IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3233	 62.69	-2	3709660..3709986	-	108	86159663	-	Adeh_3243	-	hypothetical protein
3234	 65.66	-1	3710028..3711023	-	331	86159664	-	Adeh_3244	-	hypothetical protein
3235	 68.60	-1	3711123..3712103	-	326	86159665	-	Adeh_3245	-	hypothetical protein
3236	 67.50	-1	3712425..3718205	-	1926	86159666	-	Adeh_3246	-	hypothetical protein
3237	 70.08	0	3718464..3719108	-	214	86159667	-	Adeh_3247	-	hypothetical protein
3238	 72.86	0	3719122..3721380	-	752	86159668	-	Adeh_3248	-	serine/threonine protein kinase
3239	 72.83	0	3721377..3722285	-	302	86159669	-	Adeh_3249	-	hypothetical protein
3240	 70.43	0	3722272..3722988	-	238	86159670	-	Adeh_3250	-	hypothetical protein
3241	 73.64	0	3723037..3724356	-	439	86159671	-	Adeh_3251	-	hypothetical protein
3242	 73.16	0	3724353..3725276	-	307	86159672	-	Adeh_3252	-	hypothetical protein
3243	 71.31	0	3725286..3727871	-	861	86159673	-	Adeh_3253	-	type IV secretory pathway VirB4 components-like
3244	 74.40	0	3727868..3728203	-	111	86159674	-	Adeh_3254	-	hypothetical protein
3245	 67.60	-1	3728234..3728554	-	106	86159675	-	Adeh_3255	-	hypothetical protein
3246	 71.79	0	3728526..3728876	-	116	86159676	-	Adeh_3256	-	hypothetical protein
3247	 70.99	0	3728962..3729285	+	107	86159677	-	Adeh_3257	-	hypothetical protein
3248	 67.04	-1	3729282..3730352	+	356	86159678	-	Adeh_3258	-	hypothetical protein
3249	 66.37	-1	3730400..3730735	-	111	86159679	-	Adeh_3259	-	hypothetical protein
3250	 61.93	-2	3731059..3732345	-	428	86159680	-	Adeh_3260	-	hypothetical protein
3251	 59.48	-2	3732378..3733532	-	384	86159681	-	Adeh_3261	-	hypothetical protein
3252	 73.69	0	3733634..3734245	-	203	86159682	-	Adeh_3262	-	DNA repair protein RadC
3253	 73.71	0	3734257..3734739	-	160	86159683	-	Adeh_3263	-	hypothetical protein
3254	 77.70	0	3734757..3735191	+	144	86159684	-	Adeh_3264	-	hypothetical protein
3255	 75.48	0	3735749..3737041	-	430	86159685	-	Adeh_3265	-	VWA containing CoxE-like
3256	 71.28	0	3737111..3738259	-	382	86159686	-	Adeh_3266	-	ATPase AAA-5
3257	 72.72	0	3738275..3739150	-	291	86159687	-	Adeh_3267	-	hypothetical protein
3258	 72.97	0	3739360..3741057	-	565	86159688	-	Adeh_3268	-	ParB family protein
3259	 71.60	0	3741127..3741450	-	107	86159689	-	Adeh_3269	-	hypothetical protein
3260	 63.53	-2	3742098..3742352	-	84	86159690	-	Adeh_3270	-	hypothetical protein
3261	 63.71	-2	3743073..3744896	-	607	86159691	-	Adeh_3271	-	UvrD/REP helicase
3262	 61.84	-2	3744893..3747169	-	758	86159692	-	Adeh_3272	-	OLD family-like ATP-dependent endonuclease
3263	 68.47	-1	3747216..3748325	-	369	86159693	-	Adeh_3273	-	ParB family protein
3264	 72.56	0	3748318..3749097	-	259	86159694	-	Adeh_3274	-	cobyrinic acid a,c-diamide synthase
3265	 74.80	0	3749244..3749747	+	167	86159695	-	Adeh_3275	-	hypothetical protein
3266	 71.02	0	3749744..3750202	+	152	86159696	-	Adeh_3276	-	lytic transglycosylase, catalytic
3267	 63.68	-2	3750377..3751513	+	378	86159697	-	Adeh_3277	-	hypothetical protein
3268	 60.28	-2	3751651..3752010	+	119	86159698	-	Adeh_3278	-	hypothetical protein
3269	 66.67	-1	3752061..3752612	-	183	86159699	-	Adeh_3279	-	hypothetical protein
3270	 68.19	-1	3752594..3753844	-	416	86159700	-	Adeh_3280	-	hypothetical protein
3271	 68.39	-1	3754420..3754998	+	192	86159701	-	Adeh_3281	-	hypothetical protein
3272	 71.22	0	3754995..3755894	+	299	86159702	-	Adeh_3282	-	hypothetical protein
3273	 64.24	-2	3756052..3756627	+	191	86159703	-	Adeh_3283	-	hypothetical protein
3274	 67.68	-1	3756674..3757264	+	196	86159704	-	Adeh_3284	-	hypothetical protein
3275	 66.78	-1	3757302..3758201	+	299	86159705	-	Adeh_3285	-	hypothetical protein
3276	 72.58	0	3760217..3761536	-	439	86159706	-	Adeh_3287	-	aminopeptidase P
3277	 74.69	0	3761637..3763394	-	585	86159707	-	Adeh_3288	-	peptidase M61
3278	 79.68	+1	3763471..3766821	+	1116	86159708	-	Adeh_3289	-	SARP family transcriptional regulator
3279	 76.83	0	3767014..3767859	+	281	86159709	-	Adeh_3290	-	hypothetical protein
3280	 72.37	0	3767886..3768113	+	75	86159710	-	Adeh_3291	-	hypothetical protein
3281	 72.65	0	3768110..3768343	+	77	86159711	-	Adeh_3292	-	hypothetical protein
3282	 72.69	0	3768340..3770565	+	741	86159712	-	Adeh_3293	-	ferrous iron transport protein B
3283	 76.74	0	3770806..3771828	+	340	86159713	-	Adeh_3294	-	L-erythro-3,5-diaminohexanoate dehydrogenase
3284	 74.00	0	3771825..3772724	-	299	86159714	-	Adeh_3295	-	hypothetical protein
3285	 74.57	0	3773009..3774349	-	446	86159715	-	Adeh_3296	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3286	 71.54	0	3774474..3774842	-	122	86159716	-	Adeh_3297	-	glutathione-dependent formaldehyde-activating, GFA
3287	 71.36	0	3774970..3775395	-	141	86159717	-	Adeh_3298	-	signal-transduction protein
3288	 72.05	0	3775781..3778177	+	798	86159718	-	Adeh_3299	-	multicopper oxidase, type 2
3289	 74.27	0	3779011..3780405	+	464	86159719	-	Adeh_3300	-	cystathionine beta-synthase
3290	 83.08	+1	3780430..3781215	+	261	86159720	-	Adeh_3301	-	Sel1
3291	 77.74	0	3781151..3782749	-	532	86159721	-	Adeh_3302	-	FAD dependent oxidoreductase
3292	 74.62	0	3783438..3784871	+	477	86159722	-	Adeh_3303	-	hypothetical protein
3293	 72.16	0	3785007..3785588	+	193	86159723	-	Adeh_3304	-	hypothetical protein
3294	 80.82	+1	3785592..3787583	+	663	86159724	-	Adeh_3305	-	peptidase M48, Ste24p
3295	 73.65	0	3787576..3788019	-	147	86159725	-	Adeh_3306	-	hypothetical protein
3296	 69.81	-1	3788093..3789745	+	550	86159726	-	Adeh_3307	-	signal recognition particle subunit FFH/SRP54 (srp54)
3297	 80.57	+1	3789863..3790768	+	301	86159727	-	Adeh_3308	-	hypothetical protein
3298	 71.25	0	3790966..3792078	-	370	86159728	-	Adeh_3309	-	hypothetical protein
3299	 79.04	0	3792273..3794090	-	605	86159729	-	Adeh_3310	-	zinc finger/thioredoxin putative
3300	 78.60	0	3794148..3806372	-	4074	86159730	-	Adeh_3311	-	TPR repeat-containing protein
3301	 78.15	0	3806827..3807357	-	176	86159731	-	Adeh_3312	-	hypothetical protein
3302	 82.44	+1	3807345..3809030	-	561	86159732	-	Adeh_3313	-	thymidylate kinase
3303	 80.06	+1	3809035..3809706	-	223	86159733	-	Adeh_3314	-	hypothetical protein
3304	 78.94	0	3809708..3811060	-	450	86159734	-	Adeh_3315	-	hypothetical protein
3305	 75.86	0	3811160..3812497	+	445	86159735	-	Adeh_3316	-	metallophosphoesterase
3306	 73.89	0	3812611..3814284	+	557	86159736	-	Adeh_3317	-	spore coat assembly protein-like
3307	 71.04	0	3814342..3814959	-	205	86159737	-	Adeh_3318	-	hypothetical protein
3308	 73.29	0	3814973..3816994	-	673	86159738	-	Adeh_3319	-	FHA domain-containing protein
3309	 64.07	-2	3817025..3817294	-	89	86159739	-	Adeh_3320	-	hypothetical protein
3310	 78.12	0	3817384..3818745	-	453	86159740	-	Adeh_3321	-	TPR repeat-containing protein
3311	 71.64	0	3818742..3822323	-	1193	86159741	-	Adeh_3322	-	TPR repeat-containing protein
3312	 72.17	0	3822348..3824090	-	580	86159742	-	Adeh_3323	-	hypothetical protein
3313	 70.87	0	3824097..3824882	-	261	86159743	-	Adeh_3324	-	hypothetical protein
3314	 69.29	-1	3824879..3825754	-	291	86159744	-	Adeh_3325	-	hypothetical protein
3315	 69.29	-1	3825899..3826318	+	139	86159745	-	Adeh_3326	-	hypothetical protein
3316	 74.73	0	3826315..3826773	+	152	86159746	-	Adeh_3327	-	hypothetical protein
3317	 68.85	-1	3826842..3827207	-	121	86159747	-	Adeh_3328	-	hypothetical protein
3318	 83.66	+2	3827273..3829537	+	754	86159748	-	Adeh_3329	-	putative Vgr-related protein
3319	 73.94	0	3829729..3830580	+	283	86159749	-	Adeh_3330	-	hypothetical protein
3320	 76.02	0	3830696..3831700	-	334	86159750	-	Adeh_3331	-	homoserine kinase
3321	 80.11	+1	3831721..3832248	-	175	86159751	-	Adeh_3332	-	hypothetical protein
3322	 70.55	0	3832377..3833201	+	274	86159752	-	Adeh_3333	-	TPR repeat-containing protein
3323	 77.18	0	3833295..3834959	+	554	86159753	-	Adeh_3334	-	sigma-54 dependent trancsriptional regulator
3324	 75.23	0	3834969..3835517	-	182	86159754	-	Adeh_3335	-	general secretory system II, protein E-like
3325	 72.36	0	3835603..3836445	-	280	86159755	-	Adeh_3336	-	hypothetical protein
3326	 71.19	0	3836442..3837170	-	242	86159756	-	Adeh_3337	-	OmpA/MotB family outer membrane protein
3327	 73.49	0	3837293..3838654	+	453	86159757	-	Adeh_3338	-	two component, sigma54 specific, Fis family transcriptional regulator
3328	 75.71	0	3838937..3841624	+	895	86159758	-	Adeh_3339	-	penicillin-binding protein 1A
3329	 82.49	+1	3841875..3842468	-	197	86159759	-	Adeh_3340	-	hypothetical protein
3330	 83.09	+1	3843024..3844478	+	484	86159760	-	Adeh_3341	-	extracellular solute-binding protein
3331	 80.30	+1	3844475..3846220	+	581	86159761	-	Adeh_3342	-	periplasmic sensor signal transduction histidine kinase
3332	 81.24	+1	3846270..3847895	-	541	86159762	-	Adeh_3343	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.