IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2065	 76.41	0	2336262..2336990	+	242	86158495	-	Adeh_2073	-	hypothetical protein
2066	 70.68	0	2337090..2337413	+	107	86158496	-	Adeh_2074	-	peptidylprolyl isomerase, FKBP-type
2067	 71.40	0	2337533..2338060	+	175	86158497	-	Adeh_2075	-	rubrerythrin
2068	 74.73	0	2338073..2339089	-	338	86158498	-	Adeh_2076	-	aldo/keto reductase
2069	 76.81	0	2339153..2339704	-	183	86158499	-	Adeh_2077	-	ribonuclease H
2070	 77.05	0	2339820..2340599	+	259	86158500	-	Adeh_2078	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2071	 75.60	0	2340574..2342028	-	484	86158501	-	Adeh_2079	-	peptidase M20C, Xaa-His dipeptidase
2072	 74.40	0	2342242..2342823	+	193	86158502	-	Adeh_2080	-	hypothetical protein
2073	 82.43	+1	2342820..2343701	-	293	86158503	-	Adeh_2081	-	hypothetical protein
2074	 83.33	+1	2343742..2344149	-	135	86158504	-	Adeh_2082	-	peptidoglycan-binding protein
2075	 74.70	0	2344146..2345303	-	385	86158505	-	Adeh_2083	-	hypothetical protein
2076	 78.45	0	2345369..2346454	-	361	86158506	-	Adeh_2084	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
2077	 68.19	-1	2346580..2347764	+	394	86158507	-	Adeh_2085	-	pyrophosphate-dependent phosphofructokinase
2078	 77.26	0	2347819..2348649	-	276	86158508	-	Adeh_2086	-	putative formate dehydrogenase formation protein
2079	 70.81	0	2348735..2350930	-	731	86158509	-	Adeh_2087	-	4Fe-4S ferredoxin, iron-sulfur binding protein
2080	 67.16	-1	2350958..2353396	-	812	86158510	-	Adeh_2088	-	formate dehydrogenase
2081	 68.58	-1	2353445..2354020	-	191	86158511	-	Adeh_2089	-	molybdopterin oxidoreductase Fe4S4 region
2082	 77.36	0	2354500..2356791	+	763	86158512	-	Adeh_2090	-	GAF sensor signal transduction histidine kinase
2083	 79.93	+1	2356807..2357643	-	278	86158513	-	Adeh_2091	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease VIII
2084	 78.79	0	2357643..2362253	-	1536	86158514	-	Adeh_2092	-	DEAD/DEAH box helicase-like
2085	 84.47	+2	2362263..2362919	-	218	86158515	-	Adeh_2093	-	hypothetical protein
2086	 72.38	0	2363097..2364287	+	396	86158516	-	Adeh_2094	-	2-amino-3-ketobutyrate coenzyme A ligase
2087	 70.33	0	2364316..2365353	+	345	86158517	tdh	Adeh_2095	-	L-threonine 3-dehydrogenase
2088	 70.80	0	2365858..2367405	+	515	86158518	-	Adeh_2096	-	flavocytochrome c
2089	 75.94	0	2367730..2368182	+	150	86158519	-	Adeh_2097	-	hypothetical protein
2090	 74.79	0	2368179..2369360	+	393	86158520	-	Adeh_2098	-	hypothetical protein
2091	 76.88	0	2369537..2370388	+	283	86158521	-	Adeh_2099	-	phosphoesterase, PA-phosphatase related
2092	 69.99	-1	2370554..2371876	-	440	86158522	-	Adeh_2100	-	Sodium/dicarboxylate symporter
2093	 72.34	0	2372214..2373623	-	469	86158523	-	Adeh_2101	-	two component, sigma54 specific, Fis family transcriptional regulator
2094	 75.00	0	2373620..2375347	-	575	86158524	-	Adeh_2102	-	histidine kinase
2095	 70.63	0	2376240..2378057	-	605	86158525	-	Adeh_2103	-	cytochrome c assembly protein
2096	 69.21	-1	2378054..2379232	-	392	86158526	-	Adeh_2104	-	hypothetical protein
2097	 73.91	0	2379219..2379908	-	229	86158527	-	Adeh_2105	-	hypothetical protein
2098	 75.74	0	2380213..2381160	+	315	86158528	-	Adeh_2106	-	cation diffusion facilitator family transporter
2099	 74.70	0	2381245..2382066	+	273	86158529	-	Adeh_2107	-	methyltransferase type 11
2100	 70.87	0	2382185..2383255	+	356	86158530	-	Adeh_2108	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2101	 73.14	0	2383259..2384371	-	370	86158531	-	Adeh_2109	-	L-alanine dehydrogenase
2102	 74.55	0	2384496..2384888	+	130	86158532	-	Adeh_2110	-	TraR/DksA family transcriptional regulator
2103	 71.00	0	2384927..2385295	+	122	86158533	-	Adeh_2111	-	glyoxalase I
2104	 71.59	0	2385292..2386917	-	541	86158534	-	Adeh_2112	-	peptide chain release factor 3
2105	 73.65	0	2387078..2387521	-	147	86158535	-	Adeh_2113	-	GCN5-related N-acetyltransferase
2106	 73.62	0	2387651..2388643	+	330	86158536	-	Adeh_2114	-	GTP-binding protein, HSR1-related
2107	 72.76	0	2389121..2390089	+	322	86158537	-	Adeh_2115	-	HNH endonuclease
2108	 72.00	0	2390086..2390760	+	224	86158538	-	Adeh_2116	-	hypothetical protein
2109	 76.11	0	2390747..2391424	+	225	86158539	-	Adeh_2117	-	hypothetical protein
2110	 75.17	0	2391485..2392225	+	246	86158540	-	Adeh_2118	-	metallophosphoesterase
2111	 80.87	+1	2392359..2392865	-	168	86158541	-	Adeh_2119	-	GreA/GreB family elongation factor
2112	 74.12	0	2392995..2393987	+	330	86158542	-	Adeh_2120	-	aldo/keto reductase
2113	 72.90	0	2394342..2394983	-	213	86158543	-	Adeh_2121	-	hypothetical protein
2114	 77.49	0	2394980..2395921	-	313	86158544	-	Adeh_2122	-	hypothetical protein
2115	 69.42	-1	2395977..2396303	-	108	86158545	-	Adeh_2123	-	hypothetical protein
2116	 76.14	0	2396377..2399331	-	984	86158546	-	Adeh_2124	-	serine/threonine protein kinase
2117	 78.69	0	2399389..2400843	-	484	86158547	-	Adeh_2125	-	kelch repeat-containing protein
2118	 79.52	+1	2400958..2402202	+	414	86158548	-	Adeh_2126	-	hypothetical protein
2119	 76.45	0	2402214..2402540	-	108	86158549	-	Adeh_2127	-	hypothetical protein
2120	 80.33	+1	2402724..2403572	+	282	86158550	-	Adeh_2128	-	hypothetical protein
2121	 77.64	0	2403577..2405499	-	640	86158551	-	Adeh_2129	-	hypothetical protein
2122	 69.71	-1	2405714..2408371	+	885	86158552	aceE	Adeh_2130	-	pyruvate dehydrogenase subunit E1
2123	 74.95	0	2408389..2410053	+	554	86158553	-	Adeh_2131	-	dihydrolipoamide acetyltransferase
2124	 76.85	0	2410212..2411222	-	336	86158554	-	Adeh_2132	-	sigma-54 dependent trancsriptional regulator
2125	 73.28	0	2411350..2412045	+	231	86158555	-	Adeh_2133	-	hemerythrin HHE cation binding protein
2126	 79.38	+1	2411999..2412289	-	96	86158556	-	Adeh_2134	-	hypothetical protein
2127	 73.31	0	2412766..2413518	+	250	86158557	-	Adeh_2135	-	ABC branched-chain amino acid transporter, ATPase subunit
2128	 74.04	0	2413515..2414246	+	243	86158558	-	Adeh_2136	-	ABC branched-chain amino acid transporter, ATPase subunit
2129	 69.63	-1	2414274..2415488	+	404	86158559	-	Adeh_2137	-	ABC branched-chain amino acid transporter, periplasmic ligand biinding protein
2130	 71.05	0	2415545..2416411	+	288	86158560	-	Adeh_2138	-	ABC branched-chain amino acid transporter, inner membrane subunit
2131	 73.14	0	2416412..2417353	+	313	86158561	-	Adeh_2139	-	ABC branched-chain amino acid transporter, inner membrane subunit
2132	 76.21	0	2417350..2418135	+	261	86158562	-	Adeh_2140	-	3-hydroxybutyrate dehydrogenase
2133	 72.06	0	2418238..2419368	-	376	86158563	-	Adeh_2141	-	hypothetical protein
2134	 68.06	-1	2419661..2420164	-	167	86158564	-	Adeh_2142	-	asparaginase
2135	 77.75	0	2420166..2421374	-	402	86158565	-	Adeh_2143	-	major facilitator transporter
2136	 82.12	+1	2421481..2422224	-	247	86158566	-	Adeh_2144	-	putative transmembrane transcriptional regulator (anti-sigma factor)
2137	 80.03	+1	2422211..2422876	-	221	86158567	-	Adeh_2145	-	sigma-24 (FecI-like)
2138	 80.15	+1	2422921..2424129	+	402	86158568	-	Adeh_2146	-	cytochrome c biogenesis protein
2139	 73.08	0	2424292..2424759	+	155	86158569	-	Adeh_2147	-	YbaK/prolyl-tRNA synthetase associated region
2140	 75.05	0	2424990..2425538	+	182	86158570	-	Adeh_2148	-	outer membrane lipoprotein, putative
2141	 81.68	+1	2425679..2426071	+	130	86158571	-	Adeh_2149	-	hypothetical protein
2142	 81.82	+1	2426091..2426618	-	175	86158572	-	Adeh_2150	-	hypothetical protein
2143	 70.96	0	2426779..2428548	-	589	86158573	-	Adeh_2151	-	hypothetical protein
2144	 75.13	0	2428855..2429244	+	129	86158574	-	Adeh_2152	-	hypothetical protein
2145	 74.89	0	2429293..2430654	-	453	86158575	-	Adeh_2153	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2146	 76.58	0	2431005..2431730	+	241	86158576	-	Adeh_2154	-	DNA-3-methyladenine glycosylase I
2147	 75.67	0	2431727..2432137	-	136	86158577	-	Adeh_2155	-	hypothetical protein
2148	 75.64	0	2432115..2432894	-	259	86158578	-	Adeh_2156	-	hypothetical protein
2149	 72.01	0	2432978..2434624	+	548	86158579	-	Adeh_2157	-	ABC transporter, duplicated ATPase subunits
2150	 75.00	0	2434915..2435370	-	151	86158580	-	Adeh_2158	-	thioesterase, putative
2151	 74.23	0	2435461..2436399	+	312	86158581	-	Adeh_2159	-	2-dehydropantoate 2-reductase
2152	 72.76	0	2436396..2437625	+	409	86158582	-	Adeh_2160	-	hypothetical protein
2153	 72.30	0	2437729..2438616	+	295	86158583	-	Adeh_2161	-	hypothetical protein
2154	 76.00	0	2438650..2439495	-	281	86158584	-	Adeh_2162	-	methyltransferase
2155	 77.29	0	2439553..2439966	+	137	86158585	-	Adeh_2163	-	hypothetical protein
2156	 71.43	0	2439992..2440222	-	76	86158586	-	Adeh_2164	-	hypothetical protein
2157	 70.98	0	2440491..2440907	+	138	86158587	-	Adeh_2165	-	hypothetical protein
2158	 74.76	0	2440947..2441564	+	205	86158588	-	Adeh_2166	-	phospholipid/glycerol acyltransferase
2159	 76.14	0	2441567..2442115	-	182	86158589	-	Adeh_2167	-	hemerythrin HHE cation binding protein
2160	 69.20	-1	2442118..2442552	-	144	86158590	-	Adeh_2168	-	putative PAS/PAC sensor protein
2161	 79.26	+1	2442930..2443739	+	269	86158591	-	Adeh_2169	-	hypothetical protein
2162	 72.43	0	2443736..2447359	+	1207	86158592	-	Adeh_2170	-	nitrate oxidoreductase alpha subunit
2163	 72.45	0	2447383..2448852	+	489	86158593	-	Adeh_2171	-	respiratory nitrate reductase beta subunit
2164	 78.87	0	2448857..2449405	+	182	86158594	-	Adeh_2172	-	respiratory nitrate reductase chaperone NarJ
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.