version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 672 41.20 0 802296..803516 + 406 209694306 iscS VSAL_I0717 - cysteine desulfurase 673 40.21 0 803550..803927 + 125 209694307 - VSAL_I0718 - putative iron-sulphur cluster biosynthesis protein 674 39.81 0 804048..804371 + 107 209694308 iscA VSAL_I0719 - iron-binding protein IscA (iron-sulfur cluster assembly protein) 675 39.34 0 804387..804902 + 171 209694309 hscB VSAL_I0720 - Co-chaperone protein HscB 676 41.26 0 804938..806791 + 617 209694310 hscA VSAL_I0721 - chaperone protein HscA 677 38.94 0 806794..807132 + 112 209694311 fdx VSAL_I0722 - 2Fe-2S ferredoxin 678 37.31 0 807261..807461 + 66 209694312 - VSAL_I0723 - iron-sulfur cluster assembly protein 679 42.19 0 807699..808985 + 428 209694313 pepB VSAL_I0724 - peptidase B (aminopeptidase B) 680 42.30 0 809074..809508 + 144 209694314 ndk VSAL_I0725 - nucleoside diphosphate kinase 681 40.62 0 809739..810890 + 383 209694315 - VSAL_I0726 - hypothetical protein 682 39.37 0 810887..811648 + 253 209694316 - VSAL_I0727 - putative type 4 fimbrial biogenesis protein PilF 683 39.73 0 811638..812528 + 296 209694317 - VSAL_I0728 - hypothetical protein 684 40.13 0 812541..813659 + 372 209694318 ispG VSAL_I0729 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 685 42.20 0 813694..814968 + 424 209694319 hisS VSAL_I0730 - histidyl-tRNA synthetase 686 41.99 0 814980..815591 + 203 209694320 - VSAL_I0731 - putative outer membrane protein 687 41.11 0 815602..816759 + 385 209694321 yfgL VSAL_I0732 - lipoprotein precursor 688 40.39 0 816940..818442 + 500 209694322 - VSAL_I0733 - GTP-binding protein 689 37.56 0 818497..819372 + 291 209694323 - VSAL_I0734 - hypothetical protein 690 38.40 0 819669..819905 + 78 209694324 - VSAL_I0735 - hypothetical protein 691 40.60 0 819907..821241 - 444 209694325 xseA VSAL_I0736 - exodeoxyribonuclease VII large subunit 692 45.15 +1 821451..822914 + 487 209694326 guaB VSAL_I0737a - inosine-5'-monophosphate dehydrogenase 693 41.76 0 823131..824684 + 517 209694327 guaA VSAL_I0738 - GMP synthase [glutamine-hydrolyzing] 694 41.15 0 824963..826522 + 519 209694328 - VSAL_I0739 - putative ion transporter 695 36.64 0 826619..827254 - 211 209694329 - VSAL_I0740 - putative DNA-binding protein 696 40.06 0 827315..828592 - 425 209694330 - VSAL_I0741 - hypothetical protein 697 39.74 0 828610..828999 - 129 209694331 - VSAL_I0742 - putative endoribonuclease L-PSP 698 35.94 -1 830386..831267 - 293 209694332 - VSAL_I0744 - transposase 699 39.74 0 831701..832543 - 280 209694333 yeiG VSAL_I0745 - putative esterase 700 45.08 +1 832820..833968 - 382 209694334 adhC VSAL_I0746 - alcohol dehydrogenase class 3 701 39.40 0 834157..835029 + 290 209694335 - VSAL_I0747 - HTH-type transcriptional regulator, LysR-family 702 44.38 +1 835031..835564 + 177 209694336 tadA VSAL_I0748 - tRNA-specific adenosine deaminase 703 38.99 0 835973..837457 - 494 209694337 - VSAL_I0749 - membrane-bound transglycosylase 704 44.12 +1 837821..841750 + 1309 209694338 purL VSAL_I0750 - phosphoribosylformylglycinamidine synthase 705 37.40 0 841969..842460 + 163 209694339 - VSAL_I0751 - hypothetical protein 706 36.76 0 842457..842660 + 67 209694340 - VSAL_I0752 - hypothetical protein 707 40.94 0 842678..842953 - 91 209694341 - VSAL_I0753 - hypothetical protein 708 38.57 0 843130..843645 + 171 209694342 - VSAL_I0754 - rRNA methylase (SpoU_methylase) 709 37.80 0 843716..844252 + 178 209694343 - VSAL_I0755 - membrane protein 710 41.90 0 844660..844986 + 108 209694344 - VSAL_I0756 - hypothetical protein 711 42.66 +1 845055..847595 - 846 209694345 chiA VSAL_I0757 - endochitinase ChiA 712 41.19 0 847796..848317 + 173 209694346 - VSAL_I0758 - hypothetical protein 713 42.47 0 848387..849481 - 364 209694347 - VSAL_I0759 - hypothetical protein 714 41.72 0 849441..850346 - 301 209694348 rimK VSAL_I0760 - ribosomal protein S6 modification protein 715 40.59 0 850346..850786 - 146 209694349 - VSAL_I0761 - hypothetical protein 716 40.00 0 851281..852645 + 454 209694350 - VSAL_I0762 - sodium-dependent transporter 717 37.78 0 855265..855579 - 104 209694351 - VSAL_I0766 - transposase 718 43.88 +1 855807..856337 - 176 209694352 - VSAL_I0768 - hypothetical protein, putative phage gene 719 44.73 +1 856328..856801 - 157 209694353 - VSAL_I0769 - hypothetical protein, putative phage gene 720 46.84 +2 856805..857263 - 152 209694354 - VSAL_I0770 - hypothetical protein, putative phage gene 721 44.83 +1 857360..858394 - 344 209694355 - VSAL_I0771 - phage major capsid protein 722 45.25 +1 858446..859318 - 290 209694356 - VSAL_I0772 - probable capsid scaffolding protein 723 44.69 +1 859448..861244 + 598 209694357 - VSAL_I0773 - putative bacteriophage terminase 724 30.57 -2 862454..863467 - 337 209694358 - VSAL_I0775 - hypothetical protein, putative phage gene 725 41.01 0 864223..864978 - 251 209694359 - VSAL_I0777 - N-acetylmuramoyl-L-alanine amidase 726 38.57 0 865267..865629 - 120 209694360 - VSAL_I0778 - hypothetical protein, putative phage gene 727 40.94 0 865634..865804 - 56 209694361 - VSAL_I0779 - putative membrane protein, putative phage gene 728 44.86 +1 865839..866237 - 132 209694362 - VSAL_I0780 - putative membrane protein, putative phage gene 729 37.78 0 866373..866687 + 104 209694363 - VSAL_I0781 - transposase 730 36.21 -1 866684..867031 + 115 209694364 - VSAL_I0782 - transposase 731 39.78 0 867103..868590 + 495 209694365 - VSAL_I0783 - transposase 732 40.38 0 870657..871748 - 363 209694366 engD VSAL_I0784 - GTP-dependent nucleic acid-binding protein EngD 733 40.78 0 871768..872358 - 196 209694367 pth VSAL_I0785 - peptidyl-tRNA hydrolase 734 43.84 +1 872539..873537 - 332 209694368 prs VSAL_I0786 - ribose-phosphate pyrophosphokinase 735 39.91 0 873525..874391 - 288 209694369 ispE VSAL_I0787 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 736 38.56 0 874388..874999 - 203 209694370 - VSAL_I0788 - outer-membrane lipoprotein LolB precursor 737 40.57 0 875199..876455 + 418 209694371 hemA VSAL_I0789 - glutamyl-tRNA reductase 738 43.25 +1 876495..877583 + 362 209694372 prfA VSAL_I0790 - peptide chain release factor 1 739 39.79 0 877583..878449 + 288 209694373 hemK VSAL_I0791 - protein methyltransferase HemK 740 37.27 0 878453..878833 + 126 209694374 - VSAL_I0792 - protein SirB, invasion gene expression up-regulator 741 38.27 0 878836..879645 + 269 209694375 - VSAL_I0793 - protein SirB1 742 40.00 0 879657..880511 + 284 209694376 kdsA VSAL_I0794 - 2-dehydro-3-deoxyphosphooctonate aldolase 743 40.82 0 880601..881428 - 275 209694377 cysG VSAL_I0795 - siroheme synthase (Includes: Uroporphyrin-III C-methyltransferase, Precorrin-2 dehydrogenase,Sirohydrochlorin ferrochelatase) 744 41.70 0 881524..882336 - 270 209694378 - VSAL_I0796 - formate/nitrite transporter 745 42.42 0 882434..882763 - 109 209694379 nirD VSAL_I0797 - nitrite reductase (NAD(P)H) small subunit 746 43.81 +1 882766..885342 - 858 209694380 nirB VSAL_I0798 - nitrite reductase (NAD(P)H) large subunit 747 40.75 0 885635..887509 - 624 209694381 - VSAL_I0799 - methyl-accepting chemotaxis protein 748 40.79 0 887932..889593 + 553 209694382 nutA VSAL_I0800 - 5'-nucleotidase precursor 749 38.39 0 889989..890423 - 144 209694383 - VSAL_I0801 - hypothetical protein 750 41.38 0 890523..893231 - 902 209694384 copA VSAL_I0802 - copper-transporting P-type ATPase 751 37.59 0 893319..893717 + 132 209694385 cueR VSAL_I0803 - HTH-type transcriptional regulator CueR (copper export regulator) 752 39.18 0 893742..894596 - 284 209694386 - VSAL_I0804 - thioredoxin 753 38.65 0 894931..895758 - 275 209694387 - VSAL_I0805 - putative exported NAD-or NADP-dependent oxidoreductase 754 37.86 0 895887..896792 - 301 209694388 - VSAL_I0806 - putative NAD dependent epimerase/dehydratase 755 38.66 0 896899..897480 + 193 209694389 yfcE VSAL_I0807 - phosphodiesterase 756 37.82 0 898508..898819 + 103 209694390 - VSAL_I0809 - transposase 757 36.21 -1 898816..899163 + 115 209694391 - VSAL_I0810 - transposase 758 39.65 0 899235..900722 + 495 209694392 - VSAL_I0811 - transposase 759 37.36 0 901288..901833 - 181 209694393 toxS VSAL_I0812 - transmembrane regulatory protein ToxS 760 38.23 0 902909..904807 + 632 209694394 htpG VSAL_I0814 - chaperone protein HtpG (heat shock protein HtpG) 761 41.82 0 905084..905731 + 215 209694395 adk VSAL_I0815 - adenylate kinase 762 38.49 0 905815..906783 + 322 209694396 hemH VSAL_I0816 - ferrochelatase 763 41.26 0 907133..908431 + 432 209694397 tig VSAL_I0817 - trigger factor (TF) 764 40.06 0 908532..909155 + 207 209694398 clpP VSAL_I0818 - ATP-dependent Clp protease proteolytic subunit 765 44.83 +1 910404..911612 + 402 209694399 tnpR VSAL_I0820 - transposase 766 39.72 0 912000..914363 + 787 209694400 lon VSAL_I0821 - ATP-dependent protease LA 767 40.74 0 914503..914799 + 98 209694401 hupB VSAL_I0822 - DNA-binding protein HU-beta 768 38.45 0 915001..916857 + 618 209694402 - VSAL_I0823 - peptidyl-prolyl cis-trans isomerase D 769 31.65 -2 917063..917359 + 98 209694403 - VSAL_I0824 - hypothetical protein 770 40.49 0 917450..918805 - 451 209694404 - VSAL_I0825 - di-/tripeptide transporter 771 33.73 -1 919200..919697 + 165 209694405 rfaH VSAL_I0826 - transcriptional activator RfaH 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0