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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 847 43.73 +1 1009618..1010319 - 233 209694481 - VSAL_I0910 - glycoprotease 848 42.02 0 1010327..1012282 - 651 209694482 - VSAL_I0911 - putative ATP-dependent helicase 849 37.53 0 1012702..1013535 + 277 209694483 purU VSAL_I0912 - formyltetrahydrofolate deformylase 850 36.09 -1 1013608..1014405 - 265 209694484 - VSAL_I0913 - putative hydrolytic enzyme 851 25.76 -2 1014523..1014720 - 65 209694485 - VSAL_I0914 - hypothetical protein 852 37.11 0 1014975..1015133 + 52 209694486 - VSAL_I0915 - membrane protein 853 35.94 -1 1015660..1016541 - 293 209694487 - VSAL_I0917 - transposase 854 37.00 0 1017599..1017925 - 108 209694488 - VSAL_I0919 - putative lipoprotein 855 37.61 0 1018025..1020013 - 662 209694489 - VSAL_I0920 - nitrate and nitrite sensing methyl-accepting chemotaxis protein 856 39.11 0 1020181..1020630 + 149 209694490 ribx VSAL_I0921 - putative rib operon regulator RibX 857 42.34 0 1020632..1021753 + 373 209694491 ribD VSAL_I0922 - pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) 858 39.42 0 1021757..1022413 + 218 209694492 ribC VSAL_I0923 - riboflavin synthase alpha chain 859 41.80 0 1022450..1023559 + 369 209694493 ribBA VSAL_I0924 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP cyclohydrolase II) (riboflavin biosynthesis protein RibBA) 860 41.61 0 1023709..1024179 + 156 209694494 ribH VSAL_I0925 - 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain) 861 39.10 0 1024179..1024646 + 155 209694495 nusB VSAL_I0926 - N utilization substance protein B (protein NusB) 862 37.46 0 1024736..1025728 + 330 209694496 thiL VSAL_I0927 - thiamine-monophosphate kinase 863 36.71 0 1025731..1026234 + 167 209694497 pgpA VSAL_I0928 - phosphatidylglycerophosphatase A 864 32.57 -2 1027355..1029592 + 745 209694498 luxQ VSAL_I0930 - autoinducer 2 sensor kinase/phosphatase LuxQ 865 36.96 0 1029589..1029864 - 91 209694499 - VSAL_I0931 - hypothetical protein 866 37.04 0 1029953..1030303 + 116 209694500 - VSAL_I0932 - antibiotic biosynthesis monooxygenase 867 41.19 0 1030373..1032256 - 627 209694501 dxs VSAL_I0933 - 1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose 5-phosphate synthase) 868 40.36 0 1032279..1033175 - 298 209694502 ispA VSAL_I0934 - geranyltranstransferase 869 41.15 0 1033168..1033410 - 80 209694503 xseB VSAL_I0935 - exodeoxyribonuclease VII small subunit 870 38.56 0 1033690..1034454 + 254 209694504 motA VSAL_I0936 - sodium-driven polar flagellar protein MotA 871 42.69 +1 1034469..1035398 + 309 209694505 motB VSAL_I0937 - sodium-driven polar flagellar protein MotB 872 38.51 0 1035565..1037013 + 482 209694506 thiI VSAL_I0938 - thiamine biosynthesis protein ThiI 873 37.04 0 1037075..1037992 - 305 209694507 - VSAL_I0939 - transcriptional regulator, LysR family 874 33.76 -1 1038067..1039011 + 314 209694508 - VSAL_I0940 - integral membrane protein 875 41.62 0 1039081..1039671 - 196 209694509 thiJ VSAL_I0941 - protein ThiJ 876 38.11 0 1039668..1040567 - 299 209694510 panE VSAL_I0942 - 2-dehydropantoate 2-reductase 877 39.36 0 1041789..1043132 - 447 209694511 - VSAL_I0944 - MSF transporter 878 39.78 0 1043240..1043797 - 185 209694512 rotA VSAL_I0945 - peptidyl-prolyl cis-trans isomerase precursor 879 39.82 0 1043800..1044369 - 189 209694513 - VSAL_I0946 - putative lipoprotein 880 38.03 0 1044383..1045531 - 382 209694514 - VSAL_I0947 - putative methyltransferase 881 37.46 0 1045625..1045939 + 104 209694515 bolA VSAL_I0948 - BolA protein 882 41.54 0 1046336..1047676 + 446 209694516 nqrA VSAL_I0949 - Na(+)-translocating NADH-ubiquinone reductase subunit A 883 43.45 +1 1047680..1048924 + 414 209694517 nqrB VSAL_I0950 - Na(+)-translocating NADH-quinone reductase subunit B 884 39.56 0 1048914..1049684 + 256 209694518 nqrC VSAL_I0951 - Na+-translocating NADH-quinone reductase subunit C 885 35.40 -1 1049684..1050313 + 209 209694519 nqrD VSAL_I0952 - Na+-translocating NADH-quinone reductase subunit D 886 38.69 0 1050321..1050917 + 198 209694520 nqrE VSAL_I0953 - Na+-translocating NADH-quinone reductase subunit E 887 39.77 0 1050947..1052173 + 408 209694521 nqrF VSAL_I0954 - NADH-uniquinone oxidoreductase subunit F 888 37.48 0 1052339..1053376 + 345 209694522 - VSAL_I0955 - thiamine biosynthesis lipoprotein ApbE precursor 889 38.46 0 1053388..1053621 + 77 209694523 - VSAL_I0956 - hypothetical protein 890 39.02 0 1053775..1054689 + 304 209694524 dinB VSAL_I0957 - DNA polymerase IV 891 35.94 -1 1055612..1056493 + 293 209694525 - VSAL_I0959 - transposase 892 38.97 0 1057929..1058141 - 70 209694526 ahdIC VSAL_I0960 - DNA methyltransferase 893 36.31 -1 1058250..1058786 + 178 209694527 - VSAL_I0961 - hypothetical protein 894 37.04 0 1058783..1060183 + 466 209694528 - VSAL_I0962 - putative type III restriction enzyme 895 35.14 -1 1060435..1061100 - 221 209694529 - VSAL_I0963 - hypothetical protein 896 36.09 -1 1063619..1064671 - 350 209694530 dinB VSAL_I0965 - DNA polymerase IV 897 33.70 -1 1064843..1066204 - 453 209694531 - VSAL_I0966 - putative phage recombinase/integrase 898 33.52 -1 1066206..1066727 - 173 209694532 - VSAL_I0967 - hypothetical protein, putative phage gene 899 34.53 -1 1066728..1069151 - 807 209694533 - VSAL_I0968 - hypothetical protein, putative phage gene 900 34.66 -1 1069145..1071484 - 779 209694534 - VSAL_I0969 - hypothetical protein, putative phage gene 901 35.94 -1 1072345..1073226 - 293 209694535 - VSAL_I0972 - transposase 902 42.47 0 1074320..1075774 - 484 209694536 - VSAL_I0973 - aminoacyl-histidine dipeptidase 903 40.99 0 1076578..1077870 + 430 209694537 - VSAL_I0974 - membrane permease 904 40.52 0 1077908..1078366 + 152 209694538 gpt VSAL_I0975 - xanthine phosphoribosyltransferase (xanthine-guanin phosphoribosyltransferase) 905 39.94 0 1078525..1079766 + 413 209694539 - VSAL_I0976 - putative esterase 906 41.08 0 1079931..1081040 + 369 209694540 proB VSAL_I0977 - glutamate 5-kinase 907 41.79 0 1081071..1082312 + 413 209694541 proA VSAL_I0978 - gamma-glutamyl phosphate reductase 908 42.75 +1 1082414..1083379 - 321 209694542 lipA VSAL_I0979 - lipoyl synthase (lipoic acid synthase) 909 39.88 0 1083372..1084058 - 228 209694543 lipB VSAL_I0980 - lipoyltransferase (lipoate-protein ligase B) 910 40.00 0 1084196..1084465 - 89 209694544 - VSAL_I0981 - hypothetical protein 911 38.10 0 1084621..1085796 - 391 209694545 dacA VSAL_I0982 - penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A) 912 37.04 0 1086079..1086888 - 269 209694546 - VSAL_I0983 - rare lipoprotein A 913 41.00 0 1086892..1088013 - 373 209694547 mrdB VSAL_I0984 - rod shape-determining protein RodA 914 41.05 0 1088013..1089890 - 625 209694548 mrdA VSAL_I0985 - penicillin-binding protein 2 915 42.68 +1 1089894..1090364 - 156 209694549 - VSAL_I0986 - hypothetical protein 916 39.94 0 1090368..1090685 - 105 209694550 - VSAL_I0987 - hypothetical protein 917 36.99 0 1090734..1091771 - 345 209694551 holA VSAL_I0988 - DNA polymerase III, delta subunit 918 38.70 0 1091774..1092406 - 210 209694552 - VSAL_I0989 - rare lipoprotein B precursor 919 43.19 +1 1092574..1095150 - 858 209694553 leuS VSAL_I0990 - leucyl-tRNA synthetase 920 38.51 0 1095318..1095800 + 160 209694554 - VSAL_I0991 - hypothetical protein 921 40.70 0 1095871..1097376 - 501 209694555 lnt VSAL_I0992 - apolipoprotein N-acyltransferase 922 40.98 0 1097468..1098343 - 291 209694556 - VSAL_I0993 - hemolysin 923 37.88 0 1098413..1098874 - 153 209694557 - VSAL_I0994 - hypothetical protein 924 40.52 0 1098896..1099966 - 356 209694558 - VSAL_I0995 - PhoH-like protein 925 40.70 0 1100110..1101534 - 474 209694559 - VSAL_I0996 - hypothetical protein 926 37.91 0 1101750..1102907 + 385 209694560 ubiF VSAL_I0997 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 927 37.78 0 1103104..1103418 + 104 209694561 - VSAL_I0998 - transposase 928 36.21 -1 1103415..1103762 + 115 209694562 - VSAL_I0999 - transposase 929 40.54 0 1105138..1106331 - 397 209694563 - VSAL_I1001 - transposase 930 37.33 0 1107542..1108141 - 199 209694564 - VSAL_I1003 - putative HTH-type transcriptional regulator 931 42.27 0 1108316..1109266 + 316 209694565 - VSAL_I1004 - putative transport protein 932 39.39 0 1109413..1109643 + 76 209694566 - VSAL_I1005 - hypothetical protein 933 42.46 0 1109644..1109895 - 83 209694567 - VSAL_I1006 - hypothetical protein 934 41.54 0 1109923..1110495 + 190 209694568 - VSAL_I1007 - hypothetical protein 935 40.71 0 1110598..1111641 - 347 209694569 int VSAL_I1008 - phage integrase 936 31.31 -2 1111704..1112492 - 262 209694570 - VSAL_I1009 - probable exclusion protein 937 38.66 0 1112515..1113471 - 318 209694571 - VSAL_I1010 - probable phage regulatory protein CI 938 41.29 0 1113644..1113844 + 66 209694572 - VSAL_I1011 - probable phage regulatory protein 939 41.44 0 1113931..1114473 + 180 209694573 cII VSAL_I1012 - phage regulatory protein CII 940 38.89 0 1114483..1114806 + 107 209694574 - VSAL_I1013 - putative phage gene 941 38.10 0 1114874..1115356 + 160 209694575 - VSAL_I1014 - hypothetical protein, putative phage gene 942 42.54 0 1115353..1115754 + 133 209694576 - VSAL_I1015 - hypothetical protein, putative phage gene 943 41.86 0 1115754..1115882 + 42 209694577 - VSAL_I1016 - hypothetical protein, putative phage gene 944 35.53 -1 1115885..1116157 + 90 209694578 - VSAL_I1017 - hypothetical protein, putative phage gene 945 43.72 +1 1116160..1116390 + 76 209694579 - VSAL_I1018 - hypothetical protein, putative phage gene 946 33.89 -1 1116387..1116746 + 119 209694580 - VSAL_I1019 - hypothetical protein, putative phage gene 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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