version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 43 36.74 0 50752..51015 - 87 209693677 - VSAL_I0047 - hypothetical protein 44 38.04 0 51533..52318 + 261 209693678 - VSAL_I0048 - putative sporulation-control protein 45 36.11 -1 52420..53067 + 215 209693679 hlyIII VSAL_I0049 - hemolysin III 46 40.62 0 53364..54557 - 397 209693680 - VSAL_I0050 - transposase 47 42.38 0 54711..54920 - 69 209693681 cspV VSAL_I0051 - cold shock protein 48 42.27 0 55198..56730 - 510 209693682 ilvA VSAL_I0052 - threonine dehydratase 49 44.87 +1 56735..58207 - 490 209693683 ilvD VSAL_I0053 - dihydroxy-acid dehydratase 50 40.56 0 58234..58482 - 82 209693684 ilvM VSAL_I0054 - putative acetolactate synthase small regulatory subunit 51 40.54 0 59847..61040 + 397 209693685 - VSAL_I0056 - transposase 52 32.77 -2 61632..62159 + 175 209693686 - VSAL_I0057 - hypothetical protein 53 39.35 0 62442..63239 + 265 209693687 - VSAL_I0058 - putative ParA chromosome partitioning protein 54 39.49 0 63236..64210 + 324 209693688 - VSAL_I0059 - putative chromosome partitioning protein ParB 55 41.98 0 64200..64604 + 134 209693689 - VSAL_I0060 - hypothetical protein 56 38.98 0 64789..65160 + 123 209693690 - VSAL_I0061 - hypothetical protein 57 34.85 -1 65851..66444 - 197 209693691 - VSAL_I0062 - hypothetical protein 58 37.82 0 69062..69418 + 118 209693692 - VSAL_I0065 - transposase 59 37.37 0 69494..69790 + 98 209693693 - VSAL_I0066 - transposase 60 36.21 -1 72716..73063 - 115 209693694 - VSAL_I0069 - transposase 61 37.78 0 73060..73374 - 104 209693695 - VSAL_I0070 - transposase 62 44.01 +1 74902..76278 - 458 209693696 trkA VSAL_I0072 - Trk system potassium uptake protein TrkA 63 43.00 +1 76303..77637 - 444 209693697 rsmB VSAL_I0073 - ribosomal RNA small subunit methyltransferase B 64 42.96 +1 77686..78651 - 321 209693698 fmt VSAL_I0074 - methionyl-tRNA formyltransferase 65 40.20 0 78654..79163 - 169 209693699 def VSAL_I0075 - peptide deformylase (polypeptide deformylase) 66 37.85 0 79281..80342 + 353 209693700 - VSAL_I0076 - putative cell wall degradation enzyme 67 43.24 +1 80351..81460 + 369 209693701 smf VSAL_I0077 - Smf protein 68 37.34 0 81463..81936 + 157 209693702 - VSAL_I0078 - hypothetical protein 69 38.60 0 81946..82515 + 189 209693703 yrdD VSAL_I0079 - DNA topoisomerase 70 38.78 0 82555..83673 - 372 209693704 purK VSAL_I0080 - phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 71 43.20 +1 83673..84209 - 178 209693705 purE VSAL_I0081 - phosphoribosylaminoimidazole carboxylase catalytic subunit 72 41.40 0 84360..84917 + 185 209693706 - VSAL_I0082 - hypothetical protein 73 38.81 0 84984..85805 + 273 209693707 aroE VSAL_I0083 - shikimate dehydrogenase 74 35.48 -1 85879..86064 + 61 209693708 - VSAL_I0084 - hypothetical protein 75 34.62 -1 86057..86602 - 181 209693709 - VSAL_I0085 - putative transferase 76 33.56 -1 114812..115696 - 294 209693710 ilvY VSAL_I0086 - HTH-type transcriptional regulator, LysR-family 77 39.06 0 115825..117309 + 494 209693711 ilvC VSAL_I0087 - ketol-acid reductoisomerase 78 33.33 -1 117397..117648 - 83 209693712 - VSAL_I0088 - hypothetical protein 79 40.89 0 117758..120826 - 1022 209693713 - VSAL_I0089 - putative integral membrane component of multidrug efflux system 80 39.30 0 120838..121944 - 368 209693714 - VSAL_I0090 - putative multidrug transporter, HlyD family 81 37.00 0 121963..122562 - 199 209693715 - VSAL_I0091 - HTH-type transcriptional regulator, TetR family 82 39.58 0 122717..124732 + 671 209693716 rep VSAL_I0092 - ATP-dependent DNA helicase rep 83 43.63 +1 124833..125240 - 135 209693717 - VSAL_I0093 - cytochrome c 84 41.76 0 128498..130051 + 517 209693718 - VSAL_I0095 - transport protein, extracellular solute-binding protein 85 40.29 0 130188..131165 + 325 209693719 - VSAL_I0096 - binding-protein-dependent transport system,inner membrane component 86 42.46 0 131168..132109 + 313 209693720 - VSAL_I0097 - binding-protein-dependent transport system,inner membrane component 87 43.26 +1 132347..133927 + 526 209693721 - VSAL_I0098 - transporter, BCCT family 88 40.03 0 134012..134728 - 238 209693722 - VSAL_I0099 - putative exonuclease 89 40.99 0 134738..136618 - 626 209693723 - VSAL_I0100 - putative cyclic nucleotide binding protein 90 41.18 0 136794..137672 + 292 209693724 - VSAL_I0101 - hypothetical protein 91 39.39 0 137656..137919 + 87 209693725 - VSAL_I0102 - hypothetical protein 92 38.81 0 137970..139940 - 656 209693726 - VSAL_I0103 - HTH-type transcriptional regulator 93 42.38 0 140087..140827 - 246 209693727 - VSAL_I0104 - hypothetical protein 94 42.60 +1 140840..141886 - 348 209693728 - VSAL_I0105 - hypothetical protein 95 40.72 0 141927..143063 - 378 209693729 - VSAL_I0106 - hypothetical protein 96 45.62 +1 143122..143772 - 216 209693730 - VSAL_I0107 - membrane protein 97 47.18 +2 143787..144566 - 259 209693731 - VSAL_I0108 - membrane protein 98 28.62 -2 144627..144923 - 98 209693732 - VSAL_I0109 - hypothetical protein 99 45.18 +1 144926..145288 - 120 209693733 - VSAL_I0110 - hypothetical protein 100 31.03 -2 145290..145637 - 115 209693734 - VSAL_I0111 - hypothetical protein 101 36.05 -1 145902..146783 + 293 209693735 - VSAL_I0112 - transposase 102 37.78 0 146904..147218 + 104 209693736 - VSAL_I0113 - transposase 103 36.21 -1 147215..147562 + 115 209693737 - VSAL_I0114 - transposase 104 39.72 0 147634..149121 + 495 209693738 - VSAL_I0115 - transposase 105 36.60 0 149312..151027 - 571 209693739 - VSAL_I0116 - hypothetical protein 106 33.16 -2 151287..151856 - 189 209693740 - VSAL_I0117 - putative RNA polymerase sigma factor 107 33.04 -2 151960..153300 - 446 209693741 - VSAL_I0118 - putative protein kinase 108 38.92 0 153609..154199 + 196 209693742 - VSAL_I0119 - hypothetical protein 109 43.36 +1 154286..155641 - 451 209693743 gor VSAL_I0120 - glutathione reductase 110 41.07 0 155854..156693 - 279 209693744 - VSAL_I0121 - hypothetical protein 111 43.42 +1 156846..158888 + 680 209693745 prlC VSAL_I0122 - oligopeptidase A 112 39.65 0 158962..160401 - 479 209693746 - VSAL_I0123 - putative exported peptidase 113 37.78 0 160523..160837 - 104 209693747 cyaY VSAL_I0124 - protein CyaY 114 42.82 +1 161114..162367 + 417 209693748 lysA VSAL_I0125 - diaminopimelate decarboxylase 115 42.60 +1 162449..163279 + 276 209693749 dapF VSAL_I0126 - diaminopimelate epimerase 116 39.46 0 163276..163977 + 233 209693750 - VSAL_I0127 - hypothetical protein 117 42.11 0 163970..164881 + 303 209693751 xerC VSAL_I0128 - tyrosine recombinase XerC 118 37.78 0 165050..165364 + 104 209693752 - VSAL_I0129 - transposase 119 40.47 0 165725..166915 - 396 209693753 - VSAL_I0131 - transposase 120 39.42 0 167270..167860 + 196 209693754 - VSAL_I0132 - putative lipoprotein 121 37.33 0 167877..169328 + 483 209693755 - VSAL_I0133 - hypothetical protein 122 39.92 0 169900..171447 + 515 209693756 - VSAL_I0134 - L-2,4-diaminobutyrate decarboxylase 123 39.73 0 171464..172792 + 442 209693757 iucD VSAL_I0135 - siderophore biosynthetis protein 124 39.67 0 172803..175262 + 819 209693758 iucC VSAL_I0136 - siderophore biosynthesis protein 125 40.58 0 175286..177451 + 721 209693759 - VSAL_I0137 - TonB-dependent iron-siderophore receptor precursor 126 43.32 +1 177570..178520 + 316 209693760 - VSAL_I0138 - iron-siderophore ABC transporter, periplasmic binding protein 127 43.42 +1 178517..179617 + 366 209693761 fepD VSAL_I0139 - iron-siderophore ABC transporter, membrane permease component 128 46.00 +2 179607..180632 + 341 209693762 fecD VSAL_I0140 - iron-siderophore ABC transporter, membrane permease component 129 43.00 +1 180647..181453 + 268 209693763 fepC VSAL_I0141 - iron-siderophore ABC transporter, ATP-binding protein 130 37.78 0 181578..181892 + 104 209693764 - VSAL_I0142 - transposase 131 36.21 -1 181889..182236 + 115 209693765 - VSAL_I0143 - transposase 132 39.72 0 182308..183795 + 495 209693766 - VSAL_I0144 - transposase 133 43.75 +1 185316..186620 - 434 209693767 rhlB VSAL_I0146 - ATP-dependent RNA helicase RhlB 134 40.67 0 186733..187059 + 108 209693768 trxA VSAL_I0147 - thioredoxin 1 135 41.83 0 187298..188557 + 419 209693769 rho VSAL_I0148 - transcription termination factor rho 136 41.74 0 188701..189723 + 340 209693770 - VSAL_I0149 - hypothetical protein 137 42.56 +1 189820..191661 + 613 209693771 ubiD VSAL_I0150 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 138 39.02 0 191658..191921 + 87 209693772 - VSAL_I0151 - putative ferredoxin 139 43.46 +1 192020..192730 + 236 209693773 fre VSAL_I0152 - NAD(P)H-flavin reductase 140 37.78 0 194735..195049 - 104 209693774 - VSAL_I0155 - transposase 141 38.69 0 195363..197342 - 659 209693775 - VSAL_I0157 - membrane associated sulfatase 142 41.51 0 197379..198197 - 272 209693776 mutM VSAL_I0158 - formamidopyrimidine-DNA glycosylase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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