IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2103	 71.00	0	2384927..2385295	+	122	86158533	-	Adeh_2111	-	glyoxalase I
2104	 71.59	0	2385292..2386917	-	541	86158534	-	Adeh_2112	-	peptide chain release factor 3
2105	 73.65	0	2387078..2387521	-	147	86158535	-	Adeh_2113	-	GCN5-related N-acetyltransferase
2106	 73.62	0	2387651..2388643	+	330	86158536	-	Adeh_2114	-	GTP-binding protein, HSR1-related
2107	 72.76	0	2389121..2390089	+	322	86158537	-	Adeh_2115	-	HNH endonuclease
2108	 72.00	0	2390086..2390760	+	224	86158538	-	Adeh_2116	-	hypothetical protein
2109	 76.11	0	2390747..2391424	+	225	86158539	-	Adeh_2117	-	hypothetical protein
2110	 75.17	0	2391485..2392225	+	246	86158540	-	Adeh_2118	-	metallophosphoesterase
2111	 80.87	+1	2392359..2392865	-	168	86158541	-	Adeh_2119	-	GreA/GreB family elongation factor
2112	 74.12	0	2392995..2393987	+	330	86158542	-	Adeh_2120	-	aldo/keto reductase
2113	 72.90	0	2394342..2394983	-	213	86158543	-	Adeh_2121	-	hypothetical protein
2114	 77.49	0	2394980..2395921	-	313	86158544	-	Adeh_2122	-	hypothetical protein
2115	 69.42	-1	2395977..2396303	-	108	86158545	-	Adeh_2123	-	hypothetical protein
2116	 76.14	0	2396377..2399331	-	984	86158546	-	Adeh_2124	-	serine/threonine protein kinase
2117	 78.69	0	2399389..2400843	-	484	86158547	-	Adeh_2125	-	kelch repeat-containing protein
2118	 79.52	+1	2400958..2402202	+	414	86158548	-	Adeh_2126	-	hypothetical protein
2119	 76.45	0	2402214..2402540	-	108	86158549	-	Adeh_2127	-	hypothetical protein
2120	 80.33	+1	2402724..2403572	+	282	86158550	-	Adeh_2128	-	hypothetical protein
2121	 77.64	0	2403577..2405499	-	640	86158551	-	Adeh_2129	-	hypothetical protein
2122	 69.71	-1	2405714..2408371	+	885	86158552	aceE	Adeh_2130	-	pyruvate dehydrogenase subunit E1
2123	 74.95	0	2408389..2410053	+	554	86158553	-	Adeh_2131	-	dihydrolipoamide acetyltransferase
2124	 76.85	0	2410212..2411222	-	336	86158554	-	Adeh_2132	-	sigma-54 dependent trancsriptional regulator
2125	 73.28	0	2411350..2412045	+	231	86158555	-	Adeh_2133	-	hemerythrin HHE cation binding protein
2126	 79.38	+1	2411999..2412289	-	96	86158556	-	Adeh_2134	-	hypothetical protein
2127	 73.31	0	2412766..2413518	+	250	86158557	-	Adeh_2135	-	ABC branched-chain amino acid transporter, ATPase subunit
2128	 74.04	0	2413515..2414246	+	243	86158558	-	Adeh_2136	-	ABC branched-chain amino acid transporter, ATPase subunit
2129	 69.63	-1	2414274..2415488	+	404	86158559	-	Adeh_2137	-	ABC branched-chain amino acid transporter, periplasmic ligand biinding protein
2130	 71.05	0	2415545..2416411	+	288	86158560	-	Adeh_2138	-	ABC branched-chain amino acid transporter, inner membrane subunit
2131	 73.14	0	2416412..2417353	+	313	86158561	-	Adeh_2139	-	ABC branched-chain amino acid transporter, inner membrane subunit
2132	 76.21	0	2417350..2418135	+	261	86158562	-	Adeh_2140	-	3-hydroxybutyrate dehydrogenase
2133	 72.06	0	2418238..2419368	-	376	86158563	-	Adeh_2141	-	hypothetical protein
2134	 68.06	-1	2419661..2420164	-	167	86158564	-	Adeh_2142	-	asparaginase
2135	 77.75	0	2420166..2421374	-	402	86158565	-	Adeh_2143	-	major facilitator transporter
2136	 82.12	+1	2421481..2422224	-	247	86158566	-	Adeh_2144	-	putative transmembrane transcriptional regulator (anti-sigma factor)
2137	 80.03	+1	2422211..2422876	-	221	86158567	-	Adeh_2145	-	sigma-24 (FecI-like)
2138	 80.15	+1	2422921..2424129	+	402	86158568	-	Adeh_2146	-	cytochrome c biogenesis protein
2139	 73.08	0	2424292..2424759	+	155	86158569	-	Adeh_2147	-	YbaK/prolyl-tRNA synthetase associated region
2140	 75.05	0	2424990..2425538	+	182	86158570	-	Adeh_2148	-	outer membrane lipoprotein, putative
2141	 81.68	+1	2425679..2426071	+	130	86158571	-	Adeh_2149	-	hypothetical protein
2142	 81.82	+1	2426091..2426618	-	175	86158572	-	Adeh_2150	-	hypothetical protein
2143	 70.96	0	2426779..2428548	-	589	86158573	-	Adeh_2151	-	hypothetical protein
2144	 75.13	0	2428855..2429244	+	129	86158574	-	Adeh_2152	-	hypothetical protein
2145	 74.89	0	2429293..2430654	-	453	86158575	-	Adeh_2153	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2146	 76.58	0	2431005..2431730	+	241	86158576	-	Adeh_2154	-	DNA-3-methyladenine glycosylase I
2147	 75.67	0	2431727..2432137	-	136	86158577	-	Adeh_2155	-	hypothetical protein
2148	 75.64	0	2432115..2432894	-	259	86158578	-	Adeh_2156	-	hypothetical protein
2149	 72.01	0	2432978..2434624	+	548	86158579	-	Adeh_2157	-	ABC transporter, duplicated ATPase subunits
2150	 75.00	0	2434915..2435370	-	151	86158580	-	Adeh_2158	-	thioesterase, putative
2151	 74.23	0	2435461..2436399	+	312	86158581	-	Adeh_2159	-	2-dehydropantoate 2-reductase
2152	 72.76	0	2436396..2437625	+	409	86158582	-	Adeh_2160	-	hypothetical protein
2153	 72.30	0	2437729..2438616	+	295	86158583	-	Adeh_2161	-	hypothetical protein
2154	 76.00	0	2438650..2439495	-	281	86158584	-	Adeh_2162	-	methyltransferase
2155	 77.29	0	2439553..2439966	+	137	86158585	-	Adeh_2163	-	hypothetical protein
2156	 71.43	0	2439992..2440222	-	76	86158586	-	Adeh_2164	-	hypothetical protein
2157	 70.98	0	2440491..2440907	+	138	86158587	-	Adeh_2165	-	hypothetical protein
2158	 74.76	0	2440947..2441564	+	205	86158588	-	Adeh_2166	-	phospholipid/glycerol acyltransferase
2159	 76.14	0	2441567..2442115	-	182	86158589	-	Adeh_2167	-	hemerythrin HHE cation binding protein
2160	 69.20	-1	2442118..2442552	-	144	86158590	-	Adeh_2168	-	putative PAS/PAC sensor protein
2161	 79.26	+1	2442930..2443739	+	269	86158591	-	Adeh_2169	-	hypothetical protein
2162	 72.43	0	2443736..2447359	+	1207	86158592	-	Adeh_2170	-	nitrate oxidoreductase alpha subunit
2163	 72.45	0	2447383..2448852	+	489	86158593	-	Adeh_2171	-	respiratory nitrate reductase beta subunit
2164	 78.87	0	2448857..2449405	+	182	86158594	-	Adeh_2172	-	respiratory nitrate reductase chaperone NarJ
2165	 75.97	0	2449402..2450100	+	232	86158595	-	Adeh_2173	-	respiratory nitrate reductase gamma subunit
2166	 73.95	0	2450104..2451531	+	475	86158596	-	Adeh_2174	-	nitrate transporter
2167	 78.90	0	2451572..2452429	-	285	86158597	-	Adeh_2175	-	hypothetical protein
2168	 73.16	0	2452480..2453310	-	276	86158598	-	Adeh_2176	-	hypothetical protein
2169	 79.22	+1	2453961..2454677	-	238	86158599	-	Adeh_2177	-	hypothetical protein
2170	 78.81	0	2454863..2455636	-	257	86158600	-	Adeh_2178	-	hypothetical protein
2171	 68.21	-1	2455942..2457174	+	410	86158601	-	Adeh_2179	-	ABC branched-chain amino acid transporter, periplasmic ligand binding protein
2172	 70.74	0	2457301..2458134	+	277	86158602	-	Adeh_2180	-	ABC branched-chain amino acid transporter, inner membrane subunit
2173	 73.81	0	2458149..2460107	+	652	86158603	-	Adeh_2181	-	ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits
2174	 73.78	0	2460120..2460836	+	238	86158604	-	Adeh_2182	-	ABC branched-chain amino acid transporter, ATPase subunit
2175	 78.31	0	2460833..2461777	+	314	86158605	-	Adeh_2183	-	hypothetical protein
2176	 67.91	-1	2461942..2462664	+	240	86158606	-	Adeh_2184	-	hypothetical protein
2177	 76.36	0	2462674..2462931	-	85	86158607	-	Adeh_2185	-	hypothetical protein
2178	 75.90	0	2463074..2463658	-	194	86158608	-	Adeh_2186	-	CheW protein
2179	 72.98	0	2463668..2465329	-	553	86158609	-	Adeh_2187	-	methyl-accepting chemotaxis sensory transducer
2180	 71.67	0	2465417..2466556	-	379	86158610	-	Adeh_2188	-	acetamidase/formamidase
2181	 80.94	+1	2467062..2467916	-	284	86158611	-	Adeh_2189	-	MaoC-like dehydratase
2182	 76.57	0	2468196..2468801	+	201	86158612	-	Adeh_2190	-	hypothetical protein
2183	 79.73	+1	2468830..2469954	-	374	86158613	-	Adeh_2191	-	LuxR family transcriptional regulator
2184	 74.52	0	2470160..2470630	+	156	86158614	-	Adeh_2192	-	hypothetical protein
2185	 68.46	-1	2470638..2471138	-	166	86158615	-	Adeh_2193	-	rubrerythrin
2186	 72.04	0	2471189..2473438	-	749	86158616	-	Adeh_2194	-	cytochrome c assembly protein
2187	 80.39	+1	2473649..2474887	-	412	86158617	-	Adeh_2195	-	protein of unknown function RIO1
2188	 82.51	+1	2474895..2475683	-	262	86158618	-	Adeh_2196	-	translation initiation factor 2
2189	 75.86	0	2475730..2476632	-	300	86158619	-	Adeh_2197	-	LysR family transcriptional regulator
2190	 74.74	0	2476793..2477275	+	160	86158620	-	Adeh_2198	-	signal-transduction protein
2191	 76.60	0	2477286..2478905	-	539	86158621	-	Adeh_2199	-	oxidoreductase
2192	 75.89	0	2479296..2481842	-	848	86158622	-	Adeh_2200	-	PAS/PAC sensor hybrid histidine kinase
2193	 75.76	0	2482006..2482335	-	109	86158623	-	Adeh_2201	-	thioredoxin
2194	 81.07	+1	2482391..2483404	-	337	86158624	-	Adeh_2202	-	LysR family transcriptional regulator
2195	 77.78	0	2483421..2484356	-	311	86158625	-	Adeh_2203	-	hypothetical protein
2196	 74.44	0	2484576..2486480	-	634	86158626	-	Adeh_2204	-	PKD
2197	 72.94	0	2486695..2487555	-	286	86158627	-	Adeh_2205	-	Pirin-like
2198	 78.91	0	2487663..2489042	-	459	86158628	-	Adeh_2206	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2199	 78.13	0	2489179..2490303	+	374	86158629	-	Adeh_2207	-	hypothetical protein
2200	 78.83	0	2490300..2491253	+	317	86158630	-	Adeh_2208	-	glycosyl transferase, group 1
2201	 78.46	0	2491381..2492364	+	327	86158631	-	Adeh_2209	-	ABC-type nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
2202	 78.13	0	2492358..2494259	+	633	86158632	-	Adeh_2210	-	periplasmic sensor hybrid histidine kinase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.