IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
714	 41.72	0	849441..850346	-	301	209694348	rimK	VSAL_I0760	-	ribosomal protein S6 modification protein
715	 40.59	0	850346..850786	-	146	209694349	-	VSAL_I0761	-	hypothetical protein
716	 40.00	0	851281..852645	+	454	209694350	-	VSAL_I0762	-	sodium-dependent transporter
717	 37.78	0	855265..855579	-	104	209694351	-	VSAL_I0766	-	transposase
718	 43.88	+1	855807..856337	-	176	209694352	-	VSAL_I0768	-	hypothetical protein, putative phage gene
719	 44.73	+1	856328..856801	-	157	209694353	-	VSAL_I0769	-	hypothetical protein, putative phage gene
720	 46.84	+2	856805..857263	-	152	209694354	-	VSAL_I0770	-	hypothetical protein, putative phage gene
721	 44.83	+1	857360..858394	-	344	209694355	-	VSAL_I0771	-	phage major capsid protein
722	 45.25	+1	858446..859318	-	290	209694356	-	VSAL_I0772	-	probable capsid scaffolding protein
723	 44.69	+1	859448..861244	+	598	209694357	-	VSAL_I0773	-	putative bacteriophage terminase
724	 30.57	-2	862454..863467	-	337	209694358	-	VSAL_I0775	-	hypothetical protein, putative phage gene
725	 41.01	0	864223..864978	-	251	209694359	-	VSAL_I0777	-	N-acetylmuramoyl-L-alanine amidase
726	 38.57	0	865267..865629	-	120	209694360	-	VSAL_I0778	-	hypothetical protein, putative phage gene
727	 40.94	0	865634..865804	-	56	209694361	-	VSAL_I0779	-	putative membrane protein, putative phage gene
728	 44.86	+1	865839..866237	-	132	209694362	-	VSAL_I0780	-	putative membrane protein, putative phage gene
729	 37.78	0	866373..866687	+	104	209694363	-	VSAL_I0781	-	transposase
730	 36.21	-1	866684..867031	+	115	209694364	-	VSAL_I0782	-	transposase
731	 39.78	0	867103..868590	+	495	209694365	-	VSAL_I0783	-	transposase
732	 40.38	0	870657..871748	-	363	209694366	engD	VSAL_I0784	-	GTP-dependent nucleic acid-binding protein EngD
733	 40.78	0	871768..872358	-	196	209694367	pth	VSAL_I0785	-	peptidyl-tRNA hydrolase
734	 43.84	+1	872539..873537	-	332	209694368	prs	VSAL_I0786	-	ribose-phosphate pyrophosphokinase
735	 39.91	0	873525..874391	-	288	209694369	ispE	VSAL_I0787	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
736	 38.56	0	874388..874999	-	203	209694370	-	VSAL_I0788	-	outer-membrane lipoprotein LolB precursor
737	 40.57	0	875199..876455	+	418	209694371	hemA	VSAL_I0789	-	glutamyl-tRNA reductase
738	 43.25	+1	876495..877583	+	362	209694372	prfA	VSAL_I0790	-	peptide chain release factor 1
739	 39.79	0	877583..878449	+	288	209694373	hemK	VSAL_I0791	-	protein methyltransferase HemK
740	 37.27	0	878453..878833	+	126	209694374	-	VSAL_I0792	-	protein SirB, invasion gene expression up-regulator
741	 38.27	0	878836..879645	+	269	209694375	-	VSAL_I0793	-	protein SirB1
742	 40.00	0	879657..880511	+	284	209694376	kdsA	VSAL_I0794	-	2-dehydro-3-deoxyphosphooctonate aldolase
743	 40.82	0	880601..881428	-	275	209694377	cysG	VSAL_I0795	-	siroheme synthase (Includes: Uroporphyrin-III C-methyltransferase, Precorrin-2 dehydrogenase,Sirohydrochlorin ferrochelatase)
744	 41.70	0	881524..882336	-	270	209694378	-	VSAL_I0796	-	formate/nitrite transporter
745	 42.42	0	882434..882763	-	109	209694379	nirD	VSAL_I0797	-	nitrite reductase (NAD(P)H) small subunit
746	 43.81	+1	882766..885342	-	858	209694380	nirB	VSAL_I0798	-	nitrite reductase (NAD(P)H) large subunit
747	 40.75	0	885635..887509	-	624	209694381	-	VSAL_I0799	-	methyl-accepting chemotaxis protein
748	 40.79	0	887932..889593	+	553	209694382	nutA	VSAL_I0800	-	5'-nucleotidase precursor
749	 38.39	0	889989..890423	-	144	209694383	-	VSAL_I0801	-	hypothetical protein
750	 41.38	0	890523..893231	-	902	209694384	copA	VSAL_I0802	-	copper-transporting P-type ATPase
751	 37.59	0	893319..893717	+	132	209694385	cueR	VSAL_I0803	-	HTH-type transcriptional regulator CueR (copper export regulator)
752	 39.18	0	893742..894596	-	284	209694386	-	VSAL_I0804	-	thioredoxin
753	 38.65	0	894931..895758	-	275	209694387	-	VSAL_I0805	-	putative exported NAD-or NADP-dependent oxidoreductase
754	 37.86	0	895887..896792	-	301	209694388	-	VSAL_I0806	-	putative NAD dependent epimerase/dehydratase
755	 38.66	0	896899..897480	+	193	209694389	yfcE	VSAL_I0807	-	phosphodiesterase
756	 37.82	0	898508..898819	+	103	209694390	-	VSAL_I0809	-	transposase
757	 36.21	-1	898816..899163	+	115	209694391	-	VSAL_I0810	-	transposase
758	 39.65	0	899235..900722	+	495	209694392	-	VSAL_I0811	-	transposase
759	 37.36	0	901288..901833	-	181	209694393	toxS	VSAL_I0812	-	transmembrane regulatory protein ToxS
760	 38.23	0	902909..904807	+	632	209694394	htpG	VSAL_I0814	-	chaperone protein HtpG (heat shock protein HtpG)
761	 41.82	0	905084..905731	+	215	209694395	adk	VSAL_I0815	-	adenylate kinase
762	 38.49	0	905815..906783	+	322	209694396	hemH	VSAL_I0816	-	ferrochelatase
763	 41.26	0	907133..908431	+	432	209694397	tig	VSAL_I0817	-	trigger factor (TF)
764	 40.06	0	908532..909155	+	207	209694398	clpP	VSAL_I0818	-	ATP-dependent Clp protease proteolytic subunit
765	 44.83	+1	910404..911612	+	402	209694399	tnpR	VSAL_I0820	-	transposase
766	 39.72	0	912000..914363	+	787	209694400	lon	VSAL_I0821	-	ATP-dependent protease LA
767	 40.74	0	914503..914799	+	98	209694401	hupB	VSAL_I0822	-	DNA-binding protein HU-beta
768	 38.45	0	915001..916857	+	618	209694402	-	VSAL_I0823	-	peptidyl-prolyl cis-trans isomerase D
769	 31.65	-2	917063..917359	+	98	209694403	-	VSAL_I0824	-	hypothetical protein
770	 40.49	0	917450..918805	-	451	209694404	-	VSAL_I0825	-	di-/tripeptide transporter
771	 33.73	-1	919200..919697	+	165	209694405	rfaH	VSAL_I0826	-	transcriptional activator RfaH
772	 38.55	0	919744..921411	-	555	209694406	asnB	VSAL_I0827	-	asparagine synthetase B
773	 37.31	0	921693..923276	-	527	209694407	-	VSAL_I0828	-	sodium/hydrogen antiporter
774	 38.77	0	923355..924569	-	404	209694408	nagC	VSAL_I0829	-	N-acetylglucosamine repressor
775	 39.49	0	924571..925707	-	378	209694409	nagA	VSAL_I0830	-	N-acetylglucosamine-6-phosphate deacetylase
776	 42.05	0	926109..927599	+	496	209694410	nagE	VSAL_I0831	-	PTS permease for N-acetylglucosamine and glucose
777	 38.58	0	927768..929426	+	552	209694411	glnS	VSAL_I0832	-	glutaminyl-tRNA synthetase
778	 36.94	0	929500..929943	-	147	209694412	fur	VSAL_I0833	-	ferric uptake regulator protein
779	 33.98	-1	930125..930589	+	154	209694413	-	VSAL_I0834	-	hypothetical protein
780	 39.77	0	930627..931154	-	175	209694414	fldA	VSAL_I0835	-	flavodoxin 1
781	 37.84	0	931214..931435	-	73	209694415	-	VSAL_I0836	-	hypothetical protein
782	 36.94	0	931522..932298	-	258	209694416	-	VSAL_I0837	-	putative esterase
783	 38.67	0	932392..932934	+	180	209694417	seqA	VSAL_I0838	-	protein SeqA (negative regulator of replication initiation)
784	 39.22	0	932983..934629	+	548	209694418	pgm	VSAL_I0839	-	phosphoglucomutase
785	 36.38	0	934715..935470	+	251	209694419	-	VSAL_I0840	-	hypothetical protein
786	 40.93	0	935590..936879	-	429	209694420	gltA	VSAL_I0841	-	citrate synthase
787	 39.80	0	937266..937667	+	133	209694421	sdhC	VSAL_I0842	-	succinate dehydrogenase cytochrome b556 subunit
788	 39.94	0	937661..938008	+	115	209694422	sdhD	VSAL_I0843	-	succinate dehydrogenase hydrophobic membrane anchor protein
789	 44.97	+1	938005..939774	+	589	209694423	sdhA	VSAL_I0844	-	succinate dehydrogenase flavoprotein subunit
790	 40.20	0	939789..940502	+	237	209694424	sdhB	VSAL_I0845	-	succinate dehydrogenase iron-sulfur protein
791	 42.53	0	940625..943441	+	938	209694425	sucA	VSAL_I0846	-	2-oxoglutarate dehydrogenase E1 component
792	 41.75	0	943461..944672	+	403	209694426	sucB	VSAL_I0847	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
793	 43.87	+1	944824..945990	+	388	209694427	sucC	VSAL_I0848	-	succinyl-CoA synthetase beta chain
794	 42.38	0	945990..946862	+	290	209694428	sucD	VSAL_I0849	-	succinyl-CoA synthetase alpha chain
795	 39.19	0	946963..947748	-	261	209694429	znuB	VSAL_I0850	-	high-affinity zinc uptake system membrane protein ZnuB
796	 39.17	0	947745..948515	-	256	209694430	znuC	VSAL_I0851	-	high-affinity zinc uptake system atp-binding protein ZnuC
797	 37.02	0	948604..949497	+	297	209694431	znuA	VSAL_I0852	-	high-affinity zinc uptake system protein ZnuA precursor
798	 39.22	0	949494..950834	+	446	209694432	-	VSAL_I0853	-	exported peptidase
799	 38.39	0	950894..951664	-	256	209694433	-	VSAL_I0854	-	hypothetical protein
800	 40.98	0	952023..953303	+	426	209694434	tyrS	VSAL_I0855	-	tyrosyl-tRNA synthetase
801	 42.82	+1	953440..955812	-	790	209694435	-	VSAL_I0856	-	hypothetical protein
802	 42.47	0	956160..957527	-	455	209694436	dcuC	VSAL_I0857	-	anaerobic C4-dicarboxylate transporter DcuC
803	 37.15	0	957853..958560	+	235	209694437	-	VSAL_I0858	-	membrane protein
804	 36.92	0	958628..958822	+	64	209694438	-	VSAL_I0859	-	hypothetical protein
805	 39.36	0	958840..959751	-	303	209694439	metR	VSAL_I0860	-	transcriptional activator MetR
806	 35.94	-1	960370..961251	+	293	209694440	-	VSAL_I0862	-	transposase
807	 44.36	+1	965183..966433	-	416	209694441	glyA	VSAL_I0864	-	serine hydroxymethyltransferase
808	 37.44	0	966748..967356	+	202	209694442	-	VSAL_I0865	-	putative ABC transporter permease
809	 41.59	0	967429..967755	-	108	209694443	-	VSAL_I0866	-	putative lipoprotein
810	 40.16	0	968844..969854	-	336	209694444	dppD	VSAL_I0868	-	dipeptide transport ATP-binding protein DppD
811	 39.50	0	969878..971758	-	626	209694445	-	VSAL_I0869	-	extracellular solute-binding protein
812	 39.98	0	971751..972803	-	350	209694446	yejE	VSAL_I0870	-	inner membrane ABC transporter permease protein
813	 40.43	0	972806..973834	-	342	209694447	yejB	VSAL_I0871	-	inner membrane ABC transporter permease protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.