IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1613	 70.91	0	1857168..1858109	+	313	86158043	-	Adeh_1618	-	aspartate carbamoyltransferase catalytic subunit
1614	 75.42	0	1858140..1859441	+	433	86158044	-	Adeh_1619	-	dihydroorotase
1615	 72.64	0	1859438..1860559	+	373	86158045	-	Adeh_1620	-	carbamoyl phosphate synthase small subunit
1616	 72.36	0	1860556..1861257	+	233	86158046	-	Adeh_1621	-	hypothetical protein
1617	 78.58	0	1861270..1861806	-	178	86158047	-	Adeh_1622	-	hypothetical protein
1618	 75.84	0	1861955..1863088	+	377	86158048	-	Adeh_1623	-	PAS/PAC sensor signal transduction histidine kinase
1619	 78.37	0	1863154..1863828	+	224	86158049	-	Adeh_1624	-	YdjC-like protein
1620	 69.10	-1	1863974..1865287	+	437	86158050	-	Adeh_1625	-	isocitrate dehydrogenase (NADP)
1621	 69.65	-1	1865319..1866257	+	312	86158051	-	Adeh_1626	-	malate dehydrogenase (NAD)
1622	 70.09	0	1866335..1867501	+	388	86158052	-	Adeh_1627	-	succinyl-CoA synthetase (ADP-forming) beta subunit
1623	 73.49	0	1867544..1868569	+	341	86158053	-	Adeh_1628	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
1624	 64.86	-2	1868674..1869117	+	147	86158054	-	Adeh_1629	-	nucleoside diphosphate kinase
1625	 73.69	0	1869259..1870653	+	464	86158055	-	Adeh_1630	-	hypothetical protein
1626	 73.64	0	1870666..1871784	+	372	86158056	-	Adeh_1631	-	hypothetical protein
1627	 71.64	0	1871832..1872776	+	314	86158057	-	Adeh_1632	-	carbohydrate kinase, PfkB
1628	 69.80	-1	1872826..1873560	+	244	86158058	-	Adeh_1633	-	bis(5'nucleosyl)-tetraphosphatase, ApaH
1629	 83.45	+1	1873582..1875816	-	744	86158059	-	Adeh_1634	-	WD-40 repeat-containing protein
1630	 80.69	+1	1875955..1877886	+	643	86158060	-	Adeh_1635	-	hypothetical protein
1631	 82.04	+1	1877903..1878793	+	296	86158061	-	Adeh_1636	-	HEAT repeat-containing PBS lyase
1632	 76.87	0	1878848..1879435	+	195	86158062	-	Adeh_1637	-	hypothetical protein
1633	 74.59	0	1879435..1880760	+	441	86158063	-	Adeh_1638	-	homoserine dehydrogenase
1634	 72.34	0	1880827..1881249	+	140	86158064	-	Adeh_1639	-	4-hydroxybenzoyl-CoA thioesterase
1635	 73.60	0	1881253..1882218	+	321	86158065	glpX	Adeh_1640	-	fructose 1,6-bisphosphatase II
1636	 68.24	-1	1882235..1882678	+	147	86158066	-	Adeh_1641	-	cyclase/dehydrase
1637	 71.24	0	1883342..1884631	+	429	86158067	-	Adeh_1642	-	enolase
1638	 71.05	0	1884830..1886221	+	463	86158068	-	Adeh_1643	-	thiamine biosynthesis protein ThiC
1639	 76.08	0	1886789..1887733	+	314	86158069	-	Adeh_1644	-	hydroxymethylglutaryl-CoA lyase
1640	 77.13	0	1887735..1888508	+	257	86158070	-	Adeh_1645	-	short chain enoyl-CoA hydratase
1641	 72.83	0	1888555..1890129	+	524	86158071	-	Adeh_1646	-	propionyl-CoA carboxylase
1642	 73.60	0	1890138..1891277	+	379	86158072	-	Adeh_1647	-	butyryl-CoA dehydrogenase
1643	 74.73	0	1891344..1892657	+	437	86158073	-	Adeh_1648	-	hypothetical protein
1644	 76.04	0	1892657..1893691	+	344	86158074	-	Adeh_1649	-	LAO/AO transport system ATPase
1645	 79.88	+1	1893707..1894864	+	385	86158075	-	Adeh_1650	-	ribonuclease III
1646	 71.73	0	1894941..1895612	+	223	86158076	-	Adeh_1651	-	peptidylprolyl isomerase
1647	 67.46	-1	1895672..1896178	+	168	86158077	-	Adeh_1652	-	peptidylprolyl isomerase
1648	 71.70	0	1896256..1897188	+	310	86158078	-	Adeh_1653	-	small GTP-binding protein Era
1649	 73.10	0	1897185..1898582	+	465	86158079	-	Adeh_1654	-	small GTP-binding protein
1650	 75.68	0	1898695..1899426	+	243	86158080	-	Adeh_1655	-	hypothetical protein
1651	 77.84	0	1899423..1900514	+	363	86158081	-	Adeh_1656	-	PQQ repeat-containing protein
1652	 77.69	0	1900511..1900909	+	132	86158082	-	Adeh_1657	-	NUDIX hydrolase
1653	 69.28	-1	1901114..1901725	+	203	86158083	-	Adeh_1658	-	hypothetical protein
1654	 76.12	0	1902535..1903941	-	468	86158084	-	Adeh_1659	-	cytochrome c family protein
1655	 81.47	+1	1904149..1906053	+	634	86158085	-	Adeh_1660	-	hypothetical protein
1656	 76.04	0	1906077..1906460	-	127	86158086	-	Adeh_1661	-	hypothetical protein
1657	 74.85	0	1906636..1907283	-	215	86158087	-	Adeh_1662	-	MerR family transcriptional regulator
1658	 73.78	0	1907452..1908126	+	224	86158088	-	Adeh_1663	-	GTP cyclohydrolase II
1659	 76.12	0	1908147..1909310	-	387	86158089	-	Adeh_1664	-	butyryl-CoA dehydrogenase
1660	 70.34	0	1909392..1910534	-	380	86158090	-	Adeh_1665	-	butyryl-CoA dehydrogenase
1661	 75.10	0	1910608..1911390	-	260	86158091	-	Adeh_1666	-	short chain enoyl-CoA hydratase
1662	 71.91	0	1911403..1912260	-	285	86158092	-	Adeh_1667	-	3-hydroxyacyl-CoA dehydrogenase
1663	 79.34	+1	1912399..1914591	+	730	86158093	-	Adeh_1668	-	PAS/PAC sensor signal transduction histidine kinase
1664	 68.97	-1	1914696..1915259	-	187	86158094	-	Adeh_1669	-	hypothetical protein
1665	 84.13	+2	1915458..1917089	-	543	86158095	-	Adeh_1670	-	hypothetical protein
1666	 79.82	+1	1917224..1917793	-	189	86158096	-	Adeh_1671	-	dual specificity protein phosphatase
1667	 77.78	0	1917868..1918209	-	113	86158097	-	Adeh_1672	-	hypothetical protein
1668	 75.76	0	1918206..1918700	-	164	86158098	-	Adeh_1673	-	hypothetical protein
1669	 72.47	0	1918715..1919800	-	361	86158099	-	Adeh_1674	-	hypothetical protein
1670	 71.01	0	1920325..1921269	+	314	86158100	-	Adeh_1675	-	magnesium and cobalt transport protein CorA
1671	 77.78	0	1921273..1922388	-	371	86158101	-	Adeh_1676	-	RNA-3'-phosphate cyclase
1672	 75.36	0	1922479..1923720	+	413	86158102	-	Adeh_1677	-	arsenical pump membrane protein
1673	 74.43	0	1923845..1924501	+	218	86158103	-	Adeh_1678	-	sigma-24 (FecI-like)
1674	 78.28	0	1924498..1925031	+	177	86158104	-	Adeh_1679	-	hypothetical protein
1675	 76.02	0	1925043..1926806	+	587	86158105	-	Adeh_1680	-	hypothetical protein
1676	 85.50	+2	1926803..1928836	-	677	86158106	-	Adeh_1681	-	PE-PGRS family protein
1677	 78.62	0	1928895..1929881	-	328	86158107	-	Adeh_1682	-	ribosomal large subunit pseudouridine synthase B
1678	 76.03	0	1929885..1931048	-	387	86158108	-	Adeh_1683	-	condensin subunit ScpB
1679	 72.63	0	1931045..1931950	-	301	86158109	-	Adeh_1684	-	condensin subunit ScpA
1680	 67.37	-1	1931979..1932974	-	331	86158110	-	Adeh_1685	-	tryptophanyl-tRNA synthetase
1681	 70.10	0	1932992..1933660	-	222	86158111	-	Adeh_1686	-	peptidase M50
1682	 75.03	0	1933810..1934754	-	314	86158112	-	Adeh_1687	-	tyrosine recombinase XerD subunit
1683	 72.13	0	1934763..1935458	-	231	86158113	-	Adeh_1688	-	translation factor SUA5
1684	 72.31	0	1935501..1935695	-	64	86158114	-	Adeh_1689	-	hypothetical protein
1685	 68.18	-1	1935720..1936115	-	131	86158115	-	Adeh_1690	-	hypothetical protein
1686	 76.08	0	1936108..1937052	-	314	86158116	-	Adeh_1691	-	SSU ribosomal protein S6P modification protein
1687	 75.15	0	1937275..1940067	-	930	86158117	-	Adeh_1692	-	metal dependent phosphohydrolase
1688	 78.01	0	1940113..1941981	-	622	86158118	-	Adeh_1693	-	glycyl aminopeptidase
1689	 79.26	+1	1942082..1943908	-	608	86158119	-	Adeh_1694	-	N-acetylmuramoyl-L-alanine amidase
1690	 73.57	0	1944063..1944728	+	221	86158120	-	Adeh_1695	-	isoprenoid biosynthesis protein
1691	 69.44	-1	1944895..1945182	+	95	86158121	-	Adeh_1696	-	cytochrome c3
1692	 68.10	-1	1945403..1945681	+	92	86158122	-	Adeh_1697	-	cytochrome c, class III
1693	 75.61	0	1945761..1948409	-	882	86158123	-	Adeh_1698	-	DNA mismatch repair protein MutS
1694	 72.40	0	1948492..1950165	+	557	86158124	-	Adeh_1699	-	2-octaprenylphenol hydroxylase
1695	 83.55	+1	1950181..1951086	-	301	86158125	-	Adeh_1700	-	hypothetical protein
1696	 69.57	-1	1951204..1951893	+	229	86158126	-	Adeh_1701	-	SOS-response transcriptional repressor, LexA
1697	 77.49	0	1952047..1952277	+	76	86158127	-	Adeh_1702	-	hypothetical protein
1698	 79.47	+1	1952350..1953771	-	473	86158128	-	Adeh_1703	-	hypothetical protein
1699	 75.30	0	1953775..1954677	-	300	86158129	-	Adeh_1704	-	hypothetical protein
1700	 76.83	0	1954682..1955488	-	268	86158130	-	Adeh_1705	-	metallophosphoesterase
1701	 81.40	+1	1955520..1956761	+	413	86158131	-	Adeh_1706	-	hypothetical protein
1702	 68.88	-1	1957114..1959645	+	843	86158132	-	Adeh_1707	-	ATP-dependent protease La
1703	 79.98	+1	1959673..1960776	+	367	86158133	-	Adeh_1708	-	NAD-dependent epimerase/dehydratase
1704	 79.17	+1	1960998..1962788	+	596	86158134	-	Adeh_1709	-	serine/threonine protein kinase
1705	 72.28	0	1962785..1963639	+	284	86158135	-	Adeh_1710	-	TPR repeat-containing protein
1706	 71.32	0	1963646..1965472	+	608	86158136	-	Adeh_1711	-	NifA subfamily transcriptional regulator
1707	 74.43	0	1965469..1966035	+	188	86158137	-	Adeh_1712	-	hypothetical protein
1708	 78.46	0	1966032..1966565	-	177	86158138	-	Adeh_1713	-	hypothetical protein
1709	 71.25	0	1966648..1966974	-	108	86158139	-	Adeh_1714	-	hypothetical protein
1710	 78.11	0	1967285..1969111	-	608	86158140	-	Adeh_1715	-	DNA mismatch repair protein MutL
1711	 79.25	+1	1969647..1970504	+	285	86158141	-	Adeh_1716	-	phospholipid/glycerol acyltransferase
1712	 73.96	0	1970515..1971378	-	287	86158142	-	Adeh_1717	-	Delta-9 acyl-phospholipid desaturase
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.