IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
833	 42.49	0	992134..992832	+	232	209694467	-	VSAL_I0891	-	hypothetical protein
834	 45.28	+1	992979..994694	+	571	209694468	proS	VSAL_I0892	-	prolyl-tRNA synthetase
835	 36.31	-1	994766..995236	-	156	209694469	-	VSAL_I0893	-	hypothetical protein
836	 37.46	0	996870..997184	+	104	209694470	-	VSAL_I0895	-	transposase
837	 36.21	-1	997181..997528	+	115	209694471	-	VSAL_I0896	-	transposase
838	 38.23	0	999132..1000010	-	292	209694472	-	VSAL_I0898	-	HTH-type transcriptional regulator, rpiR family
839	 40.49	0	1000299..1001192	+	297	209694473	-	VSAL_I0899	-	dihydropicolinate synthase
840	 38.36	0	1001328..1001546	+	72	209694474	-	VSAL_I0900	-	hypothetical protein
841	 32.80	-2	1001546..1001734	+	62	209694475	-	VSAL_I0901	-	hypothetical protein
842	 37.78	0	1003914..1004228	+	104	209694476	-	VSAL_I0903	-	transposase
843	 35.92	-1	1004225..1004572	+	115	209694477	-	VSAL_I0904	-	transposase
844	 40.00	0	1007807..1008676	-	289	209694478	-	VSAL_I0907	-	putative hydrolase
845	 39.43	0	1008683..1009240	-	185	209694479	-	VSAL_I0908	-	outer membrane lipoprotein, Slp family
846	 41.00	0	1009256..1009555	-	99	209694480	-	VSAL_I0909	-	hypothetical protein
847	 43.73	+1	1009618..1010319	-	233	209694481	-	VSAL_I0910	-	glycoprotease
848	 42.02	0	1010327..1012282	-	651	209694482	-	VSAL_I0911	-	putative ATP-dependent helicase
849	 37.53	0	1012702..1013535	+	277	209694483	purU	VSAL_I0912	-	formyltetrahydrofolate deformylase
850	 36.09	-1	1013608..1014405	-	265	209694484	-	VSAL_I0913	-	putative hydrolytic enzyme
851	 25.76	-2	1014523..1014720	-	65	209694485	-	VSAL_I0914	-	hypothetical protein
852	 37.11	0	1014975..1015133	+	52	209694486	-	VSAL_I0915	-	membrane protein
853	 35.94	-1	1015660..1016541	-	293	209694487	-	VSAL_I0917	-	transposase
854	 37.00	0	1017599..1017925	-	108	209694488	-	VSAL_I0919	-	putative lipoprotein
855	 37.61	0	1018025..1020013	-	662	209694489	-	VSAL_I0920	-	nitrate and nitrite sensing methyl-accepting chemotaxis protein
856	 39.11	0	1020181..1020630	+	149	209694490	ribx	VSAL_I0921	-	putative rib operon regulator RibX
857	 42.34	0	1020632..1021753	+	373	209694491	ribD	VSAL_I0922	-	pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD)
858	 39.42	0	1021757..1022413	+	218	209694492	ribC	VSAL_I0923	-	riboflavin synthase alpha chain
859	 41.80	0	1022450..1023559	+	369	209694493	ribBA	VSAL_I0924	-	3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP cyclohydrolase II) (riboflavin biosynthesis protein RibBA)
860	 41.61	0	1023709..1024179	+	156	209694494	ribH	VSAL_I0925	-	6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)
861	 39.10	0	1024179..1024646	+	155	209694495	nusB	VSAL_I0926	-	N utilization substance protein B (protein NusB)
862	 37.46	0	1024736..1025728	+	330	209694496	thiL	VSAL_I0927	-	thiamine-monophosphate kinase
863	 36.71	0	1025731..1026234	+	167	209694497	pgpA	VSAL_I0928	-	phosphatidylglycerophosphatase A
864	 32.57	-2	1027355..1029592	+	745	209694498	luxQ	VSAL_I0930	-	autoinducer 2 sensor kinase/phosphatase LuxQ
865	 36.96	0	1029589..1029864	-	91	209694499	-	VSAL_I0931	-	hypothetical protein
866	 37.04	0	1029953..1030303	+	116	209694500	-	VSAL_I0932	-	antibiotic biosynthesis monooxygenase
867	 41.19	0	1030373..1032256	-	627	209694501	dxs	VSAL_I0933	-	1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose 5-phosphate synthase)
868	 40.36	0	1032279..1033175	-	298	209694502	ispA	VSAL_I0934	-	geranyltranstransferase
869	 41.15	0	1033168..1033410	-	80	209694503	xseB	VSAL_I0935	-	exodeoxyribonuclease VII small subunit
870	 38.56	0	1033690..1034454	+	254	209694504	motA	VSAL_I0936	-	sodium-driven polar flagellar protein MotA
871	 42.69	+1	1034469..1035398	+	309	209694505	motB	VSAL_I0937	-	sodium-driven polar flagellar protein MotB
872	 38.51	0	1035565..1037013	+	482	209694506	thiI	VSAL_I0938	-	thiamine biosynthesis protein ThiI
873	 37.04	0	1037075..1037992	-	305	209694507	-	VSAL_I0939	-	transcriptional regulator, LysR family
874	 33.76	-1	1038067..1039011	+	314	209694508	-	VSAL_I0940	-	integral membrane protein
875	 41.62	0	1039081..1039671	-	196	209694509	thiJ	VSAL_I0941	-	protein ThiJ
876	 38.11	0	1039668..1040567	-	299	209694510	panE	VSAL_I0942	-	2-dehydropantoate 2-reductase
877	 39.36	0	1041789..1043132	-	447	209694511	-	VSAL_I0944	-	MSF transporter
878	 39.78	0	1043240..1043797	-	185	209694512	rotA	VSAL_I0945	-	peptidyl-prolyl cis-trans isomerase precursor
879	 39.82	0	1043800..1044369	-	189	209694513	-	VSAL_I0946	-	putative lipoprotein
880	 38.03	0	1044383..1045531	-	382	209694514	-	VSAL_I0947	-	putative methyltransferase
881	 37.46	0	1045625..1045939	+	104	209694515	bolA	VSAL_I0948	-	BolA protein
882	 41.54	0	1046336..1047676	+	446	209694516	nqrA	VSAL_I0949	-	Na(+)-translocating NADH-ubiquinone reductase subunit A
883	 43.45	+1	1047680..1048924	+	414	209694517	nqrB	VSAL_I0950	-	Na(+)-translocating NADH-quinone reductase subunit B
884	 39.56	0	1048914..1049684	+	256	209694518	nqrC	VSAL_I0951	-	Na+-translocating NADH-quinone reductase subunit C
885	 35.40	-1	1049684..1050313	+	209	209694519	nqrD	VSAL_I0952	-	Na+-translocating NADH-quinone reductase subunit D
886	 38.69	0	1050321..1050917	+	198	209694520	nqrE	VSAL_I0953	-	Na+-translocating NADH-quinone reductase subunit E
887	 39.77	0	1050947..1052173	+	408	209694521	nqrF	VSAL_I0954	-	NADH-uniquinone oxidoreductase subunit F
888	 37.48	0	1052339..1053376	+	345	209694522	-	VSAL_I0955	-	thiamine biosynthesis lipoprotein ApbE precursor
889	 38.46	0	1053388..1053621	+	77	209694523	-	VSAL_I0956	-	hypothetical protein
890	 39.02	0	1053775..1054689	+	304	209694524	dinB	VSAL_I0957	-	DNA polymerase IV
891	 35.94	-1	1055612..1056493	+	293	209694525	-	VSAL_I0959	-	transposase
892	 38.97	0	1057929..1058141	-	70	209694526	ahdIC	VSAL_I0960	-	DNA methyltransferase
893	 36.31	-1	1058250..1058786	+	178	209694527	-	VSAL_I0961	-	hypothetical protein
894	 37.04	0	1058783..1060183	+	466	209694528	-	VSAL_I0962	-	putative type III restriction enzyme
895	 35.14	-1	1060435..1061100	-	221	209694529	-	VSAL_I0963	-	hypothetical protein
896	 36.09	-1	1063619..1064671	-	350	209694530	dinB	VSAL_I0965	-	DNA polymerase IV
897	 33.70	-1	1064843..1066204	-	453	209694531	-	VSAL_I0966	-	putative phage recombinase/integrase
898	 33.52	-1	1066206..1066727	-	173	209694532	-	VSAL_I0967	-	hypothetical protein, putative phage gene
899	 34.53	-1	1066728..1069151	-	807	209694533	-	VSAL_I0968	-	hypothetical protein, putative phage gene
900	 34.66	-1	1069145..1071484	-	779	209694534	-	VSAL_I0969	-	hypothetical protein, putative phage gene
901	 35.94	-1	1072345..1073226	-	293	209694535	-	VSAL_I0972	-	transposase
902	 42.47	0	1074320..1075774	-	484	209694536	-	VSAL_I0973	-	aminoacyl-histidine dipeptidase
903	 40.99	0	1076578..1077870	+	430	209694537	-	VSAL_I0974	-	membrane permease
904	 40.52	0	1077908..1078366	+	152	209694538	gpt	VSAL_I0975	-	xanthine phosphoribosyltransferase (xanthine-guanin phosphoribosyltransferase)
905	 39.94	0	1078525..1079766	+	413	209694539	-	VSAL_I0976	-	putative esterase
906	 41.08	0	1079931..1081040	+	369	209694540	proB	VSAL_I0977	-	glutamate 5-kinase
907	 41.79	0	1081071..1082312	+	413	209694541	proA	VSAL_I0978	-	gamma-glutamyl phosphate reductase
908	 42.75	+1	1082414..1083379	-	321	209694542	lipA	VSAL_I0979	-	lipoyl synthase (lipoic acid synthase)
909	 39.88	0	1083372..1084058	-	228	209694543	lipB	VSAL_I0980	-	lipoyltransferase (lipoate-protein ligase B)
910	 40.00	0	1084196..1084465	-	89	209694544	-	VSAL_I0981	-	hypothetical protein
911	 38.10	0	1084621..1085796	-	391	209694545	dacA	VSAL_I0982	-	penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A)
912	 37.04	0	1086079..1086888	-	269	209694546	-	VSAL_I0983	-	rare lipoprotein A
913	 41.00	0	1086892..1088013	-	373	209694547	mrdB	VSAL_I0984	-	rod shape-determining protein RodA
914	 41.05	0	1088013..1089890	-	625	209694548	mrdA	VSAL_I0985	-	penicillin-binding protein 2
915	 42.68	+1	1089894..1090364	-	156	209694549	-	VSAL_I0986	-	hypothetical protein
916	 39.94	0	1090368..1090685	-	105	209694550	-	VSAL_I0987	-	hypothetical protein
917	 36.99	0	1090734..1091771	-	345	209694551	holA	VSAL_I0988	-	DNA polymerase III, delta subunit
918	 38.70	0	1091774..1092406	-	210	209694552	-	VSAL_I0989	-	rare lipoprotein B precursor
919	 43.19	+1	1092574..1095150	-	858	209694553	leuS	VSAL_I0990	-	leucyl-tRNA synthetase
920	 38.51	0	1095318..1095800	+	160	209694554	-	VSAL_I0991	-	hypothetical protein
921	 40.70	0	1095871..1097376	-	501	209694555	lnt	VSAL_I0992	-	apolipoprotein N-acyltransferase
922	 40.98	0	1097468..1098343	-	291	209694556	-	VSAL_I0993	-	hemolysin
923	 37.88	0	1098413..1098874	-	153	209694557	-	VSAL_I0994	-	hypothetical protein
924	 40.52	0	1098896..1099966	-	356	209694558	-	VSAL_I0995	-	PhoH-like protein
925	 40.70	0	1100110..1101534	-	474	209694559	-	VSAL_I0996	-	hypothetical protein
926	 37.91	0	1101750..1102907	+	385	209694560	ubiF	VSAL_I0997	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
927	 37.78	0	1103104..1103418	+	104	209694561	-	VSAL_I0998	-	transposase
928	 36.21	-1	1103415..1103762	+	115	209694562	-	VSAL_I0999	-	transposase
929	 40.54	0	1105138..1106331	-	397	209694563	-	VSAL_I1001	-	transposase
930	 37.33	0	1107542..1108141	-	199	209694564	-	VSAL_I1003	-	putative HTH-type transcriptional regulator
931	 42.27	0	1108316..1109266	+	316	209694565	-	VSAL_I1004	-	putative transport protein
932	 39.39	0	1109413..1109643	+	76	209694566	-	VSAL_I1005	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.