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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 763 41.26 0 907133..908431 + 432 209694397 tig VSAL_I0817 - trigger factor (TF) 764 40.06 0 908532..909155 + 207 209694398 clpP VSAL_I0818 - ATP-dependent Clp protease proteolytic subunit 765 44.83 +1 910404..911612 + 402 209694399 tnpR VSAL_I0820 - transposase 766 39.72 0 912000..914363 + 787 209694400 lon VSAL_I0821 - ATP-dependent protease LA 767 40.74 0 914503..914799 + 98 209694401 hupB VSAL_I0822 - DNA-binding protein HU-beta 768 38.45 0 915001..916857 + 618 209694402 - VSAL_I0823 - peptidyl-prolyl cis-trans isomerase D 769 31.65 -2 917063..917359 + 98 209694403 - VSAL_I0824 - hypothetical protein 770 40.49 0 917450..918805 - 451 209694404 - VSAL_I0825 - di-/tripeptide transporter 771 33.73 -1 919200..919697 + 165 209694405 rfaH VSAL_I0826 - transcriptional activator RfaH 772 38.55 0 919744..921411 - 555 209694406 asnB VSAL_I0827 - asparagine synthetase B 773 37.31 0 921693..923276 - 527 209694407 - VSAL_I0828 - sodium/hydrogen antiporter 774 38.77 0 923355..924569 - 404 209694408 nagC VSAL_I0829 - N-acetylglucosamine repressor 775 39.49 0 924571..925707 - 378 209694409 nagA VSAL_I0830 - N-acetylglucosamine-6-phosphate deacetylase 776 42.05 0 926109..927599 + 496 209694410 nagE VSAL_I0831 - PTS permease for N-acetylglucosamine and glucose 777 38.58 0 927768..929426 + 552 209694411 glnS VSAL_I0832 - glutaminyl-tRNA synthetase 778 36.94 0 929500..929943 - 147 209694412 fur VSAL_I0833 - ferric uptake regulator protein 779 33.98 -1 930125..930589 + 154 209694413 - VSAL_I0834 - hypothetical protein 780 39.77 0 930627..931154 - 175 209694414 fldA VSAL_I0835 - flavodoxin 1 781 37.84 0 931214..931435 - 73 209694415 - VSAL_I0836 - hypothetical protein 782 36.94 0 931522..932298 - 258 209694416 - VSAL_I0837 - putative esterase 783 38.67 0 932392..932934 + 180 209694417 seqA VSAL_I0838 - protein SeqA (negative regulator of replication initiation) 784 39.22 0 932983..934629 + 548 209694418 pgm VSAL_I0839 - phosphoglucomutase 785 36.38 0 934715..935470 + 251 209694419 - VSAL_I0840 - hypothetical protein 786 40.93 0 935590..936879 - 429 209694420 gltA VSAL_I0841 - citrate synthase 787 39.80 0 937266..937667 + 133 209694421 sdhC VSAL_I0842 - succinate dehydrogenase cytochrome b556 subunit 788 39.94 0 937661..938008 + 115 209694422 sdhD VSAL_I0843 - succinate dehydrogenase hydrophobic membrane anchor protein 789 44.97 +1 938005..939774 + 589 209694423 sdhA VSAL_I0844 - succinate dehydrogenase flavoprotein subunit 790 40.20 0 939789..940502 + 237 209694424 sdhB VSAL_I0845 - succinate dehydrogenase iron-sulfur protein 791 42.53 0 940625..943441 + 938 209694425 sucA VSAL_I0846 - 2-oxoglutarate dehydrogenase E1 component 792 41.75 0 943461..944672 + 403 209694426 sucB VSAL_I0847 - dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 793 43.87 +1 944824..945990 + 388 209694427 sucC VSAL_I0848 - succinyl-CoA synthetase beta chain 794 42.38 0 945990..946862 + 290 209694428 sucD VSAL_I0849 - succinyl-CoA synthetase alpha chain 795 39.19 0 946963..947748 - 261 209694429 znuB VSAL_I0850 - high-affinity zinc uptake system membrane protein ZnuB 796 39.17 0 947745..948515 - 256 209694430 znuC VSAL_I0851 - high-affinity zinc uptake system atp-binding protein ZnuC 797 37.02 0 948604..949497 + 297 209694431 znuA VSAL_I0852 - high-affinity zinc uptake system protein ZnuA precursor 798 39.22 0 949494..950834 + 446 209694432 - VSAL_I0853 - exported peptidase 799 38.39 0 950894..951664 - 256 209694433 - VSAL_I0854 - hypothetical protein 800 40.98 0 952023..953303 + 426 209694434 tyrS VSAL_I0855 - tyrosyl-tRNA synthetase 801 42.82 +1 953440..955812 - 790 209694435 - VSAL_I0856 - hypothetical protein 802 42.47 0 956160..957527 - 455 209694436 dcuC VSAL_I0857 - anaerobic C4-dicarboxylate transporter DcuC 803 37.15 0 957853..958560 + 235 209694437 - VSAL_I0858 - membrane protein 804 36.92 0 958628..958822 + 64 209694438 - VSAL_I0859 - hypothetical protein 805 39.36 0 958840..959751 - 303 209694439 metR VSAL_I0860 - transcriptional activator MetR 806 35.94 -1 960370..961251 + 293 209694440 - VSAL_I0862 - transposase 807 44.36 +1 965183..966433 - 416 209694441 glyA VSAL_I0864 - serine hydroxymethyltransferase 808 37.44 0 966748..967356 + 202 209694442 - VSAL_I0865 - putative ABC transporter permease 809 41.59 0 967429..967755 - 108 209694443 - VSAL_I0866 - putative lipoprotein 810 40.16 0 968844..969854 - 336 209694444 dppD VSAL_I0868 - dipeptide transport ATP-binding protein DppD 811 39.50 0 969878..971758 - 626 209694445 - VSAL_I0869 - extracellular solute-binding protein 812 39.98 0 971751..972803 - 350 209694446 yejE VSAL_I0870 - inner membrane ABC transporter permease protein 813 40.43 0 972806..973834 - 342 209694447 yejB VSAL_I0871 - inner membrane ABC transporter permease protein 814 35.59 -1 974090..974266 - 58 209694448 - VSAL_I0872 - hypothetical protein 815 42.21 0 974411..975142 - 243 209694449 - VSAL_I0873 - hypothetical protein 816 40.68 0 975139..976839 - 566 209694450 - VSAL_I0874 - hypothetical protein 817 44.32 +1 976947..978521 - 524 209694451 - VSAL_I0875 - glycine betaine transporter OpuD 818 42.42 0 978620..979609 - 329 209694452 - VSAL_I0876 - membrane dipeptidase 819 45.49 +1 979666..981129 - 487 209694453 - VSAL_I0877 - aldehyde dehydrogenase 820 42.19 0 981216..981599 - 127 209694454 - VSAL_I0878 - endoribonuclease L-PSP 821 40.05 0 981768..982646 + 292 209694455 - VSAL_I0879 - transcriptional regulator, LysR-family 822 32.42 -2 982878..983096 + 72 209694456 - VSAL_I0880 - hypothetical protein 823 36.16 -1 983209..983985 - 258 209694457 - VSAL_I0881 - hypothetical protein 824 41.93 0 984010..984765 - 251 209694458 - VSAL_I0882 - hypothetical protein 825 40.97 0 984783..987374 - 863 209694459 - VSAL_I0883 - hypothetical protein 826 37.44 0 987481..987894 - 137 209694460 - VSAL_I0884 - hypothetical protein 827 40.40 0 988174..988725 - 183 209694461 gmhB VSAL_I0885 - D,D-heptose 1,7-bisphosphate phosphatase 828 38.55 0 988979..990013 + 344 209694462 metN VSAL_I0886 - D-methionine transport ATP-binding protein MetN 829 42.33 0 990003..990680 + 225 209694463 metI VSAL_I0887 - D-methionine transport system permease protein MetI 830 40.86 0 990725..991534 + 269 209694464 metQ VSAL_I0888 - D-methionine-binding lipoprotein MetQ precursor 831 34.78 -1 991596..991733 - 45 209694465 - VSAL_I0889 - 50S ribosomal protein L36 832 37.21 0 991733..991990 - 85 209694466 rpmE2 VSAL_I0890 - 50S ribosomal protein L31 type B 833 42.49 0 992134..992832 + 232 209694467 - VSAL_I0891 - hypothetical protein 834 45.28 +1 992979..994694 + 571 209694468 proS VSAL_I0892 - prolyl-tRNA synthetase 835 36.31 -1 994766..995236 - 156 209694469 - VSAL_I0893 - hypothetical protein 836 37.46 0 996870..997184 + 104 209694470 - VSAL_I0895 - transposase 837 36.21 -1 997181..997528 + 115 209694471 - VSAL_I0896 - transposase 838 38.23 0 999132..1000010 - 292 209694472 - VSAL_I0898 - HTH-type transcriptional regulator, rpiR family 839 40.49 0 1000299..1001192 + 297 209694473 - VSAL_I0899 - dihydropicolinate synthase 840 38.36 0 1001328..1001546 + 72 209694474 - VSAL_I0900 - hypothetical protein 841 32.80 -2 1001546..1001734 + 62 209694475 - VSAL_I0901 - hypothetical protein 842 37.78 0 1003914..1004228 + 104 209694476 - VSAL_I0903 - transposase 843 35.92 -1 1004225..1004572 + 115 209694477 - VSAL_I0904 - transposase 844 40.00 0 1007807..1008676 - 289 209694478 - VSAL_I0907 - putative hydrolase 845 39.43 0 1008683..1009240 - 185 209694479 - VSAL_I0908 - outer membrane lipoprotein, Slp family 846 41.00 0 1009256..1009555 - 99 209694480 - VSAL_I0909 - hypothetical protein 847 43.73 +1 1009618..1010319 - 233 209694481 - VSAL_I0910 - glycoprotease 848 42.02 0 1010327..1012282 - 651 209694482 - VSAL_I0911 - putative ATP-dependent helicase 849 37.53 0 1012702..1013535 + 277 209694483 purU VSAL_I0912 - formyltetrahydrofolate deformylase 850 36.09 -1 1013608..1014405 - 265 209694484 - VSAL_I0913 - putative hydrolytic enzyme 851 25.76 -2 1014523..1014720 - 65 209694485 - VSAL_I0914 - hypothetical protein 852 37.11 0 1014975..1015133 + 52 209694486 - VSAL_I0915 - membrane protein 853 35.94 -1 1015660..1016541 - 293 209694487 - VSAL_I0917 - transposase 854 37.00 0 1017599..1017925 - 108 209694488 - VSAL_I0919 - putative lipoprotein 855 37.61 0 1018025..1020013 - 662 209694489 - VSAL_I0920 - nitrate and nitrite sensing methyl-accepting chemotaxis protein 856 39.11 0 1020181..1020630 + 149 209694490 ribx VSAL_I0921 - putative rib operon regulator RibX 857 42.34 0 1020632..1021753 + 373 209694491 ribD VSAL_I0922 - pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) 858 39.42 0 1021757..1022413 + 218 209694492 ribC VSAL_I0923 - riboflavin synthase alpha chain 859 41.80 0 1022450..1023559 + 369 209694493 ribBA VSAL_I0924 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP cyclohydrolase II) (riboflavin biosynthesis protein RibBA) 860 41.61 0 1023709..1024179 + 156 209694494 ribH VSAL_I0925 - 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain) 861 39.10 0 1024179..1024646 + 155 209694495 nusB VSAL_I0926 - N utilization substance protein B (protein NusB) 862 37.46 0 1024736..1025728 + 330 209694496 thiL VSAL_I0927 - thiamine-monophosphate kinase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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