IslandPathversion 1.0

IslandPath Analysis: Anaeromyxobacter dehalogenans 2CP-C



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 74.55 STD DEV: 4.53
Anaeromyxobacter dehalogenans 2CP-C, complete genome - 1..5013479
4346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1045	 80.10	+1	1204025..1205170	-	381	86157475	-	Adeh_1048	-	aminotransferase, class V
1046	 71.45	0	1205205..1206311	-	368	86157476	-	Adeh_1049	-	phosphoesterase, RecJ-like
1047	 71.98	0	1206326..1207153	-	275	86157477	-	Adeh_1050	-	endonuclease IV
1048	 68.50	-1	1207356..1208120	-	254	86157478	-	Adeh_1051	-	filamentation induced by cAMP protein Fic
1049	 70.38	0	1208440..1209354	-	304	86157479	-	Adeh_1052	-	branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase
1050	 75.45	0	1209457..1210902	-	481	86157480	-	Adeh_1053	-	patatin
1051	 76.06	0	1210978..1214022	-	1014	86157481	-	Adeh_1054	-	glutamate-ammonia-ligase adenylyltransferase
1052	 72.68	0	1214551..1215996	-	481	86157482	-	Adeh_1055	-	two component, sigma54 specific, Fis family transcriptional regulator
1053	 72.88	0	1216067..1218205	-	712	86157483	-	Adeh_1056	-	glycogen debranching enzyme GlgX
1054	 72.98	0	1218294..1219607	-	437	86157484	-	Adeh_1057	-	UDP-glucose 6-dehydrogenase
1055	 78.33	0	1219624..1220772	-	382	86157485	-	Adeh_1058	-	hypothetical protein
1056	 77.84	0	1220769..1221896	-	375	86157486	-	Adeh_1059	-	hypothetical protein
1057	 75.07	0	1222135..1223253	+	372	86157487	-	Adeh_1060	-	NAD-dependent epimerase/dehydratase
1058	 75.17	0	1223250..1224308	+	352	86157488	-	Adeh_1061	-	NAD-dependent epimerase/dehydratase
1059	 78.12	0	1224309..1225268	+	319	86157489	-	Adeh_1062	-	zinc-binding alcohol dehydrogenase
1060	 77.42	0	1225265..1226278	+	337	86157490	-	Adeh_1063	-	oxidoreductase-like protein
1061	 81.57	+1	1226285..1227418	+	377	86157491	-	Adeh_1064	-	glycosyl transferase, group 1
1062	 77.16	0	1227415..1228500	+	361	86157492	-	Adeh_1065	-	hypothetical protein
1063	 75.19	0	1228497..1229576	+	359	86157493	-	Adeh_1066	-	hypothetical protein
1064	 73.95	0	1229661..1231472	+	603	86157494	-	Adeh_1067	-	ABC transporter, fused ATPase and inner membrane subunits
1065	 72.00	0	1231600..1232424	-	274	86157495	-	Adeh_1068	-	Beta-lactamase-like
1066	 70.99	0	1232798..1233700	+	300	86157496	-	Adeh_1069	-	RNA polymerase, sigma 32 subunit, RpoH
1067	 74.64	0	1233774..1234538	-	254	86157497	-	Adeh_1070	-	short-chain dehydrogenase/reductase SDR
1068	 75.75	0	1234549..1236045	-	498	86157498	-	Adeh_1071	-	periplasmic sensor signal transduction histidine kinase
1069	 78.79	0	1236123..1236815	-	230	86157499	-	Adeh_1072	-	hypothetical protein
1070	 75.71	0	1236812..1238227	-	471	86157500	-	Adeh_1073	-	surface antigen (D15)
1071	 79.56	+1	1238320..1240281	-	653	86157501	-	Adeh_1074	-	serine/threonine protein kinase
1072	 81.10	+1	1240449..1241792	+	447	86157502	-	Adeh_1075	-	hypothetical protein
1073	 70.68	0	1241793..1243388	+	531	86157503	-	Adeh_1076	-	glycoside hydrolase family protein
1074	 74.47	0	1243523..1244611	+	362	86157504	-	Adeh_1077	-	hypothetical protein
1075	 72.31	0	1244807..1246348	+	513	86157505	-	Adeh_1078	-	lysyl-tRNA synthetase
1076	 74.09	0	1246351..1248318	+	655	86157506	-	Adeh_1079	-	hypothetical protein
1077	 73.30	0	1248362..1248934	-	190	86157507	-	Adeh_1080	-	hypothetical protein
1078	 66.42	-1	1249058..1251478	+	806	86157508	-	Adeh_1081	-	surface antigen (D15)
1079	 67.36	-1	1251497..1252075	+	192	86157509	-	Adeh_1082	-	outer membrane chaperone Skp (OmpH)
1080	 73.43	0	1252084..1253148	+	354	86157510	-	Adeh_1083	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1081	 70.49	0	1253145..1253615	+	156	86157511	-	Adeh_1084	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1082	 71.83	0	1253641..1254414	+	257	86157512	-	Adeh_1085	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1083	 74.60	0	1254417..1255223	+	268	86157513	-	Adeh_1086	-	hypothetical protein
1084	 80.56	+1	1255223..1255510	+	95	86157514	-	Adeh_1087	-	hypothetical protein
1085	 71.70	0	1255644..1256696	+	350	86157515	-	Adeh_1088	-	uroporphyrinogen decarboxylase
1086	 69.43	-1	1256707..1258083	+	458	86157516	-	Adeh_1089	-	coproporphyrinogen III oxidase
1087	 73.62	0	1258119..1259081	+	320	86157517	-	Adeh_1090	-	ferrochelatase
1088	 78.70	0	1259333..1261102	-	589	86157518	-	Adeh_1091	-	heat shock protein DnaJ-like
1089	 77.19	0	1261307..1262095	+	262	86157519	-	Adeh_1092	-	trehalose-phosphatase
1090	 78.39	0	1262287..1263711	+	474	86157520	-	Adeh_1093	-	exodeoxyribonuclease VII large subunit
1091	 74.47	0	1263734..1264015	+	93	86157521	-	Adeh_1094	-	exodeoxyribonuclease VII small subunit
1092	 68.82	-1	1264020..1264436	+	138	86157522	-	Adeh_1095	-	response regulator receiver domain-containing protein
1093	 77.89	0	1264514..1265395	+	293	86157523	-	Adeh_1096	-	farnesyl-diphosphate synthase
1094	 72.37	0	1265414..1267324	+	636	86157524	-	Adeh_1097	-	1-deoxy-D-xylulose-5-phosphate synthase
1095	 75.57	0	1267492..1268232	+	246	86157525	-	Adeh_1098	-	hemolysin A
1096	 71.71	0	1268456..1268971	+	171	86157526	-	Adeh_1099	-	hypothetical protein
1097	 69.47	-1	1268975..1270648	+	557	86157527	-	Adeh_1100	-	NusA antitermination factor
1098	 72.73	0	1270645..1270908	+	87	86157528	-	Adeh_1101	-	hypothetical protein
1099	 72.52	0	1270920..1273772	+	950	86157529	-	Adeh_1102	-	translation initiation factor 2
1100	 71.71	0	1273891..1274346	+	151	86157530	-	Adeh_1103	-	hypothetical protein
1101	 74.58	0	1274343..1274759	+	138	86157531	-	Adeh_1104	-	ribosome-binding factor A
1102	 80.15	+1	1274767..1275708	+	313	86157532	-	Adeh_1105	-	tRNA pseudouridine synthase B
1103	 64.44	-2	1275818..1276087	+	89	86157533	-	Adeh_1106	-	SSU ribosomal protein S15P
1104	 69.56	-1	1276277..1278526	+	749	86157534	-	Adeh_1107	-	polynucleotide phosphorylase/polyadenylase
1105	 77.25	0	1278552..1278995	+	147	86157535	-	Adeh_1108	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1106	 71.89	0	1279011..1280330	+	439	86157536	-	Adeh_1109	-	adenylosuccinate lyase
1107	 82.67	+1	1280357..1280887	+	176	86157537	-	Adeh_1110	-	hypothetical protein
1108	 78.38	0	1280903..1282294	-	463	86157538	-	Adeh_1111	-	GAF sensor signal transduction histidine kinase
1109	 69.06	-1	1282819..1283778	-	319	86157539	-	Adeh_1112	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1110	 78.02	0	1283808..1284617	+	269	86157540	-	Adeh_1113	-	tRNA/rRNA methyltransferase, SpoU
1111	 66.67	-1	1284614..1284910	-	98	86157541	-	Adeh_1114	-	hypothetical protein
1112	 74.63	0	1284978..1285982	-	334	86157542	-	Adeh_1115	-	peptidase S1 and S6, chymotrypsin/Hap
1113	 80.46	+1	1286364..1286798	-	144	86157543	-	Adeh_1116	-	hypothetical protein
1114	 78.41	0	1286786..1287415	-	209	86157544	-	Adeh_1117	-	phosphoglycolate phosphatase
1115	 77.36	0	1287446..1288399	-	317	86157545	-	Adeh_1118	-	metal dependent phosphohydrolase
1116	 77.51	0	1288396..1288773	-	125	86157546	-	Adeh_1119	-	response regulator receiver domain-containing protein
1117	 77.06	0	1288752..1289405	-	217	86157547	-	Adeh_1120	-	molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD
1118	 75.95	0	1289437..1290492	-	351	86157548	-	Adeh_1121	-	peptidase M50, putative membrane-associated zinc metallopeptidase
1119	 77.66	0	1290489..1291043	-	184	86157549	-	Adeh_1122	-	AMMECR1
1120	 78.49	0	1291040..1291462	-	140	86157550	-	Adeh_1123	-	NUDIX hydrolase
1121	 80.13	+1	1291533..1292906	-	457	86157551	-	Adeh_1124	-	hypothetical protein
1122	 74.22	0	1293301..1293843	+	180	86157552	-	Adeh_1125	-	carbonic anhydrase
1123	 70.94	0	1294283..1297183	-	966	86157553	-	Adeh_1127	-	excinuclease ABC subunit A
1124	 76.65	0	1297288..1298289	+	333	86157554	-	Adeh_1128	-	hypothetical protein
1125	 76.96	0	1298286..1299218	+	310	86157555	-	Adeh_1129	-	hypothetical protein
1126	 79.88	+1	1299219..1301465	-	748	86157556	-	Adeh_1130	-	multi-sensor signal transduction histidine kinase
1127	 72.79	0	1302021..1302575	+	184	86157557	-	Adeh_1131	-	putative lipoprotein transmembrane
1128	 73.92	0	1302586..1303743	+	385	86157558	-	Adeh_1132	-	Acyl-CoA dehydrogenase, type 1
1129	 76.10	0	1303772..1304089	+	105	86157559	-	Adeh_1133	-	CutA1 divalent ion tolerance protein
1130	 74.20	0	1304093..1304437	-	114	86157560	-	Adeh_1134	-	hypothetical protein
1131	 78.44	0	1304472..1306034	+	520	86157561	-	Adeh_1135	-	serine/threonine protein kinase
1132	 72.02	0	1306039..1307214	-	391	86157562	-	Adeh_1136	-	response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
1133	 70.22	0	1307476..1308657	-	393	86157563	-	Adeh_1137	-	transcription termination factor Rho
1134	 78.72	0	1309185..1311689	-	834	86157564	-	Adeh_1138	-	signal peptide peptidase A
1135	 68.67	-1	1311786..1312634	-	282	86157565	-	Adeh_1139	-	thymidylate synthase (FAD)
1136	 74.58	0	1312694..1313173	+	159	86157566	-	Adeh_1140	-	thioesterase superfamily protein
1137	 74.19	0	1313269..1315329	+	686	86157567	-	Adeh_1141	-	PgPepO oligopeptidase
1138	 77.59	0	1315330..1315860	-	176	86157568	-	Adeh_1142	-	FHA domain-containing protein
1139	 75.01	0	1315914..1317614	-	566	86157569	-	Adeh_1143	-	aldehyde dehydrogenase
1140	 75.62	0	1317714..1318562	-	282	86157570	-	Adeh_1144	-	metallophosphoesterase
1141	 77.15	0	1318724..1319629	-	301	86157571	-	Adeh_1145	-	hypothetical protein
1142	 73.75	0	1319705..1320226	+	173	86157572	-	Adeh_1146	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1143	 69.05	-1	1320293..1320502	-	69	86157573	-	Adeh_1147	-	XRE family transcriptional regulator
1144	 66.98	-1	1320831..1321148	+	105	86157574	-	Adeh_1148	-	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
74.55	MEAN

4.53	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.