IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2901	 73.33	0	3286073..3286387	-	104	86159331	-	Adeh_2909	-	hypothetical protein
2902	 70.72	0	3287212..3287532	+	106	86159332	-	Adeh_2910	-	hypothetical protein
2903	 75.79	0	3287577..3288431	-	284	86159333	-	Adeh_2911	-	ErfK/YbiS/YcfS/YnhG
2904	 78.98	0	3288578..3289105	+	175	86159334	-	Adeh_2912	-	hypothetical protein
2905	 75.50	0	3289234..3289686	+	150	86159335	-	Adeh_2913	-	hypothetical protein
2906	 76.83	0	3289712..3290449	+	245	86159336	-	Adeh_2914	-	two component transcriptional regulator
2907	 78.76	0	3290446..3291735	+	429	86159337	-	Adeh_2915	-	periplasmic sensor signal transduction histidine kinase
2908	 71.93	0	3291892..3292176	+	94	86159338	-	Adeh_2916	-	hypothetical protein
2909	 78.17	0	3292247..3293593	+	448	86159339	-	Adeh_2917	-	hypothetical protein
2910	 78.24	0	3293600..3294316	-	238	86159340	-	Adeh_2918	-	hypothetical protein
2911	 78.32	0	3294527..3294955	+	142	86159341	-	Adeh_2919	-	MarR family transcriptional regulator
2912	 77.13	0	3294952..3296184	+	410	86159342	-	Adeh_2920	-	major facilitator transporter
2913	 81.46	+1	3296477..3296902	+	141	86159343	-	Adeh_2921	-	hypothetical protein
2914	 78.81	0	3296984..3298465	+	493	86159344	-	Adeh_2922	-	amidase
2915	 78.40	0	3298450..3299097	+	215	86159345	-	Adeh_2923	-	TetR family transcriptional regulator
2916	 76.01	0	3299094..3299639	-	181	86159346	-	Adeh_2924	-	hypothetical protein
2917	 70.70	0	3299749..3301014	-	421	86159347	-	Adeh_2925	-	N-glycosyltransferase PgaC
2918	 71.82	0	3301025..3303004	-	659	86159348	-	Adeh_2926	-	polysaccharide deacetylase
2919	 75.23	0	3303413..3305362	+	649	86159349	-	Adeh_2927	-	hypothetical protein
2920	 75.00	0	3305527..3306870	+	447	86159350	-	Adeh_2928	-	peptidase M48, Ste24p
2921	 81.71	+1	3306876..3308690	-	604	86159351	-	Adeh_2929	-	UBA/THIF-type NAD/FAD binding protein
2922	 73.90	0	3308928..3309425	-	165	86159352	-	Adeh_2930	-	hypothetical protein
2923	 70.26	0	3309380..3310270	-	296	86159353	-	Adeh_2931	-	hypothetical protein
2924	 69.14	-1	3310355..3311164	-	269	86159354	-	Adeh_2932	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2925	 67.08	-1	3311164..3313080	-	638	86159355	sdhA	Adeh_2933	-	succinate dehydrogenase flavoprotein subunit
2926	 66.67	-1	3313091..3313756	-	221	86159356	-	Adeh_2934	-	succinate dehydrogenase subunit C
2927	 80.67	+1	3313973..3315814	-	613	86159357	-	Adeh_2935	-	peptidase S41
2928	 70.83	0	3316058..3316369	+	103	86159358	-	Adeh_2936	-	hypothetical protein
2929	 75.06	0	3316434..3318626	-	730	86159359	-	Adeh_2937	-	protease-associated PA
2930	 74.67	0	3318859..3319533	-	224	86159360	-	Adeh_2938	-	hypothetical protein
2931	 74.76	0	3319710..3320747	+	345	86159361	-	Adeh_2939	-	Alpha/beta hydrolase
2932	 75.51	0	3320903..3322327	+	474	86159362	-	Adeh_2940	-	hypothetical protein
2933	 78.65	0	3322475..3323392	+	305	86159363	-	Adeh_2941	-	MCP methyltransferase, CheR-type
2934	 77.43	0	3323385..3325493	+	702	86159364	-	Adeh_2942	-	periplasmic sensor hybrid histidine kinase
2935	 76.67	0	3325516..3327054	-	512	86159365	-	Adeh_2943	-	histidine kinase
2936	 73.17	0	3327051..3328541	-	496	86159366	-	Adeh_2944	-	putative circadian clock protein, KaiC
2937	 80.15	+1	3328739..3329287	-	182	86159367	-	Adeh_2945	-	carbon monoxide dehydrogenase subunit G
2938	 82.72	+1	3329410..3330462	-	350	86159368	-	Adeh_2946	-	hypothetical protein
2939	 78.62	0	3330815..3331132	+	105	86159369	-	Adeh_2947	-	hypothetical protein
2940	 80.48	+1	3331139..3331840	-	233	86159370	-	Adeh_2948	-	hypothetical protein
2941	 80.95	+1	3332020..3332796	+	258	86159371	-	Adeh_2949	-	hypothetical protein
2942	 74.59	0	3332829..3333686	+	285	86159372	-	Adeh_2950	-	hypothetical protein
2943	 79.62	+1	3333712..3334830	-	372	86159373	-	Adeh_2951	-	type I topoisomerase
2944	 73.82	0	3334943..3336019	+	358	86159374	-	Adeh_2952	-	thioesterase superfamily protein
2945	 74.30	0	3336102..3336743	+	213	86159375	-	Adeh_2953	-	hypothetical protein
2946	 70.87	0	3336874..3337968	+	364	86159376	-	Adeh_2954	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2947	 77.12	0	3338000..3339463	+	487	86159377	-	Adeh_2955	-	DEAD/DEAH box helicase-like protein
2948	 78.53	0	3339471..3341729	-	752	86159378	-	Adeh_2956	-	periplasmic sensor hybrid histidine kinase
2949	 76.75	0	3341866..3342351	-	161	86159379	-	Adeh_2957	-	hypothetical protein
2950	 72.35	0	3342675..3343940	-	421	86159380	-	Adeh_2958	-	major facilitator transporter
2951	 79.46	+1	3344165..3344836	-	223	86159381	-	Adeh_2959	-	hypothetical protein
2952	 75.58	0	3345008..3346207	+	399	86159382	-	Adeh_2960	-	NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
2953	 74.21	0	3346351..3346668	+	105	86159383	-	Adeh_2961	-	hypothetical protein
2954	 73.60	0	3346779..3349388	+	869	86159384	-	Adeh_2962	-	hypothetical protein
2955	 69.00	-1	3349472..3351442	-	656	86159385	-	Adeh_2963	-	cytochrome c, putative
2956	 77.95	0	3351657..3352613	-	318	86159386	-	Adeh_2964	-	Beta-lactamase-like
2957	 78.13	0	3353037..3355043	+	668	86159387	-	Adeh_2965	-	hypothetical protein
2958	 80.11	+1	3355175..3356275	+	366	86159388	-	Adeh_2966	-	hypothetical protein
2959	 75.00	0	3356272..3356835	+	187	86159389	-	Adeh_2967	-	putative lipoprotein
2960	 78.26	0	3357103..3362382	+	1759	86159390	-	Adeh_2968	-	Acetyl/propionyl-CoA carboxylase alpha subunit
2961	 79.95	+1	3362401..3363732	-	443	86159391	-	Adeh_2969	-	outer membrane efflux protein
2962	 72.36	0	3363729..3364958	-	409	86159392	-	Adeh_2970	-	hypothetical protein
2963	 73.98	0	3364955..3365665	-	236	86159393	-	Adeh_2971	-	hypothetical protein
2964	 76.43	0	3365726..3367015	-	429	86159394	-	Adeh_2972	-	secretion protein HlyD
2965	 76.64	0	3367348..3370215	+	955	86159395	-	Adeh_2973	-	FAD linked oxidase-like
2966	 71.02	0	3370229..3371905	+	558	86159396	-	Adeh_2974	-	L-lactate transporter
2967	 73.97	0	3371937..3372716	+	259	86159397	-	Adeh_2975	-	hypothetical protein
2968	 75.24	0	3372713..3374089	+	458	86159398	-	Adeh_2976	-	hypothetical protein
2969	 78.17	0	3374082..3374672	+	196	86159399	-	Adeh_2977	-	hypothetical protein
2970	 75.81	0	3374695..3375843	-	382	86159400	-	Adeh_2978	-	hypothetical protein
2971	 76.33	0	3375942..3376655	+	237	86159401	-	Adeh_2979	-	methyltransferase type 12
2972	 70.33	0	3376724..3377350	+	208	86159402	-	Adeh_2980	-	TPR repeat-containing protein
2973	 78.52	0	3377466..3378545	+	359	86159403	-	Adeh_2981	-	hypothetical protein
2974	 75.78	0	3378556..3378939	-	127	86159404	-	Adeh_2982	-	hypothetical protein
2975	 78.08	0	3379049..3379714	+	221	86159405	-	Adeh_2983	-	hypothetical protein
2976	 81.18	+1	3379762..3381249	+	495	86159406	-	Adeh_2984	-	peptidase M48, Ste24p
2977	 82.69	+1	3381246..3382100	+	284	86159407	-	Adeh_2985	-	carbohydrate kinase, PfkB
2978	 79.60	+1	3382454..3383551	+	365	86159408	-	Adeh_2986	-	saccharopine dehydrogenase
2979	 79.04	0	3383606..3384316	-	236	86159409	-	Adeh_2987	-	tRNA/rRNA methyltransferase, SpoU
2980	 73.24	0	3384368..3385036	+	222	86159410	-	Adeh_2988	-	hypothetical protein
2981	 71.93	0	3385126..3385695	+	189	86159411	-	Adeh_2989	-	hypothetical protein
2982	 77.87	0	3385768..3387882	-	704	86159412	-	Adeh_2990	-	GtrA-like protein
2983	 81.11	+1	3388492..3390063	+	523	86159413	-	Adeh_2991	-	hypothetical protein
2984	 77.47	0	3390267..3391016	+	249	86159414	-	Adeh_2992	-	hypothetical protein
2985	 71.69	0	3390988..3392043	-	351	86159415	-	Adeh_2993	-	methyltransferase type 12
2986	 73.82	0	3392369..3393556	+	395	86159416	-	Adeh_2994	-	alanine-glyoxylate aminotransferase
2987	 74.75	0	3393626..3394033	-	135	86159417	-	Adeh_2995	-	response regulator receiver domain-containing protein
2988	 82.26	+1	3394208..3395611	+	467	86159418	-	Adeh_2996	-	hypothetical protein
2989	 72.80	0	3395639..3397072	-	477	86159419	-	Adeh_2997	-	XRE family transcriptional regulator
2990	 73.71	0	3397341..3400676	+	1111	86159420	-	Adeh_2998	-	isocitrate lyase
2991	 76.80	0	3400846..3402069	+	407	86159421	-	Adeh_2999	-	hypothetical protein
2992	 77.18	0	3402078..3402800	+	240	86159422	-	Adeh_3000	-	hypothetical protein
2993	 77.84	0	3402809..3404365	+	518	86159423	-	Adeh_3001	-	4-alpha-glucanotransferase
2994	 68.99	-1	3404332..3406050	-	572	86159424	-	Adeh_3002	-	trehalose synthase-like
2995	 75.90	0	3406076..3406768	+	230	86159425	-	Adeh_3003	-	hypothetical protein
2996	 71.19	0	3406889..3407308	+	139	86159426	-	Adeh_3004	-	signal-transduction protein
2997	 76.14	0	3407466..3408563	+	365	86159427	-	Adeh_3005	-	alanine dehydrogenase/PNT-like protein
2998	 66.33	-1	3408567..3408866	+	99	86159428	-	Adeh_3006	-	pyridine nucleotide transhydrogenase alpha subunit-like
2999	 69.61	-1	3408863..3410257	+	464	86159429	-	Adeh_3007	-	NAD(P) transhydrogenase, beta subunit
3000	 67.71	-1	3410332..3410811	-	159	86159430	-	Adeh_3008	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.