IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3647	 76.50	0	4193094..4194659	+	521	86160077	-	Adeh_3659	-	NADH-ubiquinone oxidoreductase, chain 49kDa
3648	 76.01	0	4194656..4195426	+	256	86160078	-	Adeh_3660	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
3649	 76.88	0	4195439..4195771	-	110	86160079	-	Adeh_3661	-	phage shock protein C, PspC
3650	 77.00	0	4195812..4196450	-	212	86160080	-	Adeh_3662	-	methyltransferase
3651	 78.32	0	4196553..4197041	+	162	86160081	-	Adeh_3663	-	GCN5-related N-acetyltransferase
3652	 74.25	0	4197223..4198698	-	491	86160082	-	Adeh_3664	-	nicotinate phosphoribosyltransferase related
3653	 72.16	0	4198799..4201636	+	945	86160083	-	Adeh_3665	-	aconitase
3654	 75.82	0	4201757..4202062	+	101	86160084	-	Adeh_3666	-	hypothetical protein
3655	 77.71	0	4202077..4202574	-	165	86160085	-	Adeh_3667	-	hypothetical protein
3656	 77.32	0	4202585..4203832	-	415	86160086	-	Adeh_3668	-	Sodium/hydrogen exchanger
3657	 75.51	0	4204150..4204590	+	146	86160087	-	Adeh_3669	-	hypothetical protein
3658	 65.77	-1	4205041..4206372	+	443	86160088	-	Adeh_3670	-	type I citrate synthase
3659	 78.13	0	4206526..4207746	-	406	86160089	-	Adeh_3671	-	hypothetical protein
3660	 75.57	0	4207930..4208277	-	115	86160090	-	Adeh_3672	-	hypothetical protein
3661	 74.74	0	4208712..4209938	+	408	86160091	-	Adeh_3673	-	ribosomal protein S1
3662	 70.98	0	4210334..4210588	+	84	86160092	-	Adeh_3674	-	hypothetical protein
3663	 77.24	0	4210626..4212290	-	554	86160093	-	Adeh_3675	-	malto-oligosyltrehalose trehalohydrolase
3664	 68.96	-1	4212535..4214325	+	596	86160094	-	Adeh_3676	-	phosphoenolpyruvate carboxykinase
3665	 78.40	0	4214432..4215181	+	249	86160095	-	Adeh_3677	-	hypothetical protein
3666	 69.64	-1	4215217..4215552	+	111	86160096	-	Adeh_3678	-	hypothetical protein
3667	 79.96	+1	4215806..4216753	-	315	86160097	-	Adeh_3679	-	HD-GYP domain-containing protein
3668	 72.76	0	4216832..4217323	-	163	86160098	smpB	Adeh_3680	-	SsrA-binding protein
3669	 76.67	0	4217320..4218189	-	289	86160099	-	Adeh_3681	-	pantothenate synthetase
3670	 73.20	0	4218214..4219131	-	305	86160100	-	Adeh_3682	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3671	 67.59	-1	4219199..4219846	-	215	86160101	-	Adeh_3683	-	deoxynucleoside kinase
3672	 70.04	0	4220080..4220346	+	88	86160102	-	Adeh_3684	-	hypothetical protein
3673	 78.01	0	4220442..4221296	-	284	86160103	-	Adeh_3685	-	dimethyladenosine transferase
3674	 72.78	0	4221352..4221678	-	108	86160104	-	Adeh_3686	-	hypothetical protein
3675	 74.83	0	4221770..4222774	-	334	86160105	-	Adeh_3687	-	O-sialoglycoprotein endopeptidase
3676	 77.84	0	4222992..4225148	-	718	86160106	-	Adeh_3688	-	response regulator receiver domain-containing protein
3677	 79.68	+1	4225286..4227121	-	611	86160107	-	Adeh_3689	-	hypothetical protein
3678	 77.92	0	4227148..4228089	+	313	86160108	-	Adeh_3690	-	hypothetical protein
3679	 74.19	0	4228156..4228926	+	256	86160109	-	Adeh_3691	-	serine/threonine phosphatase
3680	 81.21	+1	4228941..4229978	-	345	86160110	-	Adeh_3692	-	nucleotidyl transferase
3681	 78.31	0	4229999..4231192	+	397	86160111	-	Adeh_3693	-	major facilitator transporter
3682	 77.61	0	4231205..4231807	-	200	86160112	-	Adeh_3694	-	exonuclease
3683	 76.55	0	4231828..4233639	-	603	86160113	-	Adeh_3695	-	cyclic nucleotide-binding protein
3684	 73.99	0	4233693..4235441	-	582	86160114	-	Adeh_3696	-	SSS family solute/sodium (Na+) symporter
3685	 71.32	0	4235445..4235702	-	85	86160115	-	Adeh_3697	-	hypothetical protein
3686	 66.08	-1	4236050..4237741	+	563	86160116	-	Adeh_3698	-	major facilitator superfamily transporter
3687	 75.67	0	4237911..4239320	-	469	86160117	-	Adeh_3699	-	serine/threonine protein kinase
3688	 77.95	0	4239317..4240069	-	250	86160118	-	Adeh_3700	-	metallophosphoesterase
3689	 70.77	0	4240060..4240473	-	137	86160119	-	Adeh_3701	-	hypothetical protein
3690	 63.77	-2	4240522..4240866	+	114	86160120	-	Adeh_3702	-	hypothetical protein
3691	 67.90	-1	4240895..4242520	+	541	86160121	-	Adeh_3703	-	SSS family solute/sodium (Na+) symporter
3692	 75.12	0	4242635..4244314	-	559	86160122	-	Adeh_3704	-	methyl-accepting chemotaxis sensory transducer
3693	 74.40	0	4244567..4245613	-	348	86160123	-	Adeh_3705	-	aminoglycoside phosphotransferase
3694	 68.26	-1	4245727..4247106	+	459	86160124	-	Adeh_3706	-	cystathionine beta-synthase
3695	 72.29	0	4247134..4248306	+	390	86160125	-	Adeh_3707	-	cystathionine gamma-lyase
3696	 79.91	+1	4248221..4248877	-	218	86160126	-	Adeh_3708	-	hypothetical protein
3697	 76.37	0	4248972..4250198	-	408	86160127	-	Adeh_3709	-	major facilitator transporter
3698	 76.80	0	4250195..4251664	-	489	86160128	-	Adeh_3710	-	EmrB/QacA family drug resistance transporter
3699	 71.43	0	4251769..4251999	-	76	86160129	-	Adeh_3711	-	hypothetical protein
3700	 74.10	0	4252091..4254175	+	694	86160130	-	Adeh_3712	-	hypothetical protein
3701	 78.73	0	4254195..4254509	-	104	86160131	-	Adeh_3713	-	hypothetical protein
3702	 81.79	+1	4254543..4254899	+	118	86160132	-	Adeh_3714	-	hypothetical protein
3703	 77.39	0	4254854..4256932	-	692	86160133	-	Adeh_3715	-	glycogen debranching enzyme
3704	 78.55	0	4256929..4258839	-	636	86160134	-	Adeh_3716	-	malto-oligosyltrehalose trehalohydrolase
3705	 84.92	+2	4258927..4259808	+	293	86160135	-	Adeh_3717	-	hypothetical protein
3706	 77.74	0	4260012..4261592	+	526	86160136	-	Adeh_3718	-	methyl-accepting chemotaxis sensory transducer
3707	 76.53	0	4261630..4262694	+	354	86160137	-	Adeh_3719	-	NADH-flavin oxidoreductase/NADH oxidase
3708	 72.12	0	4262710..4265001	-	763	86160138	-	Adeh_3720	-	putative nitric-oxide reductase
3709	 76.17	0	4265192..4266043	+	283	86160139	-	Adeh_3721	-	Beta-lactamase-like
3710	 74.27	0	4266102..4267271	+	389	86160140	-	Adeh_3722	-	SAM-dependent methyltransferase
3711	 75.62	0	4267371..4269515	+	714	86160141	-	Adeh_3723	-	cyclic nucleotide-binding domain-containing protein
3712	 75.77	0	4269526..4271304	+	592	86160142	-	Adeh_3724	-	multi-sensor signal transduction histidine kinase
3713	 76.62	0	4271383..4272045	+	220	86160143	-	Adeh_3725	-	O-methyltransferase family protein
3714	 75.86	0	4272064..4273086	-	340	86160144	-	Adeh_3726	-	tRNA synthetase, class II (D, K and N)
3715	 82.87	+1	4273157..4274791	+	544	86160145	-	Adeh_3727	-	hypothetical protein
3716	 78.61	0	4274865..4276706	+	613	86160146	-	Adeh_3728	-	signal transduction histidine kinase, nitrogen specific, NtrB
3717	 77.11	0	4276703..4278157	+	484	86160147	-	Adeh_3729	-	two component, sigma54 specific, Fis family transcriptional regulator
3718	 71.36	0	4278401..4279741	+	446	86160148	-	Adeh_3730	-	cytochrome bd ubiquinol oxidase, subunit I
3719	 72.95	0	4279755..4280804	+	349	86160149	-	Adeh_3731	-	cytochrome d ubiquinol oxidase, subunit II
3720	 81.07	+1	4280885..4281745	+	286	86160150	-	Adeh_3732	-	Alpha/beta hydrolase fold-1
3721	 82.13	+1	4281742..4282530	+	262	86160151	-	Adeh_3733	-	methyltransferase type 11
3722	 78.76	0	4282600..4283277	+	225	86160152	-	Adeh_3734	-	hypothetical protein
3723	 73.96	0	4283443..4284141	+	232	86160153	-	Adeh_3735	-	sigma-24 (FecI-like)
3724	 80.84	+1	4284138..4284758	+	206	86160154	-	Adeh_3736	-	glycoside hydrolase family protein
3725	 81.21	+1	4284761..4285654	+	297	86160155	-	Adeh_3737	-	hypothetical protein
3726	 76.50	0	4285648..4286013	+	121	86160156	-	Adeh_3738	-	hypothetical protein
3727	 82.83	+1	4286062..4286958	+	298	86160157	-	Adeh_3739	-	hypothetical protein
3728	 72.52	0	4287020..4288795	+	591	86160158	-	Adeh_3740	-	serine/threonine protein kinase
3729	 83.06	+1	4288816..4289553	+	245	86160159	-	Adeh_3741	-	FHA domain-containing protein
3730	 78.45	0	4289561..4290349	-	262	86160160	-	Adeh_3742	-	enoyl-CoA hydratase/isomerase
3731	 69.01	-1	4290346..4290558	-	70	86160161	-	Adeh_3743	-	biotin/lipoyl attachment protein
3732	 74.89	0	4290701..4291174	+	157	86160162	-	Adeh_3744	-	thioesterase superfamily protein
3733	 74.97	0	4291277..4292119	-	280	86160163	-	Adeh_3745	-	response regulator receiver domain-containing protein
3734	 76.46	0	4292304..4293161	+	285	86160164	-	Adeh_3746	-	short-chain dehydrogenase/reductase SDR
3735	 72.01	0	4293247..4294875	-	542	86160165	-	Adeh_3747	-	OmpA/MotB family outer membrane protein
3736	 70.43	0	4295113..4296468	+	451	86160166	-	Adeh_3748	-	tryptophan synthase subunit beta
3737	 67.08	-1	4296694..4297659	+	321	86160167	-	Adeh_3749	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
3738	 70.86	0	4297662..4298471	+	269	86160168	-	Adeh_3750	-	ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit
3739	 71.69	0	4298474..4299289	+	271	86160169	-	Adeh_3751	-	ABC transporter, ATPase subunit
3740	 82.35	+1	4299411..4300373	+	320	86160170	-	Adeh_3752	-	hypothetical protein
3741	 69.90	-1	4300575..4301162	+	195	86160171	-	Adeh_3753	-	molybdopterin oxidoreductase Fe4S4 protein
3742	 68.56	-1	4301175..4303661	+	828	86160172	-	Adeh_3754	-	formate dehydrogenase alpha subunit
3743	 68.26	-1	4303671..4304546	+	291	86160173	-	Adeh_3755	-	formate dehydrogenase beta subunit
3744	 67.90	-1	4304543..4305193	+	216	86160174	-	Adeh_3756	-	formate dehydrogenase gamma subunit
3745	 79.88	+1	4305231..4306085	+	284	86160175	-	Adeh_3757	-	formate dehydrogenase accessory protein FdhE
3746	 82.42	+1	4306101..4307141	-	346	86160176	-	Adeh_3758	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.