IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4143	 70.29	0	4781411..4782652	+	413	86160573	-	Adeh_4157	-	ABC transporter, inner membrane subunit
4144	 71.88	0	4782667..4783356	+	229	86160574	-	Adeh_4158	-	signal peptidase I
4145	 71.44	0	4783828..4784832	+	334	86160575	-	Adeh_4159	-	HNH endonuclease
4146	 79.25	+1	4784950..4786491	-	513	86160576	ligB	Adeh_4160	-	ATP-dependent DNA ligase
4147	 80.25	+1	4786502..4786972	-	156	86160577	-	Adeh_4161	-	peptidase M52, hydrogen uptake protein
4148	 75.69	0	4787124..4788608	-	494	86160578	-	Adeh_4162	-	nickel-dependent hydrogenase, large subunit
4149	 78.86	0	4788605..4790080	-	491	86160579	-	Adeh_4163	-	methyl-viologen-reducing hydrogenase, delta subunit
4150	 80.41	+1	4790077..4791975	-	632	86160580	-	Adeh_4164	-	CoB--CoM heterodisulfide reductase subunit A
4151	 71.02	0	4792523..4792981	-	152	86160581	-	Adeh_4165	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
4152	 66.49	-1	4793108..4793662	-	184	86160582	-	Adeh_4166	-	sigma 54 modulation protein / SSU ribosomal protein S30P
4153	 65.67	-1	4793919..4795424	-	501	86160583	-	Adeh_4167	-	sigma-54 (RpoN)
4154	 73.57	0	4795421..4796188	-	255	86160584	-	Adeh_4168	-	ABC transporter, ATPase subunit
4155	 76.98	0	4796185..4796727	-	180	86160585	-	Adeh_4169	-	hypothetical protein
4156	 76.43	0	4796724..4797266	-	180	86160586	-	Adeh_4170	-	hypothetical protein
4157	 75.66	0	4797323..4798300	-	325	86160587	-	Adeh_4171	-	lipid A biosynthesis acyltransferase
4158	 76.16	0	4798372..4798866	-	164	86160588	-	Adeh_4172	-	phosphatase kdsC
4159	 74.13	0	4798863..4799693	-	276	86160589	-	Adeh_4173	-	2-dehydro-3-deoxyphosphooctonate aldolase
4160	 68.11	-1	4799697..4801364	-	555	86160590	-	Adeh_4174	-	CTP synthetase
4161	 75.99	0	4801379..4802107	-	242	86160591	-	Adeh_4175	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
4162	 77.38	0	4802258..4803358	+	366	86160592	-	Adeh_4176	-	UDP-N-acetylglucosamine 2-epimerase
4163	 75.76	0	4803413..4804369	+	318	86160593	-	Adeh_4177	-	pseudouridine synthase, RluD
4164	 81.23	+1	4804366..4804722	+	118	86160594	-	Adeh_4178	-	hypothetical protein
4165	 72.42	0	4804719..4805396	-	225	86160595	-	Adeh_4179	-	tRNA/rRNA methyltransferase, SpoU
4166	 73.43	0	4805393..4806457	-	354	86160596	obgE	Adeh_4180	-	GTPase ObgE
4167	 68.60	-1	4806551..4806808	-	85	86160597	rpmA	Adeh_4181	-	50S ribosomal protein L27
4168	 66.34	-1	4806833..4807138	-	101	86160598	rplU	Adeh_4182	-	50S ribosomal protein L21
4169	 73.62	0	4807304..4807792	+	162	86160599	-	Adeh_4183	-	hypothetical protein
4170	 74.41	0	4807871..4808335	-	154	86160600	-	Adeh_4184	-	hypothetical protein
4171	 77.67	0	4808397..4809314	-	305	86160601	-	Adeh_4185	-	K+ channel, inward rectifier
4172	 78.43	0	4809379..4810398	-	339	86160602	-	Adeh_4186	-	translation initiation factor 2B subunit I
4173	 71.96	0	4810613..4812067	-	484	86160603	gatB	Adeh_4187	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
4174	 75.32	0	4812069..4813547	-	492	86160604	-	Adeh_4188	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
4175	 74.83	0	4813544..4813837	-	97	86160605	-	Adeh_4189	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
4176	 64.33	-2	4813845..4814186	-	113	86160606	-	Adeh_4190	-	hypothetical protein
4177	 80.32	+1	4814183..4815361	-	392	86160607	-	Adeh_4191	-	zinc finger/thioredoxin putative
4178	 73.79	0	4815519..4818311	+	930	86160608	-	Adeh_4192	-	cell division FtsK/SpoIIIE
4179	 72.29	0	4818431..4819177	+	248	86160609	-	Adeh_4193	-	OmpA/MotB family outer membrane protein
4180	 75.08	0	4819724..4820329	-	201	86160610	-	Adeh_4194	-	acyl-phosphate glycerol-3-phosphate acyltransferase
4181	 78.26	0	4820326..4820739	-	137	86160611	-	Adeh_4195	-	hypothetical protein
4182	 78.70	0	4820736..4821815	-	359	86160612	-	Adeh_4196	-	hypothetical protein
4183	 68.67	-1	4821864..4822163	-	99	86160613	-	Adeh_4197	-	NADH-ubiquinone oxidoreductase, chain 4L
4184	 67.65	-1	4822163..4822669	-	168	86160614	-	Adeh_4198	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
4185	 70.06	0	4822673..4823998	-	441	86160615	-	Adeh_4199	-	NADH-quinone oxidoreductase, F subunit
4186	 67.83	-1	4823995..4824510	-	171	86160616	-	Adeh_4200	-	NADH-quinone oxidoreductase, E subunit
4187	 71.61	0	4824566..4825354	+	262	86160617	-	Adeh_4201	-	response regulator receiver domain-containing protein
4188	 76.62	0	4825576..4826007	-	143	86160618	-	Adeh_4202	-	GCN5-related N-acetyltransferase
4189	 67.71	-1	4826107..4826394	-	95	86160619	-	Adeh_4203	-	histone-like DNA-binding protein
4190	 73.11	0	4826579..4827835	-	418	86160620	-	Adeh_4204	-	hypothetical protein
4191	 81.97	+1	4828652..4829455	+	267	86160621	-	Adeh_4205	-	hypothetical protein
4192	 71.88	0	4829460..4830917	-	485	86160622	-	Adeh_4206	-	amidophosphoribosyltransferase
4193	 80.05	+1	4831077..4832309	+	410	86160623	-	Adeh_4207	-	hypothetical protein
4194	 71.30	0	4832316..4832768	-	150	86160624	-	Adeh_4208	-	thioesterase-like
4195	 79.77	+1	4832863..4834533	-	556	86160625	-	Adeh_4209	-	hypothetical protein
4196	 72.40	0	4834530..4836080	-	516	86160626	-	Adeh_4210	-	hypothetical protein
4197	 80.83	+1	4836091..4836768	-	225	86160627	-	Adeh_4211	-	hypothetical protein
4198	 78.03	0	4837059..4838924	+	621	86160628	-	Adeh_4212	-	hypothetical protein
4199	 79.64	+1	4838918..4840381	-	487	86160629	-	Adeh_4213	-	response regulator receiver domain-containing protein
4200	 73.25	0	4840468..4842747	-	759	86160630	-	Adeh_4214	-	phosphoribosylformylglycinamidine synthase II
4201	 76.00	0	4842890..4843693	-	267	86160631	-	Adeh_4215	-	hypothetical protein
4202	 78.71	0	4843748..4845607	-	619	86160632	-	Adeh_4216	-	superfamily I DNA/RNA helicase
4203	 77.73	0	4846101..4848161	+	686	86160633	-	Adeh_4217	-	multi-sensor hybrid histidine kinase
4204	 78.30	0	4848411..4849244	-	277	86160634	-	Adeh_4218	-	phosphoesterase, PA-phosphatase related
4205	 77.39	0	4849323..4849583	+	86	86160635	-	Adeh_4219	-	Smr protein/MutS2-like
4206	 81.83	+1	4849571..4850797	-	408	86160636	-	Adeh_4220	-	threonyl/alanyl tRNA synthetase, SAD
4207	 75.60	0	4850809..4851312	+	167	86160637	-	Adeh_4221	-	putative sigma 54 modulation protein/ribosomal protein S30EA
4208	 74.79	0	4851562..4853445	-	627	86160638	-	Adeh_4222	-	signal transduction histidine kinase, nitrogen specific, NtrB
4209	 80.70	+1	4853442..4855436	-	664	86160639	-	Adeh_4223	-	hypothetical protein
4210	 88.00	+2	4855414..4856013	-	199	86160640	-	Adeh_4224	-	hypothetical protein
4211	 76.96	0	4856010..4856747	-	245	86160641	-	Adeh_4225	-	histidine kinase
4212	 75.08	0	4856758..4858599	-	613	86160642	-	Adeh_4226	-	periplasmic sensor signal transduction histidine kinase
4213	 65.72	-1	4858897..4859532	+	211	86160643	-	Adeh_4227	-	hypothetical protein
4214	 69.41	-1	4859572..4860630	+	352	86160644	-	Adeh_4228	-	phosphate transporter
4215	 73.76	0	4860634..4861563	-	309	86160645	-	Adeh_4229	-	radical SAM family protein
4216	 81.48	+1	4861679..4862164	+	161	86160646	-	Adeh_4230	-	hypothetical protein
4217	 77.72	0	4862109..4862732	-	207	86160647	-	Adeh_4231	-	DNA-3-methyladenine glycosylase
4218	 75.16	0	4862847..4863482	+	211	86160648	-	Adeh_4232	-	hypothetical protein
4219	 75.25	0	4863472..4864263	+	263	86160649	-	Adeh_4233	-	hypothetical protein
4220	 73.61	0	4864276..4865745	+	489	86160650	-	Adeh_4234	-	pyruvate kinase
4221	 73.42	0	4865774..4866958	+	394	86160651	-	Adeh_4235	-	peptidase M24
4222	 80.31	+1	4866993..4868495	+	500	86160652	-	Adeh_4236	-	Beta-lactamase-like
4223	 75.32	0	4868635..4869177	+	180	86160653	-	Adeh_4237	-	hypothetical protein
4224	 78.44	0	4869405..4869956	-	183	86160654	-	Adeh_4238	-	hypothetical protein
4225	 78.98	0	4870086..4870613	-	175	86160655	-	Adeh_4239	-	hypothetical protein
4226	 73.48	0	4870610..4872019	-	469	86160656	-	Adeh_4240	-	two component, sigma54 specific, Fis family transcriptional regulator
4227	 71.49	0	4872212..4874077	+	621	86160657	-	Adeh_4241	-	FtsH-2 peptidase
4228	 75.15	0	4874175..4875683	+	502	86160658	-	Adeh_4242	-	cardiolipin synthetase 2
4229	 79.39	+1	4875821..4876732	+	303	86160659	-	Adeh_4243	-	hypothetical protein
4230	 78.71	0	4876838..4878157	+	439	86160660	-	Adeh_4244	-	membrane protein
4231	 78.03	0	4878147..4878665	+	172	86160661	-	Adeh_4245	-	hypothetical protein
4232	 79.01	0	4878669..4880078	-	469	86160662	-	Adeh_4246	-	periplasmic sensor signal transduction histidine kinase
4233	 75.88	0	4880132..4881205	-	357	86160663	-	Adeh_4247	-	Alpha/beta hydrolase fold-1
4234	 68.14	-1	4881566..4881904	+	112	86160664	-	Adeh_4248	-	nitrogen regulatory protein P-II
4235	 74.89	0	4882581..4883042	+	153	86160665	-	Adeh_4249	-	histidine kinase
4236	 75.14	0	4883161..4884612	+	483	86160666	-	Adeh_4250	-	two component, sigma54 specific, Fis family transcriptional regulator
4237	 80.29	+1	4884671..4885228	-	185	86160667	-	Adeh_4251	-	hypothetical protein
4238	 66.04	-1	4885484..4886908	+	474	86160668	-	Adeh_4252	-	L-glutamine synthetase
4239	 80.78	+1	4886979..4887623	-	214	86160669	-	Adeh_4253	-	hypothetical protein
4240	 74.45	0	4887794..4888114	+	106	86160670	-	Adeh_4254	-	small multidrug resistance protein
4241	 76.11	0	4888202..4889461	+	419	86160671	-	Adeh_4255	-	major facilitator transporter
4242	 84.27	+2	4889558..4890682	+	374	86160672	-	Adeh_4256	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.