IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3350	 73.75	0	3869334..3870053	-	239	86159780	-	Adeh_3361	-	ribonuclease PH
3351	 76.67	0	3870122..3870871	-	249	86159781	-	Adeh_3362	-	N-acetylmuramoyl-L-alanine amidase
3352	 76.19	0	3870893..3871837	-	314	86159782	-	Adeh_3363	-	selenophosphate synthase
3353	 69.08	-1	3872058..3872762	-	234	86159783	-	Adeh_3364	-	TPR repeat-containing protein
3354	 78.92	0	3872823..3873638	-	271	86159784	-	Adeh_3365	-	hypothetical protein
3355	 69.07	-1	3873622..3874410	-	262	86159785	-	Adeh_3366	-	TPR repeat-containing protein
3356	 82.25	+1	3874472..3874978	-	168	86159786	-	Adeh_3367	-	putative RecX protein
3357	 70.87	0	3874990..3876273	-	427	86159787	-	Adeh_3368	-	twitching motility protein
3358	 84.34	+2	3876338..3877384	-	348	86159788	-	Adeh_3369	-	hypothetical protein
3359	 76.80	0	3877502..3878734	+	410	86159789	-	Adeh_3370	-	phospholipase D/transphosphatidylase
3360	 68.96	-1	3878820..3879212	-	130	86159790	-	Adeh_3371	-	SSU ribosomal protein S9P
3361	 67.33	-1	3879225..3879674	-	149	86159791	rplM	Adeh_3372	-	50S ribosomal protein L13
3362	 77.09	0	3879920..3881089	+	389	86159792	-	Adeh_3373	-	BNR repeat-containing glycosyl hydrolase
3363	 73.71	0	3881093..3883108	-	671	86159793	-	Adeh_3374	-	ATP-dependent DNA helicase Rep
3364	 74.24	0	3883289..3883750	+	153	86159794	-	Adeh_3375	-	DoxX
3365	 77.67	0	3884077..3884712	+	211	86159795	-	Adeh_3376	-	hypothetical protein
3366	 73.11	0	3884728..3885642	-	304	86159796	-	Adeh_3377	-	aspartyl/asparaginyl beta-hydroxylase
3367	 76.72	0	3885799..3887001	+	400	86159797	-	Adeh_3378	-	major facilitator transporter
3368	 81.17	+1	3887022..3887924	-	300	86159798	-	Adeh_3379	-	pseudouridine synthase, RluD
3369	 76.57	0	3888007..3888612	+	201	86159799	-	Adeh_3380	-	glutathione S-transferase-like protein
3370	 73.21	0	3888693..3891536	-	947	86159800	-	Adeh_3381	-	peptidase M16-like
3371	 73.06	0	3891767..3892939	+	390	86159801	-	Adeh_3382	-	hypothetical protein
3372	 74.80	0	3893102..3894748	+	548	86159802	-	Adeh_3383	-	periplasmic sensor signal transduction histidine kinase
3373	 81.58	+1	3894763..3894990	-	75	86159803	-	Adeh_3384	-	hypothetical protein
3374	 80.31	+1	3895094..3896530	+	478	86159804	-	Adeh_3385	-	ABC transporter, ATPase subunit
3375	 80.56	+1	3896618..3897574	+	318	86159805	-	Adeh_3386	-	peptidase M23B
3376	 77.99	0	3897585..3898379	-	264	86159806	-	Adeh_3387	-	inositol-1(or 4)-monophosphatase
3377	 72.33	0	3898496..3898795	+	99	86159807	-	Adeh_3388	-	hypothetical protein
3378	 76.69	0	3898811..3900595	+	594	86159808	-	Adeh_3389	-	histone deacetylase superfamily protein
3379	 78.14	0	3900564..3901112	-	182	86159809	-	Adeh_3390	-	hypothetical protein
3380	 71.99	0	3901371..3902705	+	444	86159810	-	Adeh_3391	-	hypothetical protein
3381	 71.40	0	3902705..3903739	+	344	86159811	-	Adeh_3392	-	hypothetical protein
3382	 74.53	0	3903868..3905292	-	474	86159812	-	Adeh_3393	-	UDP-N-acetylmuramate--L-alanine ligase
3383	 81.43	+1	3905356..3906540	-	394	86159813	-	Adeh_3394	-	Beta-lactamase
3384	 80.02	+1	3906537..3907502	-	321	86159814	-	Adeh_3395	-	peptidase S66, LD-carboxypeptidase A
3385	 68.09	-1	3907848..3909743	+	631	86159815	-	Adeh_3396	-	acetyl-coenzyme A synthetase
3386	 72.07	0	3909831..3911069	+	412	86159816	-	Adeh_3397	-	hypothetical protein
3387	 70.31	0	3911066..3911779	+	237	86159817	-	Adeh_3398	-	peptidylprolyl isomerase, FKBP-type
3388	 75.22	0	3911835..3912512	+	225	86159818	-	Adeh_3399	-	glutathione S-transferase-like protein
3389	 75.00	0	3912585..3913040	+	151	86159819	-	Adeh_3400	-	FMN-binding pyridoxamine 5'-phosphate oxidase-related protein
3390	 73.68	0	3913044..3914126	-	360	86159820	-	Adeh_3401	-	methyl-accepting chemotaxis sensory transducer
3391	 76.19	0	3914199..3914975	-	258	86159821	-	Adeh_3402	-	hypothetical protein
3392	 73.96	0	3915265..3916608	+	447	86159822	-	Adeh_3403	-	hypothetical protein
3393	 75.51	0	3916752..3917543	-	263	86159823	-	Adeh_3404	-	hypothetical protein
3394	 72.43	0	3917670..3920255	+	861	86159824	-	Adeh_3405	-	DEAD/DEAH box helicase-like
3395	 78.22	0	3920271..3921023	-	250	86159825	-	Adeh_3406	-	hypothetical protein
3396	 72.96	0	3921131..3921400	+	89	86159826	-	Adeh_3407	-	hypothetical protein
3397	 76.62	0	3921360..3922283	-	307	86159827	-	Adeh_3408	-	hypothetical protein
3398	 77.69	0	3922889..3923260	-	123	86159828	-	Adeh_3409	-	class I peptide chain release factor
3399	 74.44	0	3923257..3923976	-	239	86159829	-	Adeh_3410	-	ABC transporter, ATPase subunit
3400	 74.71	0	3923969..3925186	-	405	86159830	-	Adeh_3411	-	ABC transporter, inner membrane subunit
3401	 81.68	+1	3925176..3926507	-	443	86159831	-	Adeh_3412	-	secretion protein HlyD
3402	 73.98	0	3926600..3928171	+	523	86159832	-	Adeh_3413	-	transglutaminase-like
3403	 77.78	0	3928168..3929085	+	305	86159833	-	Adeh_3414	-	hypothetical protein
3404	 81.95	+1	3929082..3930998	+	638	86159834	-	Adeh_3415	-	TPR repeat-containing protein
3405	 78.74	0	3931028..3932311	+	427	86159835	-	Adeh_3416	-	hypothetical protein
3406	 75.71	0	3932321..3933547	+	408	86159836	-	Adeh_3417	-	hypothetical protein
3407	 81.70	+1	3933639..3934403	+	254	86159837	-	Adeh_3418	-	methyltransferase type 11
3408	 76.09	0	3934472..3935638	-	388	86159838	-	Adeh_3419	-	hypothetical protein
3409	 75.05	0	3935771..3936748	+	325	86159839	-	Adeh_3420	-	fumarylacetoacetate (FAA) hydrolase
3410	 75.26	0	3936745..3937407	+	220	86159840	-	Adeh_3421	-	maleylacetoacetate isomerase
3411	 71.91	0	3937404..3938585	+	393	86159841	-	Adeh_3422	-	4-hydroxyphenylpyruvate dioxygenase
3412	 74.09	0	3938590..3939747	+	385	86159842	-	Adeh_3423	-	homogentisate 1,2-dioxygenase
3413	 77.20	0	3939797..3940261	+	154	86159843	-	Adeh_3424	-	hypothetical protein
3414	 77.50	0	3940366..3940974	-	202	86159844	-	Adeh_3425	-	mucin-associated surface protein (MASP), putative
3415	 70.02	0	3941108..3941644	-	178	86159845	-	Adeh_3426	-	hypothetical protein
3416	 77.19	0	3941792..3942979	+	395	86159846	-	Adeh_3427	-	alanine racemase
3417	 75.42	0	3942984..3944045	-	353	86159847	-	Adeh_3428	-	branched-chain amino acid aminotransferase
3418	 78.65	0	3944142..3944600	+	152	86159848	-	Adeh_3429	-	MarR family transcriptional regulator
3419	 79.17	+1	3944716..3945267	-	183	86159849	-	Adeh_3430	-	GCN5-related N-acetyltransferase
3420	 69.51	-1	3945336..3945722	+	128	86159850	-	Adeh_3431	-	hypothetical protein
3421	 77.40	0	3946021..3947157	+	378	86159851	-	Adeh_3432	-	phenylalanyl-tRNA synthetase, alpha subunit
3422	 78.63	0	3947253..3948740	+	495	86159852	-	Adeh_3433	-	amidase
3423	 76.99	0	3948730..3950541	-	603	86159853	-	Adeh_3434	-	TrkA-C
3424	 78.85	0	3950557..3950991	-	144	86159854	-	Adeh_3435	-	hypothetical protein
3425	 83.13	+1	3951059..3951781	-	240	86159855	-	Adeh_3436	-	hypothetical protein
3426	 79.12	+1	3951842..3952387	+	181	86159856	-	Adeh_3437	-	hypothetical protein
3427	 78.97	0	3952384..3953358	-	324	86159857	-	Adeh_3438	-	histone deacetylase superfamily protein
3428	 77.68	0	3953555..3954226	+	223	86159858	-	Adeh_3439	-	hypothetical protein
3429	 79.32	+1	3954234..3954707	-	157	86159859	-	Adeh_3440	-	hypothetical protein
3430	 80.14	+1	3954834..3956102	+	422	86159860	-	Adeh_3441	-	hypothetical protein
3431	 65.35	-2	3956308..3957450	+	380	86159861	-	Adeh_3442	-	DNA-cytosine methyltransferase
3432	 63.76	-2	3957447..3957893	+	148	86159862	-	Adeh_3443	-	T/G mismatch-specific endonuclease
3433	 64.12	-2	3957913..3958698	+	261	86159863	-	Adeh_3444	-	hypothetical protein
3434	 69.47	-1	3958800..3962432	+	1210	86159864	-	Adeh_3445	-	DNA polymerase III, alpha subunit
3435	 74.74	0	3962718..3963485	+	255	86159865	-	Adeh_3446	-	hypothetical protein
3436	 73.48	0	3964207..3964734	+	175	86159866	-	Adeh_3447	-	LuxR family transcriptional regulator
3437	 72.28	0	3964874..3966085	+	403	86159867	-	Adeh_3448	-	L-threonine ammonia-lyase
3438	 75.48	0	3966328..3967008	+	226	86159868	-	Adeh_3449	-	sigma-24 (FecI-like)
3439	 78.98	0	3967021..3970251	+	1076	86159869	-	Adeh_3450	-	WD-40 repeat-containing serine/threonin protein kinase
3440	 78.24	0	3970248..3970748	+	166	86159870	-	Adeh_3451	-	hypothetical protein
3441	 78.73	0	3970755..3971948	-	397	86159871	-	Adeh_3452	-	8-amino-7-oxononanoate synthase
3442	 73.76	0	3971952..3973037	-	361	86159872	-	Adeh_3453	-	biotin synthase
3443	 80.30	+1	3973396..3974319	-	307	86159873	-	Adeh_3454	-	hypothetical protein
3444	 75.45	0	3974463..3975851	+	462	86159874	-	Adeh_3455	-	DNA repair protein RadA
3445	 72.01	0	3975886..3976203	+	105	86159875	-	Adeh_3456	-	hypothetical protein
3446	 73.97	0	3976317..3977795	-	492	86159876	-	Adeh_3457	-	glycerol kinase
3447	 80.53	+1	3977799..3978671	-	290	86159877	-	Adeh_3458	-	Alpha/beta hydrolase fold-1
3448	 69.21	-1	3978803..3979117	+	104	86159878	-	Adeh_3459	-	hypothetical protein
3449	 73.41	0	3979448..3979699	+	83	86159879	-	Adeh_3460	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.