IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
34	 40.55	0	37276..38466	-	396	209693668	-	VSAL_I0035	-	transposase
35	 35.94	-1	40119..41000	+	293	209693669	-	VSAL_I0038	-	transposase
36	 40.69	0	41289..42239	+	316	209693670	-	VSAL_I0039	-	transposase
37	 40.54	0	42740..43933	+	397	209693671	-	VSAL_I0040	-	transposase
38	 43.75	+1	44867..46393	+	508	209693672	-	VSAL_I0042	-	putative competence protein
39	 37.82	0	46481..47350	+	289	209693673	-	VSAL_I0043	-	putative acyltransferase
40	 37.18	0	47417..48040	-	207	209693674	dsbA	VSAL_I0044	-	thiol/disulfide interchange protein DsbA precursor
41	 41.87	0	48066..49049	-	327	209693675	rdoA	VSAL_I0045	-	putative phosphotransferase
42	 39.25	0	49108..50526	-	472	209693676	-	VSAL_I0046	-	putative ferredoxin
43	 36.74	0	50752..51015	-	87	209693677	-	VSAL_I0047	-	hypothetical protein
44	 38.04	0	51533..52318	+	261	209693678	-	VSAL_I0048	-	putative sporulation-control protein
45	 36.11	-1	52420..53067	+	215	209693679	hlyIII	VSAL_I0049	-	hemolysin III
46	 40.62	0	53364..54557	-	397	209693680	-	VSAL_I0050	-	transposase
47	 42.38	0	54711..54920	-	69	209693681	cspV	VSAL_I0051	-	cold shock protein
48	 42.27	0	55198..56730	-	510	209693682	ilvA	VSAL_I0052	-	threonine dehydratase
49	 44.87	+1	56735..58207	-	490	209693683	ilvD	VSAL_I0053	-	dihydroxy-acid dehydratase
50	 40.56	0	58234..58482	-	82	209693684	ilvM	VSAL_I0054	-	putative acetolactate synthase small regulatory subunit
51	 40.54	0	59847..61040	+	397	209693685	-	VSAL_I0056	-	transposase
52	 32.77	-2	61632..62159	+	175	209693686	-	VSAL_I0057	-	hypothetical protein
53	 39.35	0	62442..63239	+	265	209693687	-	VSAL_I0058	-	putative ParA chromosome partitioning protein
54	 39.49	0	63236..64210	+	324	209693688	-	VSAL_I0059	-	putative chromosome partitioning protein ParB
55	 41.98	0	64200..64604	+	134	209693689	-	VSAL_I0060	-	hypothetical protein
56	 38.98	0	64789..65160	+	123	209693690	-	VSAL_I0061	-	hypothetical protein
57	 34.85	-1	65851..66444	-	197	209693691	-	VSAL_I0062	-	hypothetical protein
58	 37.82	0	69062..69418	+	118	209693692	-	VSAL_I0065	-	transposase
59	 37.37	0	69494..69790	+	98	209693693	-	VSAL_I0066	-	transposase
60	 36.21	-1	72716..73063	-	115	209693694	-	VSAL_I0069	-	transposase
61	 37.78	0	73060..73374	-	104	209693695	-	VSAL_I0070	-	transposase
62	 44.01	+1	74902..76278	-	458	209693696	trkA	VSAL_I0072	-	Trk system potassium uptake protein TrkA
63	 43.00	+1	76303..77637	-	444	209693697	rsmB	VSAL_I0073	-	ribosomal RNA small subunit methyltransferase B
64	 42.96	+1	77686..78651	-	321	209693698	fmt	VSAL_I0074	-	methionyl-tRNA formyltransferase
65	 40.20	0	78654..79163	-	169	209693699	def	VSAL_I0075	-	peptide deformylase (polypeptide deformylase)
66	 37.85	0	79281..80342	+	353	209693700	-	VSAL_I0076	-	putative cell wall degradation enzyme
67	 43.24	+1	80351..81460	+	369	209693701	smf	VSAL_I0077	-	Smf protein
68	 37.34	0	81463..81936	+	157	209693702	-	VSAL_I0078	-	hypothetical protein
69	 38.60	0	81946..82515	+	189	209693703	yrdD	VSAL_I0079	-	DNA topoisomerase
70	 38.78	0	82555..83673	-	372	209693704	purK	VSAL_I0080	-	phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
71	 43.20	+1	83673..84209	-	178	209693705	purE	VSAL_I0081	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
72	 41.40	0	84360..84917	+	185	209693706	-	VSAL_I0082	-	hypothetical protein
73	 38.81	0	84984..85805	+	273	209693707	aroE	VSAL_I0083	-	shikimate dehydrogenase
74	 35.48	-1	85879..86064	+	61	209693708	-	VSAL_I0084	-	hypothetical protein
75	 34.62	-1	86057..86602	-	181	209693709	-	VSAL_I0085	-	putative transferase
76	 33.56	-1	114812..115696	-	294	209693710	ilvY	VSAL_I0086	-	HTH-type transcriptional regulator, LysR-family
77	 39.06	0	115825..117309	+	494	209693711	ilvC	VSAL_I0087	-	ketol-acid reductoisomerase
78	 33.33	-1	117397..117648	-	83	209693712	-	VSAL_I0088	-	hypothetical protein
79	 40.89	0	117758..120826	-	1022	209693713	-	VSAL_I0089	-	putative integral membrane component of multidrug efflux system
80	 39.30	0	120838..121944	-	368	209693714	-	VSAL_I0090	-	putative multidrug transporter, HlyD family
81	 37.00	0	121963..122562	-	199	209693715	-	VSAL_I0091	-	HTH-type transcriptional regulator, TetR family
82	 39.58	0	122717..124732	+	671	209693716	rep	VSAL_I0092	-	ATP-dependent DNA helicase rep
83	 43.63	+1	124833..125240	-	135	209693717	-	VSAL_I0093	-	cytochrome c
84	 41.76	0	128498..130051	+	517	209693718	-	VSAL_I0095	-	transport protein, extracellular solute-binding protein
85	 40.29	0	130188..131165	+	325	209693719	-	VSAL_I0096	-	binding-protein-dependent transport system,inner membrane component
86	 42.46	0	131168..132109	+	313	209693720	-	VSAL_I0097	-	binding-protein-dependent transport system,inner membrane component
87	 43.26	+1	132347..133927	+	526	209693721	-	VSAL_I0098	-	transporter, BCCT family
88	 40.03	0	134012..134728	-	238	209693722	-	VSAL_I0099	-	putative exonuclease
89	 40.99	0	134738..136618	-	626	209693723	-	VSAL_I0100	-	putative cyclic nucleotide binding protein
90	 41.18	0	136794..137672	+	292	209693724	-	VSAL_I0101	-	hypothetical protein
91	 39.39	0	137656..137919	+	87	209693725	-	VSAL_I0102	-	hypothetical protein
92	 38.81	0	137970..139940	-	656	209693726	-	VSAL_I0103	-	HTH-type transcriptional regulator
93	 42.38	0	140087..140827	-	246	209693727	-	VSAL_I0104	-	hypothetical protein
94	 42.60	+1	140840..141886	-	348	209693728	-	VSAL_I0105	-	hypothetical protein
95	 40.72	0	141927..143063	-	378	209693729	-	VSAL_I0106	-	hypothetical protein
96	 45.62	+1	143122..143772	-	216	209693730	-	VSAL_I0107	-	membrane protein
97	 47.18	+2	143787..144566	-	259	209693731	-	VSAL_I0108	-	membrane protein
98	 28.62	-2	144627..144923	-	98	209693732	-	VSAL_I0109	-	hypothetical protein
99	 45.18	+1	144926..145288	-	120	209693733	-	VSAL_I0110	-	hypothetical protein
100	 31.03	-2	145290..145637	-	115	209693734	-	VSAL_I0111	-	hypothetical protein
101	 36.05	-1	145902..146783	+	293	209693735	-	VSAL_I0112	-	transposase
102	 37.78	0	146904..147218	+	104	209693736	-	VSAL_I0113	-	transposase
103	 36.21	-1	147215..147562	+	115	209693737	-	VSAL_I0114	-	transposase
104	 39.72	0	147634..149121	+	495	209693738	-	VSAL_I0115	-	transposase
105	 36.60	0	149312..151027	-	571	209693739	-	VSAL_I0116	-	hypothetical protein
106	 33.16	-2	151287..151856	-	189	209693740	-	VSAL_I0117	-	putative RNA polymerase sigma factor
107	 33.04	-2	151960..153300	-	446	209693741	-	VSAL_I0118	-	putative protein kinase
108	 38.92	0	153609..154199	+	196	209693742	-	VSAL_I0119	-	hypothetical protein
109	 43.36	+1	154286..155641	-	451	209693743	gor	VSAL_I0120	-	glutathione reductase
110	 41.07	0	155854..156693	-	279	209693744	-	VSAL_I0121	-	hypothetical protein
111	 43.42	+1	156846..158888	+	680	209693745	prlC	VSAL_I0122	-	oligopeptidase A
112	 39.65	0	158962..160401	-	479	209693746	-	VSAL_I0123	-	putative exported peptidase
113	 37.78	0	160523..160837	-	104	209693747	cyaY	VSAL_I0124	-	protein CyaY
114	 42.82	+1	161114..162367	+	417	209693748	lysA	VSAL_I0125	-	diaminopimelate decarboxylase
115	 42.60	+1	162449..163279	+	276	209693749	dapF	VSAL_I0126	-	diaminopimelate epimerase
116	 39.46	0	163276..163977	+	233	209693750	-	VSAL_I0127	-	hypothetical protein
117	 42.11	0	163970..164881	+	303	209693751	xerC	VSAL_I0128	-	tyrosine recombinase XerC
118	 37.78	0	165050..165364	+	104	209693752	-	VSAL_I0129	-	transposase
119	 40.47	0	165725..166915	-	396	209693753	-	VSAL_I0131	-	transposase
120	 39.42	0	167270..167860	+	196	209693754	-	VSAL_I0132	-	putative lipoprotein
121	 37.33	0	167877..169328	+	483	209693755	-	VSAL_I0133	-	hypothetical protein
122	 39.92	0	169900..171447	+	515	209693756	-	VSAL_I0134	-	L-2,4-diaminobutyrate decarboxylase
123	 39.73	0	171464..172792	+	442	209693757	iucD	VSAL_I0135	-	siderophore biosynthetis protein
124	 39.67	0	172803..175262	+	819	209693758	iucC	VSAL_I0136	-	siderophore biosynthesis protein
125	 40.58	0	175286..177451	+	721	209693759	-	VSAL_I0137	-	TonB-dependent iron-siderophore receptor precursor
126	 43.32	+1	177570..178520	+	316	209693760	-	VSAL_I0138	-	iron-siderophore ABC transporter, periplasmic binding protein
127	 43.42	+1	178517..179617	+	366	209693761	fepD	VSAL_I0139	-	iron-siderophore ABC transporter, membrane permease component
128	 46.00	+2	179607..180632	+	341	209693762	fecD	VSAL_I0140	-	iron-siderophore ABC transporter, membrane permease component
129	 43.00	+1	180647..181453	+	268	209693763	fepC	VSAL_I0141	-	iron-siderophore ABC transporter, ATP-binding protein
130	 37.78	0	181578..181892	+	104	209693764	-	VSAL_I0142	-	transposase
131	 36.21	-1	181889..182236	+	115	209693765	-	VSAL_I0143	-	transposase
132	 39.72	0	182308..183795	+	495	209693766	-	VSAL_I0144	-	transposase
133	 43.75	+1	185316..186620	-	434	209693767	rhlB	VSAL_I0146	-	ATP-dependent RNA helicase RhlB
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.