IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3596	 73.91	0	4132349..4132762	-	137	86160026	-	Adeh_3608	-	hypothetical protein
3597	 76.95	0	4133268..4137284	+	1338	86160027	-	Adeh_3609	-	TPR repeat-containing protein
3598	 71.12	0	4137364..4137879	+	171	86160028	-	Adeh_3610	-	hypothetical protein
3599	 76.65	0	4138445..4139125	-	226	86160029	-	Adeh_3611	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
3600	 70.18	0	4139462..4140316	+	284	86160030	-	Adeh_3612	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
3601	 75.34	0	4140356..4140943	+	195	86160031	-	Adeh_3613	-	phosphatidylglycerophosphatase
3602	 76.61	0	4140943..4142169	+	408	86160032	-	Adeh_3614	-	competence/damage-inducible protein cinA
3603	 78.75	0	4142186..4142839	-	217	86160033	-	Adeh_3615	-	hypothetical protein
3604	 71.21	0	4143301..4146426	+	1041	86160034	-	Adeh_3616	-	hypothetical protein
3605	 72.87	0	4146503..4147453	-	316	86160035	-	Adeh_3617	-	recA protein
3606	 70.68	0	4148497..4149069	-	190	86160036	-	Adeh_3618	-	resolvase-like protein
3607	 74.20	0	4149066..4149503	-	145	86160037	-	Adeh_3619	-	hypothetical protein
3608	 69.93	-1	4149505..4150086	+	193	86160038	-	Adeh_3620	-	hypothetical protein
3609	 68.96	-1	4150001..4151134	-	377	86160039	-	Adeh_3621	-	hypothetical protein
3610	 65.07	-2	4151455..4151892	-	145	86160040	-	Adeh_3622	-	hypothetical protein
3611	 78.41	0	4152569..4153249	-	226	86160041	-	Adeh_3623	-	magnesium chelatase, ChlI subunit
3612	 64.31	-2	4153266..4153520	+	84	86160042	-	Adeh_3624	-	hypothetical protein
3613	 60.39	-2	4153590..4154147	-	185	86160043	-	Adeh_3625	-	hypothetical protein
3614	 58.55	-2	4154147..4155058	-	303	86160044	-	Adeh_3626	-	hypothetical protein
3615	 73.56	0	4155373..4155807	+	144	86160045	-	Adeh_3627	-	HNH endonuclease
3616	 62.39	-2	4156064..4157863	-	599	86160046	-	Adeh_3628	-	DNA methylase N-4/N-6
3617	 80.65	+1	4157928..4158299	-	123	86160047	-	Adeh_3629	-	hypothetical protein
3618	 76.48	0	4158538..4159638	-	366	86160048	-	Adeh_3630	-	hypothetical protein
3619	 79.15	+1	4159790..4160470	-	226	86160049	-	Adeh_3631	-	uracil-DNA glycosylase superfamily protein
3620	 72.32	0	4160557..4162167	-	536	86160050	-	Adeh_3632	-	hypothetical protein
3621	 64.80	-2	4162378..4162965	-	195	86160051	-	Adeh_3633	-	MglA protein
3622	 66.88	-1	4162968..4163447	-	159	86160052	-	Adeh_3634	-	mutual gliding protein B
3623	 72.36	0	4163588..4164184	-	198	86160053	-	Adeh_3635	-	recombination protein RecR
3624	 67.31	-1	4164188..4164499	-	103	86160054	-	Adeh_3636	-	hypothetical protein
3625	 78.31	0	4164499..4166319	-	606	86160055	-	Adeh_3637	-	DNA polymerase III, subunits gamma and tau
3626	 77.64	0	4167057..4167539	-	160	86160056	-	Adeh_3638	-	tRNA-adenosine deaminase
3627	 78.68	0	4167794..4170640	+	948	86160057	-	Adeh_3639	-	LigA
3628	 74.07	0	4170690..4172459	-	589	86160058	-	Adeh_3640	-	radical SAM family protein
3629	 76.82	0	4172576..4173511	+	311	86160059	-	Adeh_3641	-	DsbA oxidoreductase
3630	 79.76	+1	4173520..4174794	+	424	86160060	-	Adeh_3642	-	hypothetical protein
3631	 78.26	0	4174791..4175834	+	347	86160061	-	Adeh_3643	-	pseudouridylate synthase
3632	 80.56	+1	4175836..4176756	-	306	86160062	-	Adeh_3644	-	putative GAF sensor protein
3633	 79.66	+1	4176774..4178012	-	412	86160063	-	Adeh_3645	-	OmpA/MotB family outer membrane protein
3634	 70.41	0	4178093..4178359	+	88	86160064	-	Adeh_3646	-	hypothetical protein
3635	 80.82	+1	4178379..4179932	-	517	86160065	-	Adeh_3647	-	parallel beta-helix repeat-containing protein
3636	 80.30	+1	4179932..4180936	-	334	86160066	-	Adeh_3648	-	TPR repeat-containing protein
3637	 79.16	+1	4180933..4182285	-	450	86160067	-	Adeh_3649	-	serine/threonine protein kinase
3638	 77.81	0	4182356..4183360	+	334	86160068	-	Adeh_3650	-	FHA domain-containing protein
3639	 77.08	0	4183447..4184925	+	492	86160069	-	Adeh_3651	-	two component, sigma54 specific, Fis family transcriptional regulator
3640	 78.04	0	4185035..4185421	+	128	86160070	-	Adeh_3652	-	hypothetical protein
3641	 75.14	0	4185438..4186133	+	231	86160071	-	Adeh_3653	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
3642	 78.98	0	4186130..4188127	+	665	86160072	-	Adeh_3654	-	NADH dehydrogenase (quinone)
3643	 78.37	0	4188124..4190088	+	654	86160073	-	Adeh_3655	-	NADH dehydrogenase (quinone)
3644	 73.93	0	4190097..4191005	+	302	86160074	-	Adeh_3656	-	respiratory-chain NADH dehydrogenase, subunit 1
3645	 69.75	-1	4191010..4191657	+	215	86160075	-	Adeh_3657	-	NAD-dependent dehydrogenase subunit
3646	 73.93	0	4191664..4193094	+	476	86160076	-	Adeh_3658	-	NADH dehydrogenase (quinone)
3647	 76.50	0	4193094..4194659	+	521	86160077	-	Adeh_3659	-	NADH-ubiquinone oxidoreductase, chain 49kDa
3648	 76.01	0	4194656..4195426	+	256	86160078	-	Adeh_3660	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
3649	 76.88	0	4195439..4195771	-	110	86160079	-	Adeh_3661	-	phage shock protein C, PspC
3650	 77.00	0	4195812..4196450	-	212	86160080	-	Adeh_3662	-	methyltransferase
3651	 78.32	0	4196553..4197041	+	162	86160081	-	Adeh_3663	-	GCN5-related N-acetyltransferase
3652	 74.25	0	4197223..4198698	-	491	86160082	-	Adeh_3664	-	nicotinate phosphoribosyltransferase related
3653	 72.16	0	4198799..4201636	+	945	86160083	-	Adeh_3665	-	aconitase
3654	 75.82	0	4201757..4202062	+	101	86160084	-	Adeh_3666	-	hypothetical protein
3655	 77.71	0	4202077..4202574	-	165	86160085	-	Adeh_3667	-	hypothetical protein
3656	 77.32	0	4202585..4203832	-	415	86160086	-	Adeh_3668	-	Sodium/hydrogen exchanger
3657	 75.51	0	4204150..4204590	+	146	86160087	-	Adeh_3669	-	hypothetical protein
3658	 65.77	-1	4205041..4206372	+	443	86160088	-	Adeh_3670	-	type I citrate synthase
3659	 78.13	0	4206526..4207746	-	406	86160089	-	Adeh_3671	-	hypothetical protein
3660	 75.57	0	4207930..4208277	-	115	86160090	-	Adeh_3672	-	hypothetical protein
3661	 74.74	0	4208712..4209938	+	408	86160091	-	Adeh_3673	-	ribosomal protein S1
3662	 70.98	0	4210334..4210588	+	84	86160092	-	Adeh_3674	-	hypothetical protein
3663	 77.24	0	4210626..4212290	-	554	86160093	-	Adeh_3675	-	malto-oligosyltrehalose trehalohydrolase
3664	 68.96	-1	4212535..4214325	+	596	86160094	-	Adeh_3676	-	phosphoenolpyruvate carboxykinase
3665	 78.40	0	4214432..4215181	+	249	86160095	-	Adeh_3677	-	hypothetical protein
3666	 69.64	-1	4215217..4215552	+	111	86160096	-	Adeh_3678	-	hypothetical protein
3667	 79.96	+1	4215806..4216753	-	315	86160097	-	Adeh_3679	-	HD-GYP domain-containing protein
3668	 72.76	0	4216832..4217323	-	163	86160098	smpB	Adeh_3680	-	SsrA-binding protein
3669	 76.67	0	4217320..4218189	-	289	86160099	-	Adeh_3681	-	pantothenate synthetase
3670	 73.20	0	4218214..4219131	-	305	86160100	-	Adeh_3682	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3671	 67.59	-1	4219199..4219846	-	215	86160101	-	Adeh_3683	-	deoxynucleoside kinase
3672	 70.04	0	4220080..4220346	+	88	86160102	-	Adeh_3684	-	hypothetical protein
3673	 78.01	0	4220442..4221296	-	284	86160103	-	Adeh_3685	-	dimethyladenosine transferase
3674	 72.78	0	4221352..4221678	-	108	86160104	-	Adeh_3686	-	hypothetical protein
3675	 74.83	0	4221770..4222774	-	334	86160105	-	Adeh_3687	-	O-sialoglycoprotein endopeptidase
3676	 77.84	0	4222992..4225148	-	718	86160106	-	Adeh_3688	-	response regulator receiver domain-containing protein
3677	 79.68	+1	4225286..4227121	-	611	86160107	-	Adeh_3689	-	hypothetical protein
3678	 77.92	0	4227148..4228089	+	313	86160108	-	Adeh_3690	-	hypothetical protein
3679	 74.19	0	4228156..4228926	+	256	86160109	-	Adeh_3691	-	serine/threonine phosphatase
3680	 81.21	+1	4228941..4229978	-	345	86160110	-	Adeh_3692	-	nucleotidyl transferase
3681	 78.31	0	4229999..4231192	+	397	86160111	-	Adeh_3693	-	major facilitator transporter
3682	 77.61	0	4231205..4231807	-	200	86160112	-	Adeh_3694	-	exonuclease
3683	 76.55	0	4231828..4233639	-	603	86160113	-	Adeh_3695	-	cyclic nucleotide-binding protein
3684	 73.99	0	4233693..4235441	-	582	86160114	-	Adeh_3696	-	SSS family solute/sodium (Na+) symporter
3685	 71.32	0	4235445..4235702	-	85	86160115	-	Adeh_3697	-	hypothetical protein
3686	 66.08	-1	4236050..4237741	+	563	86160116	-	Adeh_3698	-	major facilitator superfamily transporter
3687	 75.67	0	4237911..4239320	-	469	86160117	-	Adeh_3699	-	serine/threonine protein kinase
3688	 77.95	0	4239317..4240069	-	250	86160118	-	Adeh_3700	-	metallophosphoesterase
3689	 70.77	0	4240060..4240473	-	137	86160119	-	Adeh_3701	-	hypothetical protein
3690	 63.77	-2	4240522..4240866	+	114	86160120	-	Adeh_3702	-	hypothetical protein
3691	 67.90	-1	4240895..4242520	+	541	86160121	-	Adeh_3703	-	SSS family solute/sodium (Na+) symporter
3692	 75.12	0	4242635..4244314	-	559	86160122	-	Adeh_3704	-	methyl-accepting chemotaxis sensory transducer
3693	 74.40	0	4244567..4245613	-	348	86160123	-	Adeh_3705	-	aminoglycoside phosphotransferase
3694	 68.26	-1	4245727..4247106	+	459	86160124	-	Adeh_3706	-	cystathionine beta-synthase
3695	 72.29	0	4247134..4248306	+	390	86160125	-	Adeh_3707	-	cystathionine gamma-lyase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.