IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
650	 41.87	0	780377..781735	-	452	209694284	-	VSAL_I0695	-	hypothetical protein
651	 37.43	0	781864..783426	-	520	209694285	-	VSAL_I0696	-	hypothetical protein
652	 36.16	-1	783603..785834	-	743	209694286	-	VSAL_I0697	-	hypothetical protein
653	 37.59	0	785945..786790	-	281	209694287	queF	VSAL_I0698	-	7-cyano-7-deazaguanine reductase
654	 39.34	0	786899..787447	+	182	209694288	syd	VSAL_I0699	-	protein Syd
655	 42.12	0	787551..788324	+	257	209694289	-	VSAL_I0700	-	hypothetical protein
656	 43.20	+1	788386..788841	-	151	209694290	-	VSAL_I0701	-	hypothetical protein
657	 36.67	0	788841..789110	-	89	209694291	-	VSAL_I0702	-	hypothetical protein
658	 40.87	0	790040..791326	+	428	209694292	-	VSAL_I0703	-	PTS system, cellobiose permease IIC component
659	 36.93	0	791444..791749	+	101	209694293	bglE	VSAL_I0704	-	PTS system, cellobiose-specific component IIB
660	 38.09	0	791836..793245	+	469	209694294	pbgA	VSAL_I0705	-	6-phospho-beta-glucosidase
661	 32.16	-2	793275..794210	+	311	209694295	-	VSAL_I0706	-	putative glucokinase
662	 37.65	0	794221..794544	+	107	209694296	bglI	VSAL_I0707	-	phosphotransferase system (PTS) component IIA
663	 34.22	-1	794614..795624	+	336	209694297	-	VSAL_I0708	-	HTH-type transcriptional regulator, LacI family
664	 38.97	0	795907..797184	+	425	209694298	lamB	VSAL_I0709	-	maltoporin precursor (outer membrane protein S)
665	 35.60	-1	797251..797559	-	102	209694299	-	VSAL_I0710	-	hypothetical protein
666	 39.58	0	797562..798602	-	346	209694300	-	VSAL_I0711	-	hypothetical protein
667	 37.69	0	798705..799025	+	106	209694301	-	VSAL_I0712	-	hypothetical protein
668	 39.14	0	799022..799813	+	263	209694302	truC	VSAL_I0713	-	tRNA pseudouridine synthase C
669	 41.17	0	799918..800772	-	284	209694303	suhB	VSAL_I0714	-	inositol-1-monophosphatase
670	 39.51	0	800930..801658	+	242	209694304	yfhQ	VSAL_I0715	-	hypothetical tRNA/rRNA methyltransferase
671	 40.83	0	801764..802270	+	168	209694305	-	VSAL_I0716	-	HTH-type transcriptional regulator
672	 41.20	0	802296..803516	+	406	209694306	iscS	VSAL_I0717	-	cysteine desulfurase
673	 40.21	0	803550..803927	+	125	209694307	-	VSAL_I0718	-	putative iron-sulphur cluster biosynthesis protein
674	 39.81	0	804048..804371	+	107	209694308	iscA	VSAL_I0719	-	iron-binding protein IscA (iron-sulfur cluster assembly protein)
675	 39.34	0	804387..804902	+	171	209694309	hscB	VSAL_I0720	-	Co-chaperone protein HscB
676	 41.26	0	804938..806791	+	617	209694310	hscA	VSAL_I0721	-	chaperone protein HscA
677	 38.94	0	806794..807132	+	112	209694311	fdx	VSAL_I0722	-	2Fe-2S ferredoxin
678	 37.31	0	807261..807461	+	66	209694312	-	VSAL_I0723	-	iron-sulfur cluster assembly protein
679	 42.19	0	807699..808985	+	428	209694313	pepB	VSAL_I0724	-	peptidase B (aminopeptidase B)
680	 42.30	0	809074..809508	+	144	209694314	ndk	VSAL_I0725	-	nucleoside diphosphate kinase
681	 40.62	0	809739..810890	+	383	209694315	-	VSAL_I0726	-	hypothetical protein
682	 39.37	0	810887..811648	+	253	209694316	-	VSAL_I0727	-	putative type 4 fimbrial biogenesis protein PilF
683	 39.73	0	811638..812528	+	296	209694317	-	VSAL_I0728	-	hypothetical protein
684	 40.13	0	812541..813659	+	372	209694318	ispG	VSAL_I0729	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
685	 42.20	0	813694..814968	+	424	209694319	hisS	VSAL_I0730	-	histidyl-tRNA synthetase
686	 41.99	0	814980..815591	+	203	209694320	-	VSAL_I0731	-	putative outer membrane protein
687	 41.11	0	815602..816759	+	385	209694321	yfgL	VSAL_I0732	-	lipoprotein precursor
688	 40.39	0	816940..818442	+	500	209694322	-	VSAL_I0733	-	GTP-binding protein
689	 37.56	0	818497..819372	+	291	209694323	-	VSAL_I0734	-	hypothetical protein
690	 38.40	0	819669..819905	+	78	209694324	-	VSAL_I0735	-	hypothetical protein
691	 40.60	0	819907..821241	-	444	209694325	xseA	VSAL_I0736	-	exodeoxyribonuclease VII large subunit
692	 45.15	+1	821451..822914	+	487	209694326	guaB	VSAL_I0737a	-	inosine-5'-monophosphate dehydrogenase
693	 41.76	0	823131..824684	+	517	209694327	guaA	VSAL_I0738	-	GMP synthase [glutamine-hydrolyzing]
694	 41.15	0	824963..826522	+	519	209694328	-	VSAL_I0739	-	putative ion transporter
695	 36.64	0	826619..827254	-	211	209694329	-	VSAL_I0740	-	putative DNA-binding protein
696	 40.06	0	827315..828592	-	425	209694330	-	VSAL_I0741	-	hypothetical protein
697	 39.74	0	828610..828999	-	129	209694331	-	VSAL_I0742	-	putative endoribonuclease L-PSP
698	 35.94	-1	830386..831267	-	293	209694332	-	VSAL_I0744	-	transposase
699	 39.74	0	831701..832543	-	280	209694333	yeiG	VSAL_I0745	-	putative esterase
700	 45.08	+1	832820..833968	-	382	209694334	adhC	VSAL_I0746	-	alcohol dehydrogenase class 3
701	 39.40	0	834157..835029	+	290	209694335	-	VSAL_I0747	-	HTH-type transcriptional regulator, LysR-family
702	 44.38	+1	835031..835564	+	177	209694336	tadA	VSAL_I0748	-	tRNA-specific adenosine deaminase
703	 38.99	0	835973..837457	-	494	209694337	-	VSAL_I0749	-	membrane-bound transglycosylase
704	 44.12	+1	837821..841750	+	1309	209694338	purL	VSAL_I0750	-	phosphoribosylformylglycinamidine synthase
705	 37.40	0	841969..842460	+	163	209694339	-	VSAL_I0751	-	hypothetical protein
706	 36.76	0	842457..842660	+	67	209694340	-	VSAL_I0752	-	hypothetical protein
707	 40.94	0	842678..842953	-	91	209694341	-	VSAL_I0753	-	hypothetical protein
708	 38.57	0	843130..843645	+	171	209694342	-	VSAL_I0754	-	rRNA methylase (SpoU_methylase)
709	 37.80	0	843716..844252	+	178	209694343	-	VSAL_I0755	-	membrane protein
710	 41.90	0	844660..844986	+	108	209694344	-	VSAL_I0756	-	hypothetical protein
711	 42.66	+1	845055..847595	-	846	209694345	chiA	VSAL_I0757	-	endochitinase ChiA
712	 41.19	0	847796..848317	+	173	209694346	-	VSAL_I0758	-	hypothetical protein
713	 42.47	0	848387..849481	-	364	209694347	-	VSAL_I0759	-	hypothetical protein
714	 41.72	0	849441..850346	-	301	209694348	rimK	VSAL_I0760	-	ribosomal protein S6 modification protein
715	 40.59	0	850346..850786	-	146	209694349	-	VSAL_I0761	-	hypothetical protein
716	 40.00	0	851281..852645	+	454	209694350	-	VSAL_I0762	-	sodium-dependent transporter
717	 37.78	0	855265..855579	-	104	209694351	-	VSAL_I0766	-	transposase
718	 43.88	+1	855807..856337	-	176	209694352	-	VSAL_I0768	-	hypothetical protein, putative phage gene
719	 44.73	+1	856328..856801	-	157	209694353	-	VSAL_I0769	-	hypothetical protein, putative phage gene
720	 46.84	+2	856805..857263	-	152	209694354	-	VSAL_I0770	-	hypothetical protein, putative phage gene
721	 44.83	+1	857360..858394	-	344	209694355	-	VSAL_I0771	-	phage major capsid protein
722	 45.25	+1	858446..859318	-	290	209694356	-	VSAL_I0772	-	probable capsid scaffolding protein
723	 44.69	+1	859448..861244	+	598	209694357	-	VSAL_I0773	-	putative bacteriophage terminase
724	 30.57	-2	862454..863467	-	337	209694358	-	VSAL_I0775	-	hypothetical protein, putative phage gene
725	 41.01	0	864223..864978	-	251	209694359	-	VSAL_I0777	-	N-acetylmuramoyl-L-alanine amidase
726	 38.57	0	865267..865629	-	120	209694360	-	VSAL_I0778	-	hypothetical protein, putative phage gene
727	 40.94	0	865634..865804	-	56	209694361	-	VSAL_I0779	-	putative membrane protein, putative phage gene
728	 44.86	+1	865839..866237	-	132	209694362	-	VSAL_I0780	-	putative membrane protein, putative phage gene
729	 37.78	0	866373..866687	+	104	209694363	-	VSAL_I0781	-	transposase
730	 36.21	-1	866684..867031	+	115	209694364	-	VSAL_I0782	-	transposase
731	 39.78	0	867103..868590	+	495	209694365	-	VSAL_I0783	-	transposase
732	 40.38	0	870657..871748	-	363	209694366	engD	VSAL_I0784	-	GTP-dependent nucleic acid-binding protein EngD
733	 40.78	0	871768..872358	-	196	209694367	pth	VSAL_I0785	-	peptidyl-tRNA hydrolase
734	 43.84	+1	872539..873537	-	332	209694368	prs	VSAL_I0786	-	ribose-phosphate pyrophosphokinase
735	 39.91	0	873525..874391	-	288	209694369	ispE	VSAL_I0787	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
736	 38.56	0	874388..874999	-	203	209694370	-	VSAL_I0788	-	outer-membrane lipoprotein LolB precursor
737	 40.57	0	875199..876455	+	418	209694371	hemA	VSAL_I0789	-	glutamyl-tRNA reductase
738	 43.25	+1	876495..877583	+	362	209694372	prfA	VSAL_I0790	-	peptide chain release factor 1
739	 39.79	0	877583..878449	+	288	209694373	hemK	VSAL_I0791	-	protein methyltransferase HemK
740	 37.27	0	878453..878833	+	126	209694374	-	VSAL_I0792	-	protein SirB, invasion gene expression up-regulator
741	 38.27	0	878836..879645	+	269	209694375	-	VSAL_I0793	-	protein SirB1
742	 40.00	0	879657..880511	+	284	209694376	kdsA	VSAL_I0794	-	2-dehydro-3-deoxyphosphooctonate aldolase
743	 40.82	0	880601..881428	-	275	209694377	cysG	VSAL_I0795	-	siroheme synthase (Includes: Uroporphyrin-III C-methyltransferase, Precorrin-2 dehydrogenase,Sirohydrochlorin ferrochelatase)
744	 41.70	0	881524..882336	-	270	209694378	-	VSAL_I0796	-	formate/nitrite transporter
745	 42.42	0	882434..882763	-	109	209694379	nirD	VSAL_I0797	-	nitrite reductase (NAD(P)H) small subunit
746	 43.81	+1	882766..885342	-	858	209694380	nirB	VSAL_I0798	-	nitrite reductase (NAD(P)H) large subunit
747	 40.75	0	885635..887509	-	624	209694381	-	VSAL_I0799	-	methyl-accepting chemotaxis protein
748	 40.79	0	887932..889593	+	553	209694382	nutA	VSAL_I0800	-	5'-nucleotidase precursor
749	 38.39	0	889989..890423	-	144	209694383	-	VSAL_I0801	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.