IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 74.55   STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
225	 71.94	0	255952..259116	+	1054	86156655	-	Adeh_0226	-	acriflavin resistance protein
226	 74.61	0	259141..259656	-	171	86156656	-	Adeh_0227	-	hypothetical protein
227	 74.59	0	259849..260454	+	201	86156657	-	Adeh_0228	-	TetR family transcriptional regulator
228	 81.26	+1	260630..262054	-	474	86156658	-	Adeh_0229	-	FAD dependent oxidoreductase
229	 77.50	0	262231..262839	+	202	86156659	-	Adeh_0230	-	RNA polymerase sigma factor
230	 84.75	+2	262836..264074	+	412	86156660	-	Adeh_0231	-	Fe-S oxidoreductase
231	 71.92	0	264217..265320	+	367	86156661	-	Adeh_0232	-	teichoic acid biosynthesis related protein
232	 75.11	0	265317..265778	+	153	86156662	-	Adeh_0233	-	hypothetical protein
233	 76.24	0	265891..268449	+	852	86156663	-	Adeh_0234	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
234	 71.63	0	268574..270124	+	516	86156664	-	Adeh_0235	-	phosphoglyceromutase
235	 83.70	+2	270197..270883	+	228	86156665	-	Adeh_0236	-	phosphoribosyltransferase
236	 78.39	0	270946..274716	+	1256	86156666	-	Adeh_0237	-	tetratricopeptide protein
237	 81.51	+1	274713..278432	+	1239	86156667	-	Adeh_0238	-	hypothetical protein
238	 77.61	0	278803..279414	-	203	86156668	-	Adeh_0239	-	hypothetical protein
239	 76.86	0	279424..280002	-	192	86156669	-	Adeh_0240	-	TfoX-like
240	 77.63	0	280036..281175	-	379	86156670	-	Adeh_0241	-	coproporphyrinogen III oxidase, anaerobic
241	 81.79	+1	281221..282318	-	365	86156671	-	Adeh_0242	-	hypothetical protein
242	 70.24	0	282520..284592	+	690	86156672	-	Adeh_0243	-	oligopeptide transporter OPT
243	 81.13	+1	285046..287472	-	808	86156673	-	Adeh_0244	-	LigA
244	 78.12	0	287869..288732	+	287	86156674	-	Adeh_0246	-	50S ribosomal protein L11P methyltransferase
245	 80.91	+1	288729..289451	+	240	86156675	-	Adeh_0247	-	hypothetical protein
246	 81.97	+1	289512..290537	+	341	86156676	-	Adeh_0248	-	RDD
247	 81.44	+1	290570..293074	+	834	86156677	-	Adeh_0249	-	HEAT repeat-containing PBS lyase
248	 70.64	0	293218..294777	+	519	86156678	-	Adeh_0250	-	carboxyl transferase
249	 80.82	+1	295094..295750	-	218	86156679	-	Adeh_0251	-	hypothetical protein
250	 64.71	-2	295938..296141	-	67	86156680	-	Adeh_0252	-	cold-shock DNA-binding protein family protein
251	 74.15	0	296293..297468	-	391	86156681	-	Adeh_0253	-	2-nitropropane dioxygenase, NPD
252	 77.85	0	297653..299029	+	458	86156682	-	Adeh_0254	-	hypothetical protein
253	 71.43	0	299213..299947	+	244	86156683	-	Adeh_0255	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
254	 78.49	0	300521..301738	-	405	86156684	-	Adeh_0256	-	histidine kinase
255	 74.89	0	301954..303486	+	510	86156685	-	Adeh_0257	-	carbamoyl-phosphate synthase L chain, ATP-binding protein
256	 72.51	0	303483..303995	+	170	86156686	-	Adeh_0258	-	biotin/lipoyl attachment protein
257	 70.97	0	304068..305717	+	549	86156687	-	Adeh_0259	-	methylmalonyl-CoA mutase
258	 80.31	+1	305724..307541	+	605	86156688	-	Adeh_0260	-	DnaJ domain-containing protein
259	 78.90	0	307554..308117	+	187	86156689	-	Adeh_0261	-	hypothetical protein
260	 75.00	0	308142..308453	-	103	86156690	-	Adeh_0262	-	hypothetical protein
261	 74.83	0	308583..309182	+	199	86156691	-	Adeh_0263	-	hypothetical protein
262	 79.47	+1	309179..309748	-	189	86156692	-	Adeh_0264	-	Fe-S type hydro-lyase tartrate/fumarate beta region
263	 80.19	+1	309958..310896	+	312	86156693	-	Adeh_0265	-	pseudouridine synthase, RluD
264	 67.34	-1	310979..311425	-	148	86156694	-	Adeh_0266	-	biopolymer transport protein ExbD/TolR
265	 62.62	-2	311428..311847	-	139	86156695	-	Adeh_0267	-	biopolymer transport protein ExbD/TolR
266	 70.36	0	311883..312641	-	252	86156696	-	Adeh_0268	-	MotA/TolQ/ExbB proton channel
267	 70.57	0	312694..313488	-	264	86156697	-	Adeh_0269	-	hypothetical protein
268	 67.91	-1	313952..317332	+	1126	86156698	-	Adeh_0270	-	hypothetical protein
269	 68.56	-1	317355..318146	+	263	86156699	-	Adeh_0271	-	hypothetical protein
270	 67.73	-1	318359..319018	-	219	86156700	-	Adeh_0272	-	translation elongation factor Ts (EF-Ts)
271	 70.20	0	319122..320027	-	301	86156701	-	Adeh_0273	-	SSU ribosomal protein S2P
272	 82.35	+1	320429..321493	-	354	86156702	-	Adeh_0274	-	hypothetical protein
273	 67.05	-1	321815..322075	+	86	86156703	-	Adeh_0275	-	peroxiredoxin
274	 78.77	0	322139..323452	+	437	86156704	-	Adeh_0276	-	methyltransferase
275	 77.70	0	323468..324310	+	280	86156705	-	Adeh_0277	-	DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase
276	 77.23	0	324321..325172	+	283	86156706	-	Adeh_0278	-	ribonuclease H
277	 77.76	0	325334..326983	+	549	86156707	-	Adeh_0279	-	hypothetical protein
278	 66.93	-1	327055..327810	+	251	86156708	-	Adeh_0280	-	uridylate kinase
279	 66.49	-1	327830..328396	+	188	86156709	-	Adeh_0281	-	ribosome recycling factor
280	 82.84	+1	328408..328611	+	67	86156710	-	Adeh_0282	-	hypothetical protein
281	 75.99	0	328631..329059	-	142	86156711	-	Adeh_0283	-	hypothetical protein
282	 71.83	0	329230..329733	-	167	86156712	-	Adeh_0284	-	hypothetical protein
283	 75.50	0	329868..331577	-	569	86156713	-	Adeh_0285	-	NH(3)-dependent NAD(+) synthetase
284	 81.68	+1	331606..332511	+	301	86156714	-	Adeh_0286	-	response regulator receiver modulated diguanylate cyclase
285	 83.20	+1	332516..333610	+	364	86156715	-	Adeh_0287	-	ABC-type Fe3+ transporter, periplasmic ligand binding protein
286	 73.04	0	333965..334309	+	114	86156716	-	Adeh_0288	-	LuxR family transcriptional regulator
287	 74.02	0	334453..336450	-	665	86156717	-	Adeh_0289	-	transketolase
288	 84.42	+2	336521..337117	-	198	86156718	-	Adeh_0290	-	hypothetical protein
289	 74.33	0	337127..338665	-	512	86156719	-	Adeh_0291	-	AAA ATPase
290	 82.99	+1	338693..339133	-	146	86156720	-	Adeh_0292	-	putative phosphohistidine phosphatase, SixA
291	 76.20	0	339147..342176	-	1009	86156721	-	Adeh_0293	-	malto-oligosyltrehalose synthase
292	 76.92	0	342213..343772	-	519	86156722	-	Adeh_0294	-	4-alpha-glucanotransferase
293	 79.32	+1	343899..344870	+	323	86156723	-	Adeh_0295	-	glutamate--tRNA ligase
294	 77.10	0	344867..345460	+	197	86156724	-	Adeh_0296	-	tRNA-(MS(2)IO(6)A)-hydroxylase-like
295	 78.93	0	345460..347595	+	711	86156725	-	Adeh_0297	-	periplasmic sensor hybrid histidine kinase
296	 77.58	0	347873..350584	-	903	86156726	-	Adeh_0298	-	peptidase M16-like
297	 76.16	0	350769..352106	+	445	86156727	-	Adeh_0299	-	oxidoreductase FAD/NAD(P)-binding protein
298	 72.34	0	352187..352627	-	146	86156728	-	Adeh_0300	-	hypothetical protein
299	 76.26	0	352630..354318	+	562	86156729	-	Adeh_0301	-	periplasmic sensor signal transduction histidine kinase
300	 75.39	0	354315..355712	+	465	86156730	-	Adeh_0302	-	two component, sigma54 specific, Fis family transcriptional regulator
301	 76.46	0	355792..356271	+	159	86156731	-	Adeh_0303	-	hypothetical protein
302	 81.79	+1	356290..357129	-	279	86156732	-	Adeh_0304	-	fibronectin, type III
303	 78.95	0	357181..358320	+	379	86156733	-	Adeh_0305	-	hypothetical protein
304	 80.19	+1	358315..358935	-	206	86156734	-	Adeh_0306	-	hypothetical protein
305	 76.32	0	359181..360164	+	327	86156735	-	Adeh_0307	-	hypothetical protein
306	 79.06	0	360166..361359	+	397	86156736	-	Adeh_0308	-	hypothetical protein
307	 73.04	0	361374..362267	-	297	86156737	-	Adeh_0309	-	hypothetical protein
308	 67.16	-1	362431..362634	+	67	86156738	-	Adeh_0310	-	4-oxalocrotonate tautomerase
309	 79.64	+1	362684..363454	+	256	86156739	-	Adeh_0311	-	hypothetical protein
310	 78.70	0	363427..364398	-	323	86156740	-	Adeh_0312	-	LysR family transcriptional regulator
311	 68.53	-1	364515..365051	+	178	86156741	-	Adeh_0313	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
312	 75.76	0	365055..365615	+	186	86156742	-	Adeh_0314	-	alkylhydroperoxidase AhpD core
313	 78.69	0	365617..367563	-	648	86156743	-	Adeh_0315	-	SARP family transcriptional regulator
314	 80.31	+1	367966..368991	+	341	86156744	-	Adeh_0316	-	LuxR family transcriptional regulator
315	 79.84	+1	368988..369845	+	285	86156745	-	Adeh_0317	-	LuxR family transcriptional regulator
316	 73.08	0	369960..370739	+	259	86156746	-	Adeh_0318	-	split soret cytochrome c precursor
317	 71.78	0	370763..371896	+	377	86156747	-	Adeh_0319	-	phosphate-selective porin O and P
318	 78.68	0	371948..372721	-	257	86156748	-	Adeh_0320	-	BioH protein, putative
319	 79.14	+1	372915..373748	+	277	86156749	-	Adeh_0321	-	hypothetical protein
320	 70.33	0	373948..376242	+	764	86156750	-	Adeh_0322	-	peptidase M6, immune inhibitor A
321	 77.82	0	376211..379474	-	1087	86156751	-	Adeh_0323	-	hypothetical protein
322	 79.16	+1	379534..382158	+	874	86156752	-	Adeh_0324	-	peptidase M1, membrane alanine aminopeptidase
323	 74.39	0	382168..382620	-	150	86156753	-	Adeh_0325	-	methionine-S-oxide reductase
324	 77.76	0	382699..384780	-	693	86156754	-	Adeh_0326	-	methyl-accepting chemotaxis sensory transducer
74.55	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.