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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 804 36.92 0 958628..958822 + 64 209694438 - VSAL_I0859 - hypothetical protein 805 39.36 0 958840..959751 - 303 209694439 metR VSAL_I0860 - transcriptional activator MetR 806 35.94 -1 960370..961251 + 293 209694440 - VSAL_I0862 - transposase 807 44.36 +1 965183..966433 - 416 209694441 glyA VSAL_I0864 - serine hydroxymethyltransferase 808 37.44 0 966748..967356 + 202 209694442 - VSAL_I0865 - putative ABC transporter permease 809 41.59 0 967429..967755 - 108 209694443 - VSAL_I0866 - putative lipoprotein 810 40.16 0 968844..969854 - 336 209694444 dppD VSAL_I0868 - dipeptide transport ATP-binding protein DppD 811 39.50 0 969878..971758 - 626 209694445 - VSAL_I0869 - extracellular solute-binding protein 812 39.98 0 971751..972803 - 350 209694446 yejE VSAL_I0870 - inner membrane ABC transporter permease protein 813 40.43 0 972806..973834 - 342 209694447 yejB VSAL_I0871 - inner membrane ABC transporter permease protein 814 35.59 -1 974090..974266 - 58 209694448 - VSAL_I0872 - hypothetical protein 815 42.21 0 974411..975142 - 243 209694449 - VSAL_I0873 - hypothetical protein 816 40.68 0 975139..976839 - 566 209694450 - VSAL_I0874 - hypothetical protein 817 44.32 +1 976947..978521 - 524 209694451 - VSAL_I0875 - glycine betaine transporter OpuD 818 42.42 0 978620..979609 - 329 209694452 - VSAL_I0876 - membrane dipeptidase 819 45.49 +1 979666..981129 - 487 209694453 - VSAL_I0877 - aldehyde dehydrogenase 820 42.19 0 981216..981599 - 127 209694454 - VSAL_I0878 - endoribonuclease L-PSP 821 40.05 0 981768..982646 + 292 209694455 - VSAL_I0879 - transcriptional regulator, LysR-family 822 32.42 -2 982878..983096 + 72 209694456 - VSAL_I0880 - hypothetical protein 823 36.16 -1 983209..983985 - 258 209694457 - VSAL_I0881 - hypothetical protein 824 41.93 0 984010..984765 - 251 209694458 - VSAL_I0882 - hypothetical protein 825 40.97 0 984783..987374 - 863 209694459 - VSAL_I0883 - hypothetical protein 826 37.44 0 987481..987894 - 137 209694460 - VSAL_I0884 - hypothetical protein 827 40.40 0 988174..988725 - 183 209694461 gmhB VSAL_I0885 - D,D-heptose 1,7-bisphosphate phosphatase 828 38.55 0 988979..990013 + 344 209694462 metN VSAL_I0886 - D-methionine transport ATP-binding protein MetN 829 42.33 0 990003..990680 + 225 209694463 metI VSAL_I0887 - D-methionine transport system permease protein MetI 830 40.86 0 990725..991534 + 269 209694464 metQ VSAL_I0888 - D-methionine-binding lipoprotein MetQ precursor 831 34.78 -1 991596..991733 - 45 209694465 - VSAL_I0889 - 50S ribosomal protein L36 832 37.21 0 991733..991990 - 85 209694466 rpmE2 VSAL_I0890 - 50S ribosomal protein L31 type B 833 42.49 0 992134..992832 + 232 209694467 - VSAL_I0891 - hypothetical protein 834 45.28 +1 992979..994694 + 571 209694468 proS VSAL_I0892 - prolyl-tRNA synthetase 835 36.31 -1 994766..995236 - 156 209694469 - VSAL_I0893 - hypothetical protein 836 37.46 0 996870..997184 + 104 209694470 - VSAL_I0895 - transposase 837 36.21 -1 997181..997528 + 115 209694471 - VSAL_I0896 - transposase 838 38.23 0 999132..1000010 - 292 209694472 - VSAL_I0898 - HTH-type transcriptional regulator, rpiR family 839 40.49 0 1000299..1001192 + 297 209694473 - VSAL_I0899 - dihydropicolinate synthase 840 38.36 0 1001328..1001546 + 72 209694474 - VSAL_I0900 - hypothetical protein 841 32.80 -2 1001546..1001734 + 62 209694475 - VSAL_I0901 - hypothetical protein 842 37.78 0 1003914..1004228 + 104 209694476 - VSAL_I0903 - transposase 843 35.92 -1 1004225..1004572 + 115 209694477 - VSAL_I0904 - transposase 844 40.00 0 1007807..1008676 - 289 209694478 - VSAL_I0907 - putative hydrolase 845 39.43 0 1008683..1009240 - 185 209694479 - VSAL_I0908 - outer membrane lipoprotein, Slp family 846 41.00 0 1009256..1009555 - 99 209694480 - VSAL_I0909 - hypothetical protein 847 43.73 +1 1009618..1010319 - 233 209694481 - VSAL_I0910 - glycoprotease 848 42.02 0 1010327..1012282 - 651 209694482 - VSAL_I0911 - putative ATP-dependent helicase 849 37.53 0 1012702..1013535 + 277 209694483 purU VSAL_I0912 - formyltetrahydrofolate deformylase 850 36.09 -1 1013608..1014405 - 265 209694484 - VSAL_I0913 - putative hydrolytic enzyme 851 25.76 -2 1014523..1014720 - 65 209694485 - VSAL_I0914 - hypothetical protein 852 37.11 0 1014975..1015133 + 52 209694486 - VSAL_I0915 - membrane protein 853 35.94 -1 1015660..1016541 - 293 209694487 - VSAL_I0917 - transposase 854 37.00 0 1017599..1017925 - 108 209694488 - VSAL_I0919 - putative lipoprotein 855 37.61 0 1018025..1020013 - 662 209694489 - VSAL_I0920 - nitrate and nitrite sensing methyl-accepting chemotaxis protein 856 39.11 0 1020181..1020630 + 149 209694490 ribx VSAL_I0921 - putative rib operon regulator RibX 857 42.34 0 1020632..1021753 + 373 209694491 ribD VSAL_I0922 - pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) 858 39.42 0 1021757..1022413 + 218 209694492 ribC VSAL_I0923 - riboflavin synthase alpha chain 859 41.80 0 1022450..1023559 + 369 209694493 ribBA VSAL_I0924 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP cyclohydrolase II) (riboflavin biosynthesis protein RibBA) 860 41.61 0 1023709..1024179 + 156 209694494 ribH VSAL_I0925 - 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain) 861 39.10 0 1024179..1024646 + 155 209694495 nusB VSAL_I0926 - N utilization substance protein B (protein NusB) 862 37.46 0 1024736..1025728 + 330 209694496 thiL VSAL_I0927 - thiamine-monophosphate kinase 863 36.71 0 1025731..1026234 + 167 209694497 pgpA VSAL_I0928 - phosphatidylglycerophosphatase A 864 32.57 -2 1027355..1029592 + 745 209694498 luxQ VSAL_I0930 - autoinducer 2 sensor kinase/phosphatase LuxQ 865 36.96 0 1029589..1029864 - 91 209694499 - VSAL_I0931 - hypothetical protein 866 37.04 0 1029953..1030303 + 116 209694500 - VSAL_I0932 - antibiotic biosynthesis monooxygenase 867 41.19 0 1030373..1032256 - 627 209694501 dxs VSAL_I0933 - 1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose 5-phosphate synthase) 868 40.36 0 1032279..1033175 - 298 209694502 ispA VSAL_I0934 - geranyltranstransferase 869 41.15 0 1033168..1033410 - 80 209694503 xseB VSAL_I0935 - exodeoxyribonuclease VII small subunit 870 38.56 0 1033690..1034454 + 254 209694504 motA VSAL_I0936 - sodium-driven polar flagellar protein MotA 871 42.69 +1 1034469..1035398 + 309 209694505 motB VSAL_I0937 - sodium-driven polar flagellar protein MotB 872 38.51 0 1035565..1037013 + 482 209694506 thiI VSAL_I0938 - thiamine biosynthesis protein ThiI 873 37.04 0 1037075..1037992 - 305 209694507 - VSAL_I0939 - transcriptional regulator, LysR family 874 33.76 -1 1038067..1039011 + 314 209694508 - VSAL_I0940 - integral membrane protein 875 41.62 0 1039081..1039671 - 196 209694509 thiJ VSAL_I0941 - protein ThiJ 876 38.11 0 1039668..1040567 - 299 209694510 panE VSAL_I0942 - 2-dehydropantoate 2-reductase 877 39.36 0 1041789..1043132 - 447 209694511 - VSAL_I0944 - MSF transporter 878 39.78 0 1043240..1043797 - 185 209694512 rotA VSAL_I0945 - peptidyl-prolyl cis-trans isomerase precursor 879 39.82 0 1043800..1044369 - 189 209694513 - VSAL_I0946 - putative lipoprotein 880 38.03 0 1044383..1045531 - 382 209694514 - VSAL_I0947 - putative methyltransferase 881 37.46 0 1045625..1045939 + 104 209694515 bolA VSAL_I0948 - BolA protein 882 41.54 0 1046336..1047676 + 446 209694516 nqrA VSAL_I0949 - Na(+)-translocating NADH-ubiquinone reductase subunit A 883 43.45 +1 1047680..1048924 + 414 209694517 nqrB VSAL_I0950 - Na(+)-translocating NADH-quinone reductase subunit B 884 39.56 0 1048914..1049684 + 256 209694518 nqrC VSAL_I0951 - Na+-translocating NADH-quinone reductase subunit C 885 35.40 -1 1049684..1050313 + 209 209694519 nqrD VSAL_I0952 - Na+-translocating NADH-quinone reductase subunit D 886 38.69 0 1050321..1050917 + 198 209694520 nqrE VSAL_I0953 - Na+-translocating NADH-quinone reductase subunit E 887 39.77 0 1050947..1052173 + 408 209694521 nqrF VSAL_I0954 - NADH-uniquinone oxidoreductase subunit F 888 37.48 0 1052339..1053376 + 345 209694522 - VSAL_I0955 - thiamine biosynthesis lipoprotein ApbE precursor 889 38.46 0 1053388..1053621 + 77 209694523 - VSAL_I0956 - hypothetical protein 890 39.02 0 1053775..1054689 + 304 209694524 dinB VSAL_I0957 - DNA polymerase IV 891 35.94 -1 1055612..1056493 + 293 209694525 - VSAL_I0959 - transposase 892 38.97 0 1057929..1058141 - 70 209694526 ahdIC VSAL_I0960 - DNA methyltransferase 893 36.31 -1 1058250..1058786 + 178 209694527 - VSAL_I0961 - hypothetical protein 894 37.04 0 1058783..1060183 + 466 209694528 - VSAL_I0962 - putative type III restriction enzyme 895 35.14 -1 1060435..1061100 - 221 209694529 - VSAL_I0963 - hypothetical protein 896 36.09 -1 1063619..1064671 - 350 209694530 dinB VSAL_I0965 - DNA polymerase IV 897 33.70 -1 1064843..1066204 - 453 209694531 - VSAL_I0966 - putative phage recombinase/integrase 898 33.52 -1 1066206..1066727 - 173 209694532 - VSAL_I0967 - hypothetical protein, putative phage gene 899 34.53 -1 1066728..1069151 - 807 209694533 - VSAL_I0968 - hypothetical protein, putative phage gene 900 34.66 -1 1069145..1071484 - 779 209694534 - VSAL_I0969 - hypothetical protein, putative phage gene 901 35.94 -1 1072345..1073226 - 293 209694535 - VSAL_I0972 - transposase 902 42.47 0 1074320..1075774 - 484 209694536 - VSAL_I0973 - aminoacyl-histidine dipeptidase 903 40.99 0 1076578..1077870 + 430 209694537 - VSAL_I0974 - membrane permease 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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