IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1551	 75.86	0	1783543..1784445	-	300	86157981	-	Adeh_1556	-	response regulator receiver modulated diguanylate cyclase
1552	 73.61	0	1785120..1785335	+	71	86157982	-	Adeh_1557	-	glutaredoxin
1553	 69.70	-1	1785424..1786149	-	241	86157983	-	Adeh_1558	-	hypothetical protein
1554	 80.55	+1	1786775..1788121	+	448	86157984	-	Adeh_1559	-	extracellular solute-binding protein
1555	 79.64	+1	1788118..1789689	+	523	86157985	-	Adeh_1560	-	histidine kinase
1556	 76.83	0	1789744..1790058	-	104	86157986	-	Adeh_1561	-	hypothetical protein
1557	 85.26	+2	1790099..1791679	-	526	86157987	-	Adeh_1562	-	Fis family transcriptional regulator
1558	 79.07	0	1791727..1792371	+	214	86157988	-	Adeh_1563	-	HEAT repeat-containing protein
1559	 74.01	0	1792470..1792973	+	167	86157989	-	Adeh_1564	-	ferric uptake regulator family protein
1560	 71.26	0	1792970..1795036	+	688	86157990	-	Adeh_1565	-	small GTP-binding protein domain-containing protein
1561	 73.75	0	1795261..1795938	+	225	86157991	-	Adeh_1566	-	Iron (metal) dependent repressor
1562	 74.40	0	1796002..1797345	+	447	86157992	-	Adeh_1567	-	hypothetical protein
1563	 76.94	0	1797354..1797908	+	184	86157993	-	Adeh_1568	-	hypothetical protein
1564	 79.25	+1	1797905..1798381	+	158	86157994	-	Adeh_1569	-	hypothetical protein
1565	 78.52	0	1798374..1798913	+	179	86157995	-	Adeh_1570	-	hypothetical protein
1566	 79.72	+1	1798922..1799917	-	331	86157996	-	Adeh_1571	-	ApbE-like lipoprotein
1567	 79.80	+1	1800068..1800676	+	202	86157997	-	Adeh_1572	-	TetR family transcriptional regulator
1568	 70.75	0	1800673..1802262	+	529	86157998	-	Adeh_1573	-	EmrB/QacA family drug resistance transporter
1569	 78.13	0	1802265..1803311	+	348	86157999	-	Adeh_1574	-	secretion protein HlyD
1570	 77.33	0	1803445..1803744	+	99	86158000	-	Adeh_1575	-	cell division protein FtsB
1571	 75.73	0	1803741..1806035	+	764	86158001	-	Adeh_1576	-	diguanylate cyclase
1572	 67.35	-1	1806136..1807458	+	440	86158002	-	Adeh_1577	-	PhoH-like protein
1573	 73.26	0	1807955..1808242	+	95	86158003	-	Adeh_1578	-	hypothetical protein
1574	 75.28	0	1808250..1809329	-	359	86158004	-	Adeh_1579	-	diacylglycerol kinase
1575	 67.67	-1	1809609..1811507	+	632	86158005	-	Adeh_1580	-	chaperone DnaK
1576	 74.84	0	1811655..1812596	+	313	86158006	-	Adeh_1581	-	S6 modification enzyme RimK
1577	 73.24	0	1812639..1813064	+	141	86158007	-	Adeh_1582	-	hypothetical protein
1578	 76.65	0	1813070..1813840	+	256	86158008	-	Adeh_1583	-	RNA methyltransferase TrmH, group 3
1579	 67.84	-1	1814447..1815637	+	396	86158009	-	Adeh_1584	-	elongation factor Tu
1580	 57.23	-2	1815653..1815811	+	52	86158010	-	Adeh_1585	-	50S ribosomal protein L33P
1581	 68.19	-1	1815963..1816355	+	130	86158011	-	Adeh_1586	-	protein translocase subunit secE/sec61 gamma
1582	 63.52	-2	1816466..1817005	+	179	86158012	-	Adeh_1587	-	transcription antitermination protein nusG
1583	 66.44	-1	1817093..1817539	+	148	86158013	rplK	Adeh_1588	-	50S ribosomal protein L11
1584	 66.67	-1	1817556..1818260	+	234	86158014	rplA	Adeh_1589	-	50S ribosomal protein L1
1585	 67.43	-1	1818531..1819055	+	174	86158015	-	Adeh_1590	-	50S ribosomal protein L10P
1586	 68.53	-1	1819148..1819522	+	124	86158016	-	Adeh_1591	-	50S ribosomal protein L12P
1587	 66.71	-1	1819746..1824014	+	1422	86158017	rpoB	Adeh_1592	-	DNA-directed RNA polymerase subunit beta
1588	 67.55	-1	1824115..1828299	+	1394	86158018	-	Adeh_1593	-	DNA-directed RNA polymerase, subunit beta-prime
1589	 70.80	0	1828729..1829454	+	241	86158019	-	Adeh_1594	-	sigma 32 (RpoH)
1590	 83.75	+2	1829639..1830241	+	200	86158020	-	Adeh_1595	-	flagellar assembly protein FliH, putative
1591	 80.58	+1	1830238..1831545	+	435	86158021	-	Adeh_1596	-	ATPase FliI/YscN
1592	 87.29	+2	1831542..1832021	+	159	86158022	-	Adeh_1597	-	mucin-associated surface protein (MASP), putative
1593	 77.41	0	1832045..1832407	-	120	86158023	-	Adeh_1598	-	response regulator receiver domain-containing protein
1594	 74.47	0	1832413..1832886	-	157	86158024	-	Adeh_1599	-	hypothetical protein
1595	 72.68	0	1832951..1833715	-	254	86158025	-	Adeh_1600	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1596	 81.24	+1	1833813..1834745	+	310	86158026	-	Adeh_1601	-	indigoidine synthase A like protein
1597	 75.37	0	1834813..1835697	+	294	86158027	-	Adeh_1602	-	3'-5' exonuclease
1598	 81.87	+1	1835694..1838186	-	830	86158028	-	Adeh_1603	-	lytic transglycosylase
1599	 82.28	+1	1838405..1840063	-	552	86158029	-	Adeh_1604	-	Allergen V5/Tpx-1 related
1600	 78.11	0	1840069..1840365	-	98	86158030	-	Adeh_1605	-	hypothetical protein
1601	 73.94	0	1840482..1841855	+	457	86158031	-	Adeh_1606	-	periplasmic sensor signal transduction histidine kinase
1602	 73.12	0	1841852..1842409	+	185	86158032	-	Adeh_1607	-	two component Fis family transcriptional regulator
1603	 69.70	-1	1842556..1842951	+	131	86158033	-	Adeh_1608	-	thioredoxin
1604	 72.43	0	1843032..1843829	-	265	86158034	-	Adeh_1609	-	hypothetical protein
1605	 81.94	+1	1844092..1844772	+	226	86158035	-	Adeh_1610	-	hypothetical protein
1606	 81.46	+1	1844762..1846417	+	551	86158036	-	Adeh_1611	-	hypothetical protein
1607	 76.88	0	1846433..1849831	+	1132	86158037	-	Adeh_1612	-	DNA polymerase III, alpha subunit
1608	 68.75	-1	1850042..1852819	-	925	86158038	-	Adeh_1613	-	vitamin B12-dependent ribonucleotide reductase
1609	 67.33	-1	1853300..1855105	+	601	86158039	-	Adeh_1614	-	GTP-binding protein LepA
1610	 76.76	0	1855113..1856132	+	339	86158040	-	Adeh_1615	-	signal peptidase I
1611	 71.94	0	1856151..1856624	+	157	86158041	-	Adeh_1616	-	hypothetical protein
1612	 76.16	0	1856635..1857171	+	178	86158042	-	Adeh_1617	-	phosphoribosyltransferase
1613	 70.91	0	1857168..1858109	+	313	86158043	-	Adeh_1618	-	aspartate carbamoyltransferase catalytic subunit
1614	 75.42	0	1858140..1859441	+	433	86158044	-	Adeh_1619	-	dihydroorotase
1615	 72.64	0	1859438..1860559	+	373	86158045	-	Adeh_1620	-	carbamoyl phosphate synthase small subunit
1616	 72.36	0	1860556..1861257	+	233	86158046	-	Adeh_1621	-	hypothetical protein
1617	 78.58	0	1861270..1861806	-	178	86158047	-	Adeh_1622	-	hypothetical protein
1618	 75.84	0	1861955..1863088	+	377	86158048	-	Adeh_1623	-	PAS/PAC sensor signal transduction histidine kinase
1619	 78.37	0	1863154..1863828	+	224	86158049	-	Adeh_1624	-	YdjC-like protein
1620	 69.10	-1	1863974..1865287	+	437	86158050	-	Adeh_1625	-	isocitrate dehydrogenase (NADP)
1621	 69.65	-1	1865319..1866257	+	312	86158051	-	Adeh_1626	-	malate dehydrogenase (NAD)
1622	 70.09	0	1866335..1867501	+	388	86158052	-	Adeh_1627	-	succinyl-CoA synthetase (ADP-forming) beta subunit
1623	 73.49	0	1867544..1868569	+	341	86158053	-	Adeh_1628	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
1624	 64.86	-2	1868674..1869117	+	147	86158054	-	Adeh_1629	-	nucleoside diphosphate kinase
1625	 73.69	0	1869259..1870653	+	464	86158055	-	Adeh_1630	-	hypothetical protein
1626	 73.64	0	1870666..1871784	+	372	86158056	-	Adeh_1631	-	hypothetical protein
1627	 71.64	0	1871832..1872776	+	314	86158057	-	Adeh_1632	-	carbohydrate kinase, PfkB
1628	 69.80	-1	1872826..1873560	+	244	86158058	-	Adeh_1633	-	bis(5'nucleosyl)-tetraphosphatase, ApaH
1629	 83.45	+1	1873582..1875816	-	744	86158059	-	Adeh_1634	-	WD-40 repeat-containing protein
1630	 80.69	+1	1875955..1877886	+	643	86158060	-	Adeh_1635	-	hypothetical protein
1631	 82.04	+1	1877903..1878793	+	296	86158061	-	Adeh_1636	-	HEAT repeat-containing PBS lyase
1632	 76.87	0	1878848..1879435	+	195	86158062	-	Adeh_1637	-	hypothetical protein
1633	 74.59	0	1879435..1880760	+	441	86158063	-	Adeh_1638	-	homoserine dehydrogenase
1634	 72.34	0	1880827..1881249	+	140	86158064	-	Adeh_1639	-	4-hydroxybenzoyl-CoA thioesterase
1635	 73.60	0	1881253..1882218	+	321	86158065	glpX	Adeh_1640	-	fructose 1,6-bisphosphatase II
1636	 68.24	-1	1882235..1882678	+	147	86158066	-	Adeh_1641	-	cyclase/dehydrase
1637	 71.24	0	1883342..1884631	+	429	86158067	-	Adeh_1642	-	enolase
1638	 71.05	0	1884830..1886221	+	463	86158068	-	Adeh_1643	-	thiamine biosynthesis protein ThiC
1639	 76.08	0	1886789..1887733	+	314	86158069	-	Adeh_1644	-	hydroxymethylglutaryl-CoA lyase
1640	 77.13	0	1887735..1888508	+	257	86158070	-	Adeh_1645	-	short chain enoyl-CoA hydratase
1641	 72.83	0	1888555..1890129	+	524	86158071	-	Adeh_1646	-	propionyl-CoA carboxylase
1642	 73.60	0	1890138..1891277	+	379	86158072	-	Adeh_1647	-	butyryl-CoA dehydrogenase
1643	 74.73	0	1891344..1892657	+	437	86158073	-	Adeh_1648	-	hypothetical protein
1644	 76.04	0	1892657..1893691	+	344	86158074	-	Adeh_1649	-	LAO/AO transport system ATPase
1645	 79.88	+1	1893707..1894864	+	385	86158075	-	Adeh_1650	-	ribonuclease III
1646	 71.73	0	1894941..1895612	+	223	86158076	-	Adeh_1651	-	peptidylprolyl isomerase
1647	 67.46	-1	1895672..1896178	+	168	86158077	-	Adeh_1652	-	peptidylprolyl isomerase
1648	 71.70	0	1896256..1897188	+	310	86158078	-	Adeh_1653	-	small GTP-binding protein Era
1649	 73.10	0	1897185..1898582	+	465	86158079	-	Adeh_1654	-	small GTP-binding protein
1650	 75.68	0	1898695..1899426	+	243	86158080	-	Adeh_1655	-	hypothetical protein
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.