IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2835	 75.51	0	3220683..3221711	-	342	86159265	-	Adeh_2843	-	zinc-binding alcohol dehydrogenase
2836	 70.63	0	3221728..3222156	-	142	86159266	-	Adeh_2844	-	hypothetical protein
2837	 77.29	0	3222274..3222687	+	137	86159267	-	Adeh_2845	-	hypothetical protein
2838	 68.07	-1	3222956..3223240	+	94	86159268	-	Adeh_2846	-	peroxiredoxin-like
2839	 73.97	0	3223243..3223461	+	72	86159269	-	Adeh_2847	-	hypothetical protein
2840	 78.14	0	3223654..3224568	-	304	86159270	-	Adeh_2848	-	LigA
2841	 74.68	0	3224623..3225483	-	286	86159271	-	Adeh_2849	-	hypothetical protein
2842	 78.76	0	3225535..3225840	-	101	86159272	-	Adeh_2850	-	branched chain amino acid ABC transporter
2843	 78.14	0	3225837..3226568	-	243	86159273	-	Adeh_2851	-	AzlC-like protein
2844	 79.30	+1	3226640..3228088	+	482	86159274	-	Adeh_2852	-	GntR family transcriptional regulator
2845	 78.78	0	3228085..3229116	-	343	86159275	-	Adeh_2853	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2846	 81.36	+1	3229126..3230064	-	312	86159276	-	Adeh_2854	-	hypothetical protein
2847	 72.49	0	3230195..3231052	+	285	86159277	-	Adeh_2855	-	DNA methylase N-4/N-6
2848	 77.00	0	3231101..3232000	+	299	86159278	-	Adeh_2856	-	CDP-alcohol phosphatidyltransferase
2849	 74.42	0	3232140..3233339	+	399	86159279	-	Adeh_2857	-	CarD family transcriptional regulator
2850	 72.71	0	3233336..3233881	+	181	86159280	-	Adeh_2858	-	hypothetical protein
2851	 83.29	+1	3233893..3234939	+	348	86159281	-	Adeh_2859	-	hypothetical protein
2852	 83.48	+1	3234936..3236606	+	556	86159282	-	Adeh_2860	-	hypothetical protein
2853	 74.04	0	3236700..3237974	+	424	86159283	-	Adeh_2861	-	Sodium/dicarboxylate symporter
2854	 77.32	0	3238142..3238582	+	146	86159284	-	Adeh_2862	-	hypothetical protein
2855	 70.44	0	3238713..3239216	+	167	86159285	-	Adeh_2863	-	heat shock protein Hsp20
2856	 81.20	+1	3239307..3240008	-	233	86159286	-	Adeh_2864	-	hypothetical protein
2857	 78.06	0	3240046..3241362	-	438	86159287	-	Adeh_2865	-	hypothetical protein
2858	 80.73	+1	3241363..3242592	-	409	86159288	-	Adeh_2866	-	FAD linked oxidase-like
2859	 75.87	0	3242589..3244055	-	488	86159289	-	Adeh_2867	-	D-lactate dehydrogenase (cytochrome)
2860	 75.39	0	3244090..3244857	+	255	86159290	-	Adeh_2868	-	hypothetical protein
2861	 75.00	0	3244915..3245178	+	87	86159291	-	Adeh_2869	-	hypothetical protein
2862	 65.78	-1	3245804..3246028	+	74	86159292	-	Adeh_2870	-	hypothetical protein
2863	 66.67	-1	3246025..3246426	+	133	86159293	-	Adeh_2871	-	death-on-curing protein
2864	 61.36	-2	3246581..3246976	-	131	86159294	-	Adeh_2872	-	hypothetical protein
2865	 64.55	-2	3247064..3247771	-	235	86159295	-	Adeh_2873	-	hypothetical protein
2866	 69.11	-1	3247797..3248246	+	149	86159296	-	Adeh_2874	-	hypothetical protein
2867	 69.85	-1	3248443..3249102	-	219	86159297	-	Adeh_2875	-	TetR family transcriptional regulator
2868	 68.18	-1	3249285..3249812	+	175	86159298	-	Adeh_2876	-	hypothetical protein
2869	 73.09	0	3250070..3250801	+	243	86159299	-	Adeh_2877	-	hypothetical protein
2870	 62.01	-2	3250917..3251195	+	92	86159300	-	Adeh_2878	-	hypothetical protein
2871	 64.78	-2	3251504..3251662	+	52	86159301	-	Adeh_2879	-	translation initiation factor 1
2872	 74.04	0	3251687..3252310	-	207	86159302	-	Adeh_2880	-	TetR family transcriptional regulator
2873	 75.18	0	3252428..3252838	+	136	86159303	-	Adeh_2881	-	endoribonuclease L-PSP
2874	 78.51	0	3252898..3254088	+	396	86159304	-	Adeh_2882	-	transcriptional regulator, CadC
2875	 73.72	0	3254081..3254746	-	221	86159305	-	Adeh_2883	-	methyltransferase type 11
2876	 76.22	0	3254890..3256041	-	383	86159306	-	Adeh_2884	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2877	 71.36	0	3256418..3256843	+	141	86159307	-	Adeh_2885	-	glyoxalase/bleomycin resistance protein/dioxygenase
2878	 70.45	0	3256903..3258804	+	633	86159308	-	Adeh_2886	-	AMP-dependent synthetase and ligase
2879	 74.97	0	3258851..3259597	-	248	86159309	-	Adeh_2887	-	Beta-lactamase-like protein
2880	 79.66	+1	3259720..3260304	+	194	86159310	-	Adeh_2888	-	sigma-24 (FecI-like)
2881	 78.40	0	3260301..3260888	+	195	86159311	-	Adeh_2889	-	hypothetical protein
2882	 72.24	0	3260922..3262841	-	639	86159312	-	Adeh_2890	-	TRAP C4-dicarboxylate transport system permease DctM subunit
2883	 71.00	0	3262838..3263506	-	222	86159313	-	Adeh_2891	-	tripartite ATP-independent periplasmic transporter DctQ
2884	 66.75	-1	3263516..3264679	-	387	86159314	-	Adeh_2892	-	TRAP dicarboxylate transporter- DctP subunit
2885	 79.94	+1	3264923..3265540	-	205	86159315	-	Adeh_2893	-	phosphoglycerate mutase
2886	 73.12	0	3265585..3266064	-	159	86159316	-	Adeh_2894	-	cupin 2 domain-containing protein
2887	 76.54	0	3266286..3267926	+	546	86159317	-	Adeh_2895	-	cobalamin vitamin B12-binding / radical SAM protein
2888	 75.94	0	3267950..3270094	-	714	86159318	-	Adeh_2896	-	phosphate acetyltransferase
2889	 71.55	0	3270115..3271362	-	415	86159319	-	Adeh_2897	-	acetate kinase
2890	 78.48	0	3271595..3272263	+	222	86159320	-	Adeh_2898	-	NAD-dependent epimerase/dehydratase
2891	 77.40	0	3272267..3274381	-	704	86159321	-	Adeh_2899	-	WD-40-like beta propeller repeat-containing protein
2892	 75.74	0	3274517..3275938	-	473	86159322	-	Adeh_2900	-	hypothetical protein
2893	 75.00	0	3276120..3276551	+	143	86159323	-	Adeh_2901	-	cupin domain-containing protein
2894	 70.50	0	3276575..3278245	-	556	86159324	-	Adeh_2902	-	respiratory nitrite reductase (cytochrome; ammonia-forming) precursor
2895	 70.39	0	3278286..3278741	-	151	86159325	-	Adeh_2903	-	respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH) precursor
2896	 73.64	0	3278902..3280608	-	568	86159326	-	Adeh_2904	-	AMP-dependent synthetase and ligase
2897	 76.95	0	3280690..3281457	+	255	86159327	-	Adeh_2905	-	phosphoesterase, PA-phosphatase related
2898	 76.63	0	3281282..3282856	-	524	86159328	-	Adeh_2906	-	Alpha amylase, catalytic region
2899	 69.35	-1	3283015..3285396	-	793	86159329	-	Adeh_2907	-	hypothetical protein
2900	 77.26	0	3285614..3286000	-	128	86159330	-	Adeh_2908	-	hypothetical protein
2901	 73.33	0	3286073..3286387	-	104	86159331	-	Adeh_2909	-	hypothetical protein
2902	 70.72	0	3287212..3287532	+	106	86159332	-	Adeh_2910	-	hypothetical protein
2903	 75.79	0	3287577..3288431	-	284	86159333	-	Adeh_2911	-	ErfK/YbiS/YcfS/YnhG
2904	 78.98	0	3288578..3289105	+	175	86159334	-	Adeh_2912	-	hypothetical protein
2905	 75.50	0	3289234..3289686	+	150	86159335	-	Adeh_2913	-	hypothetical protein
2906	 76.83	0	3289712..3290449	+	245	86159336	-	Adeh_2914	-	two component transcriptional regulator
2907	 78.76	0	3290446..3291735	+	429	86159337	-	Adeh_2915	-	periplasmic sensor signal transduction histidine kinase
2908	 71.93	0	3291892..3292176	+	94	86159338	-	Adeh_2916	-	hypothetical protein
2909	 78.17	0	3292247..3293593	+	448	86159339	-	Adeh_2917	-	hypothetical protein
2910	 78.24	0	3293600..3294316	-	238	86159340	-	Adeh_2918	-	hypothetical protein
2911	 78.32	0	3294527..3294955	+	142	86159341	-	Adeh_2919	-	MarR family transcriptional regulator
2912	 77.13	0	3294952..3296184	+	410	86159342	-	Adeh_2920	-	major facilitator transporter
2913	 81.46	+1	3296477..3296902	+	141	86159343	-	Adeh_2921	-	hypothetical protein
2914	 78.81	0	3296984..3298465	+	493	86159344	-	Adeh_2922	-	amidase
2915	 78.40	0	3298450..3299097	+	215	86159345	-	Adeh_2923	-	TetR family transcriptional regulator
2916	 76.01	0	3299094..3299639	-	181	86159346	-	Adeh_2924	-	hypothetical protein
2917	 70.70	0	3299749..3301014	-	421	86159347	-	Adeh_2925	-	N-glycosyltransferase PgaC
2918	 71.82	0	3301025..3303004	-	659	86159348	-	Adeh_2926	-	polysaccharide deacetylase
2919	 75.23	0	3303413..3305362	+	649	86159349	-	Adeh_2927	-	hypothetical protein
2920	 75.00	0	3305527..3306870	+	447	86159350	-	Adeh_2928	-	peptidase M48, Ste24p
2921	 81.71	+1	3306876..3308690	-	604	86159351	-	Adeh_2929	-	UBA/THIF-type NAD/FAD binding protein
2922	 73.90	0	3308928..3309425	-	165	86159352	-	Adeh_2930	-	hypothetical protein
2923	 70.26	0	3309380..3310270	-	296	86159353	-	Adeh_2931	-	hypothetical protein
2924	 69.14	-1	3310355..3311164	-	269	86159354	-	Adeh_2932	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
2925	 67.08	-1	3311164..3313080	-	638	86159355	sdhA	Adeh_2933	-	succinate dehydrogenase flavoprotein subunit
2926	 66.67	-1	3313091..3313756	-	221	86159356	-	Adeh_2934	-	succinate dehydrogenase subunit C
2927	 80.67	+1	3313973..3315814	-	613	86159357	-	Adeh_2935	-	peptidase S41
2928	 70.83	0	3316058..3316369	+	103	86159358	-	Adeh_2936	-	hypothetical protein
2929	 75.06	0	3316434..3318626	-	730	86159359	-	Adeh_2937	-	protease-associated PA
2930	 74.67	0	3318859..3319533	-	224	86159360	-	Adeh_2938	-	hypothetical protein
2931	 74.76	0	3319710..3320747	+	345	86159361	-	Adeh_2939	-	Alpha/beta hydrolase
2932	 75.51	0	3320903..3322327	+	474	86159362	-	Adeh_2940	-	hypothetical protein
2933	 78.65	0	3322475..3323392	+	305	86159363	-	Adeh_2941	-	MCP methyltransferase, CheR-type
2934	 77.43	0	3323385..3325493	+	702	86159364	-	Adeh_2942	-	periplasmic sensor hybrid histidine kinase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.