IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2342	 76.12	0	2652934..2655282	+	782	86158772	-	Adeh_2350	-	DnaK family protein
2343	 70.81	0	2655330..2656004	-	224	86158773	-	Adeh_2351	-	hypothetical protein
2344	 74.19	0	2656120..2656584	-	154	86158774	-	Adeh_2352	-	cyclic nucleotide-binding protein
2345	 75.00	0	2656581..2657108	-	175	86158775	-	Adeh_2353	-	hexapaptide repeat-containing transferase
2346	 78.14	0	2657122..2657487	-	121	86158776	-	Adeh_2354	-	hypothetical protein
2347	 74.62	0	2657550..2658944	-	464	86158777	-	Adeh_2355	-	tRNA-i(6)A37 modification enzyme MiaB
2348	 77.87	0	2659022..2660422	-	466	86158778	-	Adeh_2356	-	VWA containing CoxE-like
2349	 74.11	0	2660527..2661762	+	411	86158779	-	Adeh_2357	-	Ste24 endopeptidase
2350	 82.75	+1	2661793..2662998	-	401	86158780	-	Adeh_2358	-	TonB-like protein
2351	 77.22	0	2663142..2664932	-	596	86158781	-	Adeh_2359	-	long-chain-fatty-acid--CoA ligase
2352	 79.73	+1	2665038..2666354	-	438	86158782	-	Adeh_2360	-	(Uracil-5)-methyltransferase
2353	 69.19	-1	2666394..2666750	-	118	86158783	-	Adeh_2361	-	hypothetical protein
2354	 79.55	+1	2666765..2667556	-	263	86158784	-	Adeh_2362	-	hypothetical protein
2355	 70.15	0	2667595..2668254	-	219	86158785	-	Adeh_2363	-	butyryl-CoA:acetate CoA transferase
2356	 70.66	0	2668269..2668970	-	233	86158786	-	Adeh_2364	-	3-oxoacid CoA-transferase, subunit A
2357	 73.69	0	2668980..2670161	-	393	86158787	-	Adeh_2365	-	Acetyl-CoA C-acetyltransferase
2358	 79.84	+1	2670408..2671310	+	300	86158788	-	Adeh_2366	-	peptidase T2, asparaginase 2
2359	 77.73	0	2671336..2672031	-	231	86158789	-	Adeh_2367	-	hypothetical protein
2360	 68.97	-1	2672154..2672933	-	259	86158790	-	Adeh_2368	-	SPFH domain-containing protein/band 7 family protein
2361	 77.45	0	2672989..2674407	-	472	86158791	-	Adeh_2369	-	nodulation efficiency protein NfeD
2362	 73.85	0	2674410..2675147	-	245	86158792	-	Adeh_2370	-	phage SPO1 DNA polymerase-related protein
2363	 71.53	0	2675329..2676273	+	314	86158793	-	Adeh_2371	-	hypothetical protein
2364	 75.70	0	2676368..2677585	-	405	86158794	-	Adeh_2372	-	phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase
2365	 79.17	+1	2677660..2678739	+	359	86158795	-	Adeh_2373	-	abortive infection protein
2366	 76.37	0	2678817..2679362	+	181	86158796	-	Adeh_2374	-	hypothetical protein
2367	 77.12	0	2679385..2679996	+	203	86158797	-	Adeh_2375	-	hypothetical protein
2368	 75.56	0	2680039..2681241	-	400	86158798	-	Adeh_2376	-	SAM-dependent methyltransferase
2369	 77.78	0	2681238..2682578	-	446	86158799	-	Adeh_2377	-	radical SAM family protein
2370	 65.74	-1	2682884..2683528	+	214	86158800	-	Adeh_2378	-	sigma-24 (FecI-like)
2371	 76.59	0	2683551..2684366	+	271	86158801	-	Adeh_2379	-	putative transmembrane transcriptional regulator (anti-sigma factor)
2372	 78.13	0	2684533..2686119	+	528	86158802	-	Adeh_2380	-	response regulator receiver domain-containing protein
2373	 74.92	0	2686135..2686437	-	100	86158803	-	Adeh_2381	-	hypothetical protein
2374	 79.67	+1	2686603..2686971	-	122	86158804	-	Adeh_2382	-	hypothetical protein
2375	 73.33	0	2686983..2687207	-	74	86158805	-	Adeh_2383	-	hypothetical protein
2376	 76.62	0	2687289..2688896	-	535	86158806	-	Adeh_2384	-	integral membrane protein MviN
2377	 71.64	0	2688896..2690041	-	381	86158807	-	Adeh_2385	-	hypothetical protein
2378	 79.74	+1	2690041..2690820	-	259	86158808	-	Adeh_2386	-	TPR repeat-containing protein
2379	 70.85	0	2690817..2691581	-	254	86158809	-	Adeh_2387	-	pantothenate kinase
2380	 76.33	0	2691655..2692647	-	330	86158810	-	Adeh_2388	-	biotin--acetyl-CoA-carboxylase ligase
2381	 77.30	0	2692700..2693536	-	278	86158811	-	Adeh_2389	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2382	 70.05	0	2693551..2696709	-	1052	86158812	-	Adeh_2390	-	valyl-tRNA synthetase
2383	 81.63	+1	2696807..2698216	-	469	86158813	-	Adeh_2391	-	response regulator receiver domain-containing protein
2384	 79.05	0	2698352..2699005	-	217	86158814	-	Adeh_2392	-	CheW-like protein
2385	 73.10	0	2699145..2700512	+	455	86158815	-	Adeh_2393	-	response regulator receiver modulated diguanylate cyclase
2386	 69.10	-1	2700769..2702415	-	548	86158816	groEL	Adeh_2394	-	chaperonin GroEL
2387	 76.27	0	2702675..2703736	+	353	86158817	-	Adeh_2395	-	TPR repeat-containing protein
2388	 73.85	0	2703787..2704788	-	333	86158818	-	Adeh_2396	-	patatin
2389	 77.70	0	2704825..2705667	-	280	86158819	-	Adeh_2397	-	hypothetical protein
2390	 77.78	0	2705664..2706131	-	155	86158820	-	Adeh_2398	-	hypothetical protein
2391	 78.89	0	2706128..2707027	-	299	86158821	-	Adeh_2399	-	ABC transporter, ATPase subunit
2392	 75.87	0	2707024..2708403	-	459	86158822	-	Adeh_2400	-	periplasmic copper-binding, NosD
2393	 70.47	0	2708408..2709064	-	218	86158823	-	Adeh_2401	-	hypothetical protein
2394	 67.36	-1	2709096..2710958	-	620	86158824	-	Adeh_2402	-	nitrous-oxide reductase
2395	 71.79	0	2710982..2712268	-	428	86158825	-	Adeh_2403	-	hypothetical protein
2396	 72.20	0	2712271..2713626	-	451	86158826	-	Adeh_2404	-	cytochrome b/b6-like
2397	 73.18	0	2713637..2714143	-	168	86158827	-	Adeh_2405	-	Rieske Fe-S protein
2398	 75.55	0	2714164..2716110	-	648	86158828	-	Adeh_2406	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2399	 76.90	0	2716305..2718737	+	810	86158829	-	Adeh_2407	-	AAA ATPase
2400	 83.86	+2	2718785..2719639	+	284	86158830	-	Adeh_2408	-	hypothetical protein
2401	 75.53	0	2719627..2720190	-	187	86158831	-	Adeh_2409	-	nicotinate-nucleotide adenylyltransferase
2402	 80.60	+1	2720187..2720753	-	188	86158832	-	Adeh_2410	-	hypothetical protein
2403	 76.81	0	2720783..2722024	-	413	86158833	-	Adeh_2411	-	hypothetical protein
2404	 77.58	0	2722122..2723156	-	344	86158834	-	Adeh_2412	-	hypothetical protein
2405	 78.39	0	2723156..2724895	-	579	86158835	-	Adeh_2413	-	peptidase C14, caspase catalytic subunit p20
2406	 80.48	+1	2725015..2725854	-	279	86158836	-	Adeh_2414	-	hypothetical protein
2407	 77.99	0	2725859..2726476	-	205	86158837	-	Adeh_2415	-	sigma-24 (FecI-like)
2408	 81.15	+1	2726491..2727498	-	335	86158838	-	Adeh_2416	-	hypothetical protein
2409	 81.73	+1	2727502..2728344	-	280	86158839	-	Adeh_2417	-	polysaccharide deacetylase
2410	 75.29	0	2728352..2729464	-	370	86158840	-	Adeh_2418	-	phosphatidylinositol alpha-mannosyltransferase
2411	 80.85	+1	2729495..2729776	-	93	86158841	-	Adeh_2419	-	hypothetical protein
2412	 78.12	0	2729878..2730366	+	162	86158842	-	Adeh_2420	-	hypothetical protein
2413	 83.67	+2	2730401..2731294	-	297	86158843	-	Adeh_2421	-	TPR repeat-containing protein
2414	 77.96	0	2731380..2733770	+	796	86158844	-	Adeh_2422	-	DNA mismatch repair protein MutS-like
2415	 69.40	-1	2733973..2735253	+	426	86158845	-	Adeh_2423	-	hypothetical protein
2416	 67.19	-1	2735332..2736483	+	383	86158846	-	Adeh_2424	-	ABC branched chain amino acid transporter, periplasmic ligand binding protein
2417	 66.55	-1	2736694..2737560	+	288	86158847	-	Adeh_2425	-	ABC branched-chain amino acid transporter, inner membrane subunit
2418	 68.74	-1	2737565..2738671	+	368	86158848	-	Adeh_2426	-	ABC branched-chain amino acid transporter, inner membrane subunit
2419	 65.83	-1	2738683..2739402	+	239	86158849	-	Adeh_2427	-	ABC branched-chain amino acid transporter, ATPase subunit
2420	 65.96	-1	2739402..2740106	+	234	86158850	-	Adeh_2428	-	ABC branched-chain amino acid transporter, ATPase subunit
2421	 68.44	-1	2740109..2740558	+	149	86158851	-	Adeh_2429	-	signal transduction protein
2422	 73.61	0	2740619..2741338	-	239	86158852	-	Adeh_2430	-	hypothetical protein
2423	 81.27	+1	2741459..2741773	+	104	86158853	-	Adeh_2431	-	hypothetical protein
2424	 76.37	0	2741963..2744539	-	858	86158854	-	Adeh_2432	-	ribonuclease R
2425	 74.06	0	2744541..2745284	-	247	86158855	-	Adeh_2433	-	hypothetical protein
2426	 80.64	+1	2745486..2746709	+	407	86158856	-	Adeh_2434	-	molybdopterin molybdochelatase
2427	 73.36	0	2746745..2747491	+	248	86158857	-	Adeh_2435	-	Fis family transcriptional regulator
2428	 69.08	-1	2747592..2747798	+	68	86158858	-	Adeh_2436	-	XRE family transcriptional regulator
2429	 65.95	-1	2747970..2748248	+	92	86158859	-	Adeh_2437	-	hypothetical protein
2430	 77.37	0	2748292..2749665	+	457	86158860	-	Adeh_2438	-	radical SAM family protein
2431	 79.90	+1	2749736..2750536	-	266	86158861	-	Adeh_2439	-	methyltransferase type 11
2432	 76.78	0	2750580..2751854	-	424	86158862	-	Adeh_2440	-	biotin carboxylase-like
2433	 78.21	0	2751949..2753178	-	409	86158863	-	Adeh_2441	-	pyruvate dehydrogenase (lipoamide)
2434	 77.19	0	2753282..2754184	+	300	86158864	-	Adeh_2442	-	LysR family transcriptional regulator
2435	 72.01	0	2754387..2754779	+	130	86158865	-	Adeh_2443	-	response regulator receiver domain-containing protein
2436	 70.56	0	2754809..2755912	+	367	86158866	-	Adeh_2444	-	histidine kinase
2437	 67.40	-1	2756093..2756365	+	90	86158867	-	Adeh_2445	-	hypothetical protein
2438	 70.57	0	2756595..2756876	-	93	86158868	-	Adeh_2446	-	hypothetical protein
2439	 79.96	+1	2757165..2758277	+	370	86158869	-	Adeh_2447	-	hypothetical protein
2440	 74.63	0	2758621..2760090	-	489	86158870	-	Adeh_2448	-	aminopeptidase DmpA
2441	 72.44	0	2760194..2762377	-	727	86158871	-	Adeh_2449	-	D-alanine--D-alanine ligase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.