735098..736054	+	318	86157064	-	Adeh_0636	-	ABC transporter, ATPase subunit
635	 75.44	0	736057..736956	+	299	86157065	-	Adeh_0637	-	prepilin peptidase
636	 78.88	0	736960..738081	+	373	86157066	-	Adeh_0638	-	periplasmic sensor signal transduction histidine kinase
637	 73.46	0	738097..739464	+	455	86157067	-	Adeh_0639	-	two component, sigma54 specific, Fis family transcriptional regulator
638	 72.96	0	739648..739917	+	89	86157068	-	Adeh_0640	-	XRE family transcriptional regulator
639	 67.80	-1	740017..741075	+	352	86157069	-	Adeh_0641	-	type IV pilus assembly protein PilM
640	 66.84	-1	741078..741659	+	193	86157070	-	Adeh_0642	-	fimbrial assembly
641	 66.51	-1	741665..742294	+	209	86157071	-	Adeh_0643	-	type IV pilus biogenesis protein PilO
642	 73.41	0	742291..742824	+	177	86157072	-	Adeh_0644	-	hypothetical protein
643	 72.93	0	742821..745469	+	882	86157073	-	Adeh_0645	-	type II and III secretion system protein, secretin
644	 69.11	-1	745479..746132	+	217	86157074	-	Adeh_0646	-	hypothetical protein
645	 68.06	-1	746260..746619	+	119	86157075	-	Adeh_0647	-	hypothetical protein
646	 63.35	-2	746716..747288	+	190	86157076	-	Adeh_0648	-	translation elongation factor P (EF-P)
647	 72.59	0	747343..747882	+	179	86157077	-	Adeh_0649	-	biotin carboxyl carrier protein
648	 70.14	0	747899..749281	+	460	86157078	-	Adeh_0650	-	acetyl-CoA carboxylase, biotin carboxylase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.