IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3295	 73.65	0	3787576..3788019	-	147	86159725	-	Adeh_3306	-	hypothetical protein
3296	 69.81	-1	3788093..3789745	+	550	86159726	-	Adeh_3307	-	signal recognition particle subunit FFH/SRP54 (srp54)
3297	 80.57	+1	3789863..3790768	+	301	86159727	-	Adeh_3308	-	hypothetical protein
3298	 71.25	0	3790966..3792078	-	370	86159728	-	Adeh_3309	-	hypothetical protein
3299	 79.04	0	3792273..3794090	-	605	86159729	-	Adeh_3310	-	zinc finger/thioredoxin putative
3300	 78.60	0	3794148..3806372	-	4074	86159730	-	Adeh_3311	-	TPR repeat-containing protein
3301	 78.15	0	3806827..3807357	-	176	86159731	-	Adeh_3312	-	hypothetical protein
3302	 82.44	+1	3807345..3809030	-	561	86159732	-	Adeh_3313	-	thymidylate kinase
3303	 80.06	+1	3809035..3809706	-	223	86159733	-	Adeh_3314	-	hypothetical protein
3304	 78.94	0	3809708..3811060	-	450	86159734	-	Adeh_3315	-	hypothetical protein
3305	 75.86	0	3811160..3812497	+	445	86159735	-	Adeh_3316	-	metallophosphoesterase
3306	 73.89	0	3812611..3814284	+	557	86159736	-	Adeh_3317	-	spore coat assembly protein-like
3307	 71.04	0	3814342..3814959	-	205	86159737	-	Adeh_3318	-	hypothetical protein
3308	 73.29	0	3814973..3816994	-	673	86159738	-	Adeh_3319	-	FHA domain-containing protein
3309	 64.07	-2	3817025..3817294	-	89	86159739	-	Adeh_3320	-	hypothetical protein
3310	 78.12	0	3817384..3818745	-	453	86159740	-	Adeh_3321	-	TPR repeat-containing protein
3311	 71.64	0	3818742..3822323	-	1193	86159741	-	Adeh_3322	-	TPR repeat-containing protein
3312	 72.17	0	3822348..3824090	-	580	86159742	-	Adeh_3323	-	hypothetical protein
3313	 70.87	0	3824097..3824882	-	261	86159743	-	Adeh_3324	-	hypothetical protein
3314	 69.29	-1	3824879..3825754	-	291	86159744	-	Adeh_3325	-	hypothetical protein
3315	 69.29	-1	3825899..3826318	+	139	86159745	-	Adeh_3326	-	hypothetical protein
3316	 74.73	0	3826315..3826773	+	152	86159746	-	Adeh_3327	-	hypothetical protein
3317	 68.85	-1	3826842..3827207	-	121	86159747	-	Adeh_3328	-	hypothetical protein
3318	 83.66	+2	3827273..3829537	+	754	86159748	-	Adeh_3329	-	putative Vgr-related protein
3319	 73.94	0	3829729..3830580	+	283	86159749	-	Adeh_3330	-	hypothetical protein
3320	 76.02	0	3830696..3831700	-	334	86159750	-	Adeh_3331	-	homoserine kinase
3321	 80.11	+1	3831721..3832248	-	175	86159751	-	Adeh_3332	-	hypothetical protein
3322	 70.55	0	3832377..3833201	+	274	86159752	-	Adeh_3333	-	TPR repeat-containing protein
3323	 77.18	0	3833295..3834959	+	554	86159753	-	Adeh_3334	-	sigma-54 dependent trancsriptional regulator
3324	 75.23	0	3834969..3835517	-	182	86159754	-	Adeh_3335	-	general secretory system II, protein E-like
3325	 72.36	0	3835603..3836445	-	280	86159755	-	Adeh_3336	-	hypothetical protein
3326	 71.19	0	3836442..3837170	-	242	86159756	-	Adeh_3337	-	OmpA/MotB family outer membrane protein
3327	 73.49	0	3837293..3838654	+	453	86159757	-	Adeh_3338	-	two component, sigma54 specific, Fis family transcriptional regulator
3328	 75.71	0	3838937..3841624	+	895	86159758	-	Adeh_3339	-	penicillin-binding protein 1A
3329	 82.49	+1	3841875..3842468	-	197	86159759	-	Adeh_3340	-	hypothetical protein
3330	 83.09	+1	3843024..3844478	+	484	86159760	-	Adeh_3341	-	extracellular solute-binding protein
3331	 80.30	+1	3844475..3846220	+	581	86159761	-	Adeh_3342	-	periplasmic sensor signal transduction histidine kinase
3332	 81.24	+1	3846270..3847895	-	541	86159762	-	Adeh_3343	-	hypothetical protein
3333	 74.02	0	3848190..3850310	+	706	86159763	-	Adeh_3344	-	dipeptidyl-peptidase 7
3334	 71.85	0	3850423..3851793	+	456	86159764	-	Adeh_3345	-	xanthine/uracil/vitamin C transporter
3335	 70.35	0	3851844..3852848	-	334	86159765	-	Adeh_3346	-	quinolinate synthetase
3336	 72.22	0	3852845..3853240	-	131	86159766	-	Adeh_3347	-	hypothetical protein
3337	 79.89	+1	3853278..3854018	+	246	86159767	-	Adeh_3348	-	hypothetical protein
3338	 72.09	0	3854432..3855538	+	368	86159768	-	Adeh_3349	-	HNH endonuclease
3339	 66.38	-1	3855535..3857973	-	812	86159769	-	Adeh_3350	-	Lon-A peptidase
3340	 75.48	0	3858151..3859863	+	570	86159770	-	Adeh_3351	-	aminotransferase, putative
3341	 66.02	-1	3860113..3861351	-	412	86159771	clpX	Adeh_3352	-	ATP-dependent protease ATP-binding subunit
3342	 65.03	-2	3861436..3862047	-	203	86159772	-	Adeh_3353	-	ATP-dependent Clp protease proteolytic subunit ClpP
3343	 70.31	0	3862067..3863356	-	429	86159773	-	Adeh_3354	-	trigger factor
3344	 73.28	0	3863583..3863990	+	135	86159774	-	Adeh_3355	-	hypothetical protein
3345	 75.81	0	3864007..3865680	-	557	86159775	-	Adeh_3356	-	glycosyl transferase family protein
3346	 66.82	-1	3865677..3866318	-	213	86159776	-	Adeh_3357	-	Lipid A biosynthesis-like
3347	 69.05	-1	3866315..3867028	-	237	86159777	-	Adeh_3358	-	glycosyl transferase family protein
3348	 74.06	0	3867056..3867799	-	247	86159778	-	Adeh_3359	-	hypothetical protein
3349	 77.12	0	3868621..3869328	-	235	86159779	-	Adeh_3360	-	Ham1-like protein
3350	 73.75	0	3869334..3870053	-	239	86159780	-	Adeh_3361	-	ribonuclease PH
3351	 76.67	0	3870122..3870871	-	249	86159781	-	Adeh_3362	-	N-acetylmuramoyl-L-alanine amidase
3352	 76.19	0	3870893..3871837	-	314	86159782	-	Adeh_3363	-	selenophosphate synthase
3353	 69.08	-1	3872058..3872762	-	234	86159783	-	Adeh_3364	-	TPR repeat-containing protein
3354	 78.92	0	3872823..3873638	-	271	86159784	-	Adeh_3365	-	hypothetical protein
3355	 69.07	-1	3873622..3874410	-	262	86159785	-	Adeh_3366	-	TPR repeat-containing protein
3356	 82.25	+1	3874472..3874978	-	168	86159786	-	Adeh_3367	-	putative RecX protein
3357	 70.87	0	3874990..3876273	-	427	86159787	-	Adeh_3368	-	twitching motility protein
3358	 84.34	+2	3876338..3877384	-	348	86159788	-	Adeh_3369	-	hypothetical protein
3359	 76.80	0	3877502..3878734	+	410	86159789	-	Adeh_3370	-	phospholipase D/transphosphatidylase
3360	 68.96	-1	3878820..3879212	-	130	86159790	-	Adeh_3371	-	SSU ribosomal protein S9P
3361	 67.33	-1	3879225..3879674	-	149	86159791	rplM	Adeh_3372	-	50S ribosomal protein L13
3362	 77.09	0	3879920..3881089	+	389	86159792	-	Adeh_3373	-	BNR repeat-containing glycosyl hydrolase
3363	 73.71	0	3881093..3883108	-	671	86159793	-	Adeh_3374	-	ATP-dependent DNA helicase Rep
3364	 74.24	0	3883289..3883750	+	153	86159794	-	Adeh_3375	-	DoxX
3365	 77.67	0	3884077..3884712	+	211	86159795	-	Adeh_3376	-	hypothetical protein
3366	 73.11	0	3884728..3885642	-	304	86159796	-	Adeh_3377	-	aspartyl/asparaginyl beta-hydroxylase
3367	 76.72	0	3885799..3887001	+	400	86159797	-	Adeh_3378	-	major facilitator transporter
3368	 81.17	+1	3887022..3887924	-	300	86159798	-	Adeh_3379	-	pseudouridine synthase, RluD
3369	 76.57	0	3888007..3888612	+	201	86159799	-	Adeh_3380	-	glutathione S-transferase-like protein
3370	 73.21	0	3888693..3891536	-	947	86159800	-	Adeh_3381	-	peptidase M16-like
3371	 73.06	0	3891767..3892939	+	390	86159801	-	Adeh_3382	-	hypothetical protein
3372	 74.80	0	3893102..3894748	+	548	86159802	-	Adeh_3383	-	periplasmic sensor signal transduction histidine kinase
3373	 81.58	+1	3894763..3894990	-	75	86159803	-	Adeh_3384	-	hypothetical protein
3374	 80.31	+1	3895094..3896530	+	478	86159804	-	Adeh_3385	-	ABC transporter, ATPase subunit
3375	 80.56	+1	3896618..3897574	+	318	86159805	-	Adeh_3386	-	peptidase M23B
3376	 77.99	0	3897585..3898379	-	264	86159806	-	Adeh_3387	-	inositol-1(or 4)-monophosphatase
3377	 72.33	0	3898496..3898795	+	99	86159807	-	Adeh_3388	-	hypothetical protein
3378	 76.69	0	3898811..3900595	+	594	86159808	-	Adeh_3389	-	histone deacetylase superfamily protein
3379	 78.14	0	3900564..3901112	-	182	86159809	-	Adeh_3390	-	hypothetical protein
3380	 71.99	0	3901371..3902705	+	444	86159810	-	Adeh_3391	-	hypothetical protein
3381	 71.40	0	3902705..3903739	+	344	86159811	-	Adeh_3392	-	hypothetical protein
3382	 74.53	0	3903868..3905292	-	474	86159812	-	Adeh_3393	-	UDP-N-acetylmuramate--L-alanine ligase
3383	 81.43	+1	3905356..3906540	-	394	86159813	-	Adeh_3394	-	Beta-lactamase
3384	 80.02	+1	3906537..3907502	-	321	86159814	-	Adeh_3395	-	peptidase S66, LD-carboxypeptidase A
3385	 68.09	-1	3907848..3909743	+	631	86159815	-	Adeh_3396	-	acetyl-coenzyme A synthetase
3386	 72.07	0	3909831..3911069	+	412	86159816	-	Adeh_3397	-	hypothetical protein
3387	 70.31	0	3911066..3911779	+	237	86159817	-	Adeh_3398	-	peptidylprolyl isomerase, FKBP-type
3388	 75.22	0	3911835..3912512	+	225	86159818	-	Adeh_3399	-	glutathione S-transferase-like protein
3389	 75.00	0	3912585..3913040	+	151	86159819	-	Adeh_3400	-	FMN-binding pyridoxamine 5'-phosphate oxidase-related protein
3390	 73.68	0	3913044..3914126	-	360	86159820	-	Adeh_3401	-	methyl-accepting chemotaxis sensory transducer
3391	 76.19	0	3914199..3914975	-	258	86159821	-	Adeh_3402	-	hypothetical protein
3392	 73.96	0	3915265..3916608	+	447	86159822	-	Adeh_3403	-	hypothetical protein
3393	 75.51	0	3916752..3917543	-	263	86159823	-	Adeh_3404	-	hypothetical protein
3394	 72.43	0	3917670..3920255	+	861	86159824	-	Adeh_3405	-	DEAD/DEAH box helicase-like
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.