IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3443	 80.30	+1	3973396..3974319	-	307	86159873	-	Adeh_3454	-	hypothetical protein
3444	 75.45	0	3974463..3975851	+	462	86159874	-	Adeh_3455	-	DNA repair protein RadA
3445	 72.01	0	3975886..3976203	+	105	86159875	-	Adeh_3456	-	hypothetical protein
3446	 73.97	0	3976317..3977795	-	492	86159876	-	Adeh_3457	-	glycerol kinase
3447	 80.53	+1	3977799..3978671	-	290	86159877	-	Adeh_3458	-	Alpha/beta hydrolase fold-1
3448	 69.21	-1	3978803..3979117	+	104	86159878	-	Adeh_3459	-	hypothetical protein
3449	 73.41	0	3979448..3979699	+	83	86159879	-	Adeh_3460	-	hypothetical protein
3450	 80.65	+1	3979696..3980031	+	111	86159880	-	Adeh_3461	-	helix-hairpin-helix DNA-binding, class 1
3451	 79.77	+1	3980404..3982410	+	668	86159881	-	Adeh_3462	-	TonB-dependent receptor
3452	 78.33	0	3982407..3983855	+	482	86159882	-	Adeh_3463	-	hypothetical protein
3453	 80.44	+1	3983843..3984757	+	304	86159883	-	Adeh_3464	-	periplasmic binding protein
3454	 79.18	+1	3984754..3985800	+	348	86159884	-	Adeh_3465	-	ABC Fe3+-siderophore transporter, inner membrane subunit
3455	 77.78	0	3985797..3986606	+	269	86159885	-	Adeh_3466	-	ABC cobalamin/Fe3+-siderophores transporter, ATPase subunit
3456	 74.35	0	3987505..3988857	-	450	86159886	-	Adeh_3468	-	hypothetical protein
3457	 70.46	0	3988899..3989768	+	289	86159887	-	Adeh_3469	-	UDP-glucose pyrophosphorylase
3458	 79.95	+1	3989765..3990532	+	255	86159888	-	Adeh_3470	-	hypothetical protein
3459	 73.20	0	3990591..3992060	-	489	86159889	-	Adeh_3471	-	two component, sigma54 specific, Fis family transcriptional regulator
3460	 74.02	0	3992057..3993619	-	520	86159890	-	Adeh_3472	-	response regulator receiver sensor signal transduction histidine kinase
3461	 69.79	-1	3993789..3994844	-	351	86159891	-	Adeh_3473	-	response regulator receiver modulated diguanylate cyclase
3462	 78.32	0	3994891..3995688	+	265	86159892	-	Adeh_3474	-	hypothetical protein
3463	 78.23	0	3995611..3996951	-	446	86159893	-	Adeh_3475	-	hypothetical protein
3464	 75.99	0	3997010..3997567	+	185	86159894	-	Adeh_3476	-	ATP:cob(I)alamin adenosyltransferase
3465	 79.34	+1	3997572..3998273	+	233	86159895	-	Adeh_3477	-	short-chain dehydrogenase/reductase SDR
3466	 67.19	-1	3998393..3998776	+	127	86159896	-	Adeh_3478	-	HesB/YadR/YfhF
3467	 75.80	0	3998862..3999518	+	218	86159897	-	Adeh_3479	-	Beta-lactamase-like
3468	 70.18	0	3999626..4000450	-	274	86159898	-	Adeh_3480	-	enoyl-[acyl-carrier-protein] reductase [NADH]
3469	 71.43	0	4000447..4000782	-	111	86159899	-	Adeh_3481	-	hypothetical protein
3470	 78.28	0	4000845..4001447	+	200	86159900	-	Adeh_3482	-	molybdenum cofactor guanylyltransferase
3471	 74.54	0	4001457..4001837	-	126	86159901	-	Adeh_3483	-	camphor resistance protein CrcB
3472	 78.57	0	4001881..4002258	-	125	86159902	-	Adeh_3484	-	hypothetical protein
3473	 76.30	0	4002349..4002732	+	127	86159903	-	Adeh_3485	-	hypothetical protein
3474	 73.10	0	4002750..4003262	-	170	86159904	-	Adeh_3486	-	hypothetical protein
3475	 78.08	0	4003482..4004243	-	253	86159905	-	Adeh_3487	-	methyltransferase type 11
3476	 76.72	0	4004331..4004678	-	115	86159906	-	Adeh_3488	-	TraR/DksA family transcriptional regulator
3477	 77.81	0	4004793..4005716	-	307	86159907	-	Adeh_3489	-	Pirin-like
3478	 76.80	0	4005799..4008660	+	953	86159908	-	Adeh_3490	-	hypothetical protein
3479	 78.68	0	4008678..4010267	-	529	86159909	-	Adeh_3491	-	hypothetical protein
3480	 74.34	0	4010424..4010879	-	151	86159910	-	Adeh_3492	-	hypothetical protein
3481	 72.12	0	4010893..4012065	-	390	86159911	-	Adeh_3493	-	UBA/THIF-type NAD/FAD binding, MoeZ/MoeB fmaily protein
3482	 73.91	0	4012068..4012343	-	91	86159912	-	Adeh_3494	-	thiamineS
3483	 73.22	0	4012470..4012835	-	121	86159913	-	Adeh_3495	-	hypothetical protein
3484	 76.01	0	4012846..4015263	-	805	86159914	-	Adeh_3496	-	copper-translocating P-type ATPase
3485	 72.01	0	4015260..4015652	-	130	86159915	-	Adeh_3497	-	hypothetical protein
3486	 73.95	0	4015874..4016395	+	173	86159916	-	Adeh_3498	-	hypothetical protein
3487	 77.88	0	4017090..4018373	-	427	86159917	-	Adeh_3499	-	putative sigma factor
3488	 70.27	0	4018402..4018845	-	147	86159918	-	Adeh_3500	-	DGPFAETKE
3489	 73.61	0	4019077..4020084	+	335	86159919	-	Adeh_3501	-	phosphoesterase
3490	 79.22	+1	4020068..4021015	-	315	86159920	-	Adeh_3502	-	esterase/lipase/thioesterase family protein
3491	 75.65	0	4021069..4022292	-	407	86159921	-	Adeh_3503	-	acyltransferase 3
3492	 75.91	0	4022325..4023428	-	367	86159922	-	Adeh_3504	-	phosphatidylinositol alpha-mannosyltransferase
3493	 74.69	0	4023743..4024777	-	344	86159923	-	Adeh_3505	-	aldo/keto reductase
3494	 78.02	0	4024913..4025872	+	319	86159924	-	Adeh_3506	-	LysR family transcriptional regulator
3495	 72.48	0	4025920..4026573	-	217	86159925	-	Adeh_3507	-	hypothetical protein
3496	 76.82	0	4026694..4027146	+	150	86159926	-	Adeh_3508	-	thioredoxin
3497	 78.88	0	4027150..4027665	-	171	86159927	-	Adeh_3509	-	hypothetical protein
3498	 80.54	+1	4027804..4028697	-	297	86159928	-	Adeh_3510	-	putative lipid kinase
3499	 76.45	0	4028715..4028990	-	91	86159929	-	Adeh_3511	-	hypothetical protein
3500	 73.31	0	4029216..4029938	+	240	86159930	-	Adeh_3512	-	hemerythrin HHE cation binding protein
3501	 75.75	0	4030157..4031686	-	509	86159931	-	Adeh_3513	-	methyl-accepting chemotaxis sensory transducer
3502	 71.16	0	4031993..4035196	+	1067	86159932	carB	Adeh_3514	-	carbamoyl phosphate synthase large subunit
3503	 78.14	0	4035270..4036106	+	278	86159933	-	Adeh_3515	-	thiosulfate sulfurtransferase
3504	 71.97	0	4036209..4038284	-	691	86159934	-	Adeh_3516	-	hypothetical protein
3505	 65.42	-2	4038563..4040401	-	612	86159935	-	Adeh_3517	-	hyalin
3506	 76.41	0	4040753..4041142	+	129	86159936	-	Adeh_3518	-	response regulator receiver domain-containing protein
3507	 78.88	0	4041139..4041891	+	250	86159937	-	Adeh_3519	-	hypothetical protein
3508	 79.39	+1	4041869..4042921	+	350	86159938	-	Adeh_3520	-	HEAT repeat-containing protein
3509	 72.29	0	4042918..4044357	+	479	86159939	-	Adeh_3521	-	glycosyl transferase family protein
3510	 69.74	-1	4044396..4045532	+	378	86159940	-	Adeh_3522	-	HflK protein
3511	 69.53	-1	4045529..4046470	+	313	86159941	-	Adeh_3523	-	HflC protein
3512	 70.94	0	4047255..4052501	+	1748	86159942	-	Adeh_3524	-	peptidase S8 and S53
3513	 76.05	0	4052581..4053390	+	269	86159943	-	Adeh_3525	-	hypothetical protein
3514	 76.19	0	4053492..4054289	+	265	86159944	-	Adeh_3526	-	XRE family transcriptional regulator
3515	 75.96	0	4054286..4055296	+	336	86159945	-	Adeh_3527	-	zinc-binding alcohol dehydrogenase
3516	 78.93	0	4055424..4055798	+	124	86159946	-	Adeh_3528	-	hypothetical protein
3517	 72.67	0	4055860..4059126	-	1088	86159947	-	Adeh_3529	-	PAS/PAC sensor hybrid histidine kinase
3518	 78.51	0	4059262..4059717	+	151	86159948	-	Adeh_3530	-	hypothetical protein
3519	 71.07	0	4059753..4060115	-	120	86159949	-	Adeh_3531	-	FMN-binding pyridoxamine 5'-phosphate oxidase-related protein
3520	 75.87	0	4060135..4061340	-	401	86159950	-	Adeh_3532	-	GAF sensor signal transduction histidine kinase
3521	 71.61	0	4061651..4062844	+	397	86159951	-	Adeh_3533	-	hypothetical protein
3522	 76.39	0	4062841..4063992	+	383	86159952	-	Adeh_3534	-	peptidase M48, Ste24p
3523	 66.35	-1	4064012..4064323	-	103	86159953	-	Adeh_3535	-	XRE family transcriptional regulator
3524	 64.54	-2	4064320..4064601	-	93	86159954	-	Adeh_3536	-	hypothetical protein
3525	 70.48	0	4064729..4065043	+	104	86159955	-	Adeh_3537	-	hypothetical protein
3526	 65.28	-2	4065257..4065688	-	143	86159956	-	Adeh_3538	-	hypothetical protein
3527	 63.72	-2	4065681..4066835	-	384	86159957	-	Adeh_3539	-	hypothetical protein
3528	 57.51	-2	4066989..4068167	-	392	86159958	-	Adeh_3540	-	hypothetical protein
3529	 63.70	-2	4068219..4068959	-	246	86159959	-	Adeh_3541	-	hypothetical protein
3530	 64.05	-2	4069008..4069313	-	101	86159960	-	Adeh_3542	-	hypothetical protein
3531	 68.11	-1	4069310..4070698	-	462	86159961	-	Adeh_3543	-	hypothetical protein
3532	 63.07	-2	4070730..4071647	-	305	86159962	-	Adeh_3544	-	restriction endonuclease
3533	 69.44	-1	4072158..4072589	-	143	86159963	-	Adeh_3545	-	hypothetical protein
3534	 64.47	-2	4072711..4073982	+	423	86159964	-	Adeh_3546	-	hypothetical protein
3535	 63.67	-2	4074092..4075024	+	310	86159965	-	Adeh_3547	-	hypothetical protein
3536	 64.75	-2	4075057..4075578	-	173	86159966	-	Adeh_3548	-	hypothetical protein
3537	 62.40	-2	4075580..4075954	+	124	86159967	-	Adeh_3549	-	hypothetical protein
3538	 63.95	-2	4076698..4077801	+	367	86159968	-	Adeh_3550	-	hypothetical protein
3539	 70.76	0	4077985..4078962	+	325	86159969	-	Adeh_3551	-	hypothetical protein
3540	 69.22	-1	4079280..4080062	+	260	86159970	-	Adeh_3552	-	hypothetical protein
3541	 68.93	-1	4080065..4080904	+	279	86159971	-	Adeh_3553	-	hypothetical protein
3542	 65.42	-2	4081002..4081322	-	106	86159972	-	Adeh_3554	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.