IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 74.55   STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2193	 75.76	0	2482006..2482335	-	109	86158623	-	Adeh_2201	-	thioredoxin
2194	 81.07	+1	2482391..2483404	-	337	86158624	-	Adeh_2202	-	LysR family transcriptional regulator
2195	 77.78	0	2483421..2484356	-	311	86158625	-	Adeh_2203	-	hypothetical protein
2196	 74.44	0	2484576..2486480	-	634	86158626	-	Adeh_2204	-	PKD
2197	 72.94	0	2486695..2487555	-	286	86158627	-	Adeh_2205	-	Pirin-like
2198	 78.91	0	2487663..2489042	-	459	86158628	-	Adeh_2206	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2199	 78.13	0	2489179..2490303	+	374	86158629	-	Adeh_2207	-	hypothetical protein
2200	 78.83	0	2490300..2491253	+	317	86158630	-	Adeh_2208	-	glycosyl transferase, group 1
2201	 78.46	0	2491381..2492364	+	327	86158631	-	Adeh_2209	-	ABC-type nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
2202	 78.13	0	2492358..2494259	+	633	86158632	-	Adeh_2210	-	periplasmic sensor hybrid histidine kinase
2203	 71.88	0	2494298..2494681	+	127	86158633	-	Adeh_2211	-	4-oxalocrotonate tautomerase
2204	 78.68	0	2494697..2495587	-	296	86158634	-	Adeh_2212	-	LysR family transcriptional regulator
2205	 78.18	0	2495760..2496914	+	384	86158635	-	Adeh_2213	-	major facilitator superfamily transporter
2206	 77.85	0	2496918..2497820	-	300	86158636	-	Adeh_2214	-	LysR family transcriptional regulator
2207	 79.84	+1	2497897..2498526	+	209	86158637	-	Adeh_2215	-	nitroreductase
2208	 72.56	0	2498764..2501460	+	898	86158638	-	Adeh_2216	-	hypothetical protein
2209	 74.04	0	2501558..2501896	-	112	86158639	-	Adeh_2217	-	nitrogen regulatory protein P-II (GlnB, GlnK)
2210	 70.81	0	2502170..2503690	+	506	86158640	-	Adeh_2218	-	ammonium transporter
2211	 79.31	+1	2503771..2504205	-	144	86158641	-	Adeh_2219	-	hypothetical protein
2212	 79.38	+1	2504202..2505161	-	319	86158642	-	Adeh_2220	-	5'-3' exonuclease
2213	 73.16	0	2505357..2507606	+	749	86158643	-	Adeh_2221	-	isocitrate lyase
2214	 76.00	0	2507663..2507962	+	99	86158644	-	Adeh_2222	-	thiamineS
2215	 76.61	0	2507967..2509112	+	381	86158645	-	Adeh_2223	-	BNR repeat-containing glycosyl hydrolase
2216	 75.54	0	2509225..2510148	+	307	86158646	-	Adeh_2224	-	hypothetical protein
2217	 80.03	+1	2510312..2511538	+	408	86158647	-	Adeh_2225	-	FAD-binding monooxygenase
2218	 69.19	-1	2511618..2512568	-	316	86158648	-	Adeh_2226	-	malate dehydrogenase (NAD)
2219	 67.79	-1	2512606..2514837	-	743	86158649	-	Adeh_2227	-	isocitrate dehydrogenase, NADP-dependent
2220	 78.58	0	2515077..2516360	-	427	86158650	-	Adeh_2228	-	cyclopropane-fatty-acyl-phospholipid synthase
2221	 72.99	0	2516496..2516843	-	115	86158651	-	Adeh_2229	-	cupin domain-containing protein
2222	 75.36	0	2517042..2520170	+	1042	86158652	-	Adeh_2230	-	hypothetical protein
2223	 79.42	+1	2520198..2520644	-	148	86158653	-	Adeh_2231	-	DoxX
2224	 74.77	0	2520641..2521072	-	143	86158654	-	Adeh_2232	-	anti-sigm factor, ChrR
2225	 79.35	+1	2521129..2522595	+	488	86158655	-	Adeh_2233	-	GntR family transcriptional regulator
2226	 79.07	0	2522605..2523555	-	316	86158656	-	Adeh_2234	-	hypothetical protein
2227	 79.17	+1	2523722..2524297	-	191	86158657	-	Adeh_2235	-	hypothetical protein
2228	 69.75	-1	2524317..2527460	-	1047	86158658	-	Adeh_2236	-	acriflavin resistance protein
2229	 72.66	0	2527462..2528595	-	377	86158659	-	Adeh_2237	-	secretion protein HlyD
2230	 76.80	0	2528645..2529967	-	440	86158660	-	Adeh_2238	-	outer membrane efflux protein
2231	 75.87	0	2530146..2531546	-	466	86158661	-	Adeh_2239	-	two component, sigma54 specific, Fis family transcriptional regulator
2232	 75.18	0	2531521..2532906	-	461	86158662	-	Adeh_2240	-	periplasmic sensor signal transduction histidine kinase
2233	 80.05	+1	2533077..2533928	-	283	86158663	-	Adeh_2241	-	hypothetical protein
2234	 80.79	+1	2534037..2534942	-	301	86158664	-	Adeh_2242	-	LysR family transcriptional regulator
2235	 77.57	0	2535034..2535822	+	262	86158665	-	Adeh_2243	-	beta-lactamase fold-like Zn-dependent hydrolase
2236	 74.23	0	2535891..2536313	+	140	86158666	-	Adeh_2244	-	DoxX
2237	 76.11	0	2536331..2537833	-	500	86158667	-	Adeh_2245	-	methylmalonate-semialdehyde dehydrogenase [acylating]
2238	 78.29	0	2539309..2540538	+	409	86158668	-	Adeh_2246	-	hypothetical protein
2239	 77.21	0	2540555..2541199	+	214	86158669	-	Adeh_2247	-	hypothetical protein
2240	 72.06	0	2541209..2542711	+	500	86158670	-	Adeh_2248	-	hypothetical protein
2241	 72.59	0	2542708..2543703	+	331	86158671	-	Adeh_2249	-	hypothetical protein
2242	 75.20	0	2543864..2544847	+	327	86158672	-	Adeh_2250	-	sigma-24 (FecI-like)
2243	 76.84	0	2544861..2545715	+	284	86158673	-	Adeh_2251	-	Alpha/beta hydrolase fold-1
2244	 75.59	0	2545970..2546395	+	141	86158674	-	Adeh_2252	-	dinitrogenase iron-molybdenum cofactor biosynthesis
2245	 76.48	0	2546349..2548295	-	648	86158675	-	Adeh_2253	-	Fis family transcriptional regulator
2246	 73.50	0	2548575..2549174	+	199	86158676	-	Adeh_2254	-	OsmC-like protein
2247	 79.44	+1	2549237..2550496	+	419	86158677	-	Adeh_2255	-	putative flavoprotein
2248	 79.67	+1	2550514..2551713	+	399	86158678	-	Adeh_2256	-	FAD-binding monooxygenase
2249	 75.45	0	2551751..2554345	+	864	86158679	-	Adeh_2257	-	hypothetical protein
2250	 78.65	0	2554342..2555709	+	455	86158680	-	Adeh_2258	-	type IV secretory pathway VirJ component
2251	 79.15	+1	2555667..2558438	-	923	86158681	-	Adeh_2259	-	cation transporting P-type ATPase
2252	 72.21	0	2558600..2559916	+	438	86158682	-	Adeh_2260	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2253	 75.53	0	2559929..2561203	-	424	86158683	-	Adeh_2261	-	molecular chaperone-like
2254	 80.52	+1	2561200..2562159	-	319	86158684	-	Adeh_2262	-	hypothetical protein
2255	 78.93	0	2562266..2563105	+	279	86158685	-	Adeh_2263	-	PEP phosphonomutase
2256	 73.42	0	2563226..2563462	+	78	86158686	-	Adeh_2264	-	hypothetical protein
2257	 75.89	0	2563520..2563942	-	140	86158687	-	Adeh_2265	-	OsmC-like protein
2258	 79.85	+1	2564068..2565531	-	487	86158688	-	Adeh_2266	-	hypothetical protein
2259	 79.00	0	2565645..2566649	-	334	86158689	-	Adeh_2267	-	AraC family transcriptional regulator
2260	 77.00	0	2566809..2567669	+	286	86158690	-	Adeh_2268	-	methyltransferase type 11
2261	 78.54	0	2567878..2568399	+	173	86158691	-	Adeh_2269	-	hypothetical protein
2262	 75.64	0	2568544..2569524	+	326	86158692	-	Adeh_2270	-	2-dehydropantoate 2-reductase
2263	 74.47	0	2569561..2570892	-	443	86158693	-	Adeh_2271	-	hypothetical protein
2264	 72.56	0	2570990..2571379	-	129	86158694	-	Adeh_2272	-	Caa(3)-type oxidase, subunit IV
2265	 69.35	-1	2571390..2572097	-	235	86158695	-	Adeh_2273	-	cytochrome c oxidase, subunit III
2266	 68.35	-1	2572098..2573762	-	554	86158696	-	Adeh_2274	-	cytochrome-c oxidase
2267	 71.30	0	2573759..2574772	-	337	86158697	-	Adeh_2275	-	cytochrome c oxidase, subunit II
2268	 75.21	0	2574769..2575599	-	276	86158698	-	Adeh_2276	-	uncharacterized protein SCO1/SenC/PrrC-like
2269	 73.64	0	2575627..2576013	-	128	86158699	-	Adeh_2277	-	cytochrome c, class I
2270	 76.38	0	2576072..2577028	-	318	86158700	-	Adeh_2278	-	Beta-lactamase-like
2271	 73.25	0	2577028..2578743	-	571	86158701	-	Adeh_2279	-	sulfate thiol esterase SoxB
2272	 71.72	0	2578762..2579394	-	210	86158702	-	Adeh_2280	-	hypothetical protein
2273	 73.41	0	2579405..2580220	-	271	86158703	-	Adeh_2281	-	hypothetical protein
2274	 69.88	-1	2580253..2580594	-	113	86158704	-	Adeh_2282	-	hypothetical protein
2275	 66.67	-1	2580747..2581058	-	103	86158705	-	Adeh_2283	-	sulfur compound chelating protein SoxZ
2276	 70.35	0	2581076..2581564	-	162	86158706	-	Adeh_2284	-	hypothetical protein
2277	 76.46	0	2581623..2582663	-	346	86158707	-	Adeh_2285	-	cytochrome c, class I
2278	 72.12	0	2582647..2584002	-	451	86158708	-	Adeh_2286	-	molybdopterin-binding oxidoreductase
2279	 80.16	+1	2584192..2584443	-	83	86158709	-	Adeh_2287	-	hypothetical protein
2280	 76.95	0	2584576..2585100	+	174	86158710	-	Adeh_2288	-	hypothetical protein
2281	 74.94	0	2585105..2585962	-	285	86158711	-	Adeh_2289	-	ErfK/YbiS/YcfS/YnhG like protein
2282	 75.79	0	2586006..2586641	-	211	86158712	-	Adeh_2290	-	hypothetical protein
2283	 78.16	0	2586697..2588001	-	434	86158713	-	Adeh_2291	-	hypothetical protein
2284	 67.39	-1	2588015..2590099	-	694	86158714	-	Adeh_2292	-	elongation factor G
2285	 76.26	0	2590765..2591733	-	322	86158715	-	Adeh_2293	-	hypothetical protein
2286	 70.37	0	2591810..2592268	-	152	86158716	-	Adeh_2294	-	Aha1 domain-containing protein
2287	 75.48	0	2592451..2593698	-	415	86158717	-	Adeh_2295	-	Beta-lactamase
2288	 69.63	-1	2593984..2594523	+	179	86158718	-	Adeh_2296	-	hypothetical protein
2289	 73.19	0	2594763..2595605	+	280	86158719	-	Adeh_2297	-	hypothetical protein
2290	 76.28	0	2595602..2596225	-	207	86158720	-	Adeh_2298	-	TetR family transcriptional regulator
2291	 73.05	0	2596282..2597205	+	307	86158721	-	Adeh_2299	-	NAD-dependent epimerase/dehydratase
2292	 75.00	0	2597278..2598537	-	419	86158722	-	Adeh_2300	-	hypothetical protein
74.55	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.