version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 608 44.53 +1 723697..724446 + 249 209694242 trmD VSAL_I0651 - tRNA(guanine-N1)methyltransferase 609 43.50 +1 724487..724840 + 117 209694243 rplS VSAL_I0652 - 50S ribosomal protein L19 610 39.66 0 725054..726127 + 357 209694244 aroF VSAL_I0653 - phospho-2-dehydro-3-deoxyheptonate aldolase,Tyr-sensitive 611 38.89 0 726134..727267 + 377 209694245 tyrA VSAL_I0654 - T-protein 612 36.98 0 727315..728328 - 337 209694246 - VSAL_I0655 - putative membrane associated metallopeptidases 613 34.70 -1 728351..728716 - 121 209694247 - VSAL_I0656 - putative signaling protein 614 36.85 0 730675..732609 + 644 209694248 slt VSAL_I0658 - soluble lytic murein transglycosylase precursor 615 39.76 0 732680..733006 + 108 209694249 trpR VSAL_I0659 - trp operon repressor 616 39.08 0 732975..733496 - 173 209694250 - VSAL_I0660 - hypothetical protein 617 36.14 -1 733504..734679 - 391 209694251 pheA VSAL_I0661 - P-protein (includes: chorismate mutase and prephenate dehydratase) 618 40.50 0 734792..735154 - 120 209694252 raiA VSAL_I0662 - ribosome-associated inhibitor A 619 39.19 0 735514..736281 - 255 209694253 - VSAL_I0663 - outer membrane protein 620 43.69 +1 736402..737376 + 324 209694254 rluD VSAL_I0664 - ribosomal large subunit pseudouridine synthase D 621 38.23 0 737376..738110 + 244 209694255 - VSAL_I0665 - hypothetical protein 622 36.50 0 738205..740790 + 861 209694256 clpB VSAL_I0666 - chaperone ClpB (heat-shock protein) 623 34.56 -1 746868..747275 - 135 209694257 - VSAL_I0667 - hypothetical protein 624 33.73 -1 747265..748509 - 414 209694258 - VSAL_I0668 - hypothetical protein 625 32.86 -2 748509..749141 - 210 209694259 - VSAL_I0669 - hypothetical protein 626 35.85 -1 749107..749622 - 171 209694260 - VSAL_I0670 - hypothetical protein 627 33.80 -1 749726..750157 + 143 209694261 - VSAL_I0671 - hypothetical protein 628 39.24 0 750194..751345 - 383 209694262 - VSAL_I0672 - putative chromate transporter 629 34.39 -1 752403..752591 - 62 209694263 - VSAL_I0674 - hypothetical protein 630 42.07 0 752758..753810 - 350 209694264 dapD VSAL_I0675 - tetrahydrodipicolinate succinylase 631 38.83 0 754187..754477 - 96 209694265 - VSAL_I0676 - hypothetical protein 632 37.25 0 754689..755327 + 212 209694266 - VSAL_I0677 - hypothetical protein 633 37.79 0 755360..756235 - 291 209694267 - VSAL_I0678 - HTH-type transciptional regulator, LysR-family 634 40.91 0 756371..757360 + 329 209694268 - VSAL_I0679 - putative C4-dicarboxylate/malic acid transport protein 635 40.01 0 757441..760824 + 1127 209694269 recC VSAL_I0680 - exodeoxyribonuclease V gamma chain 636 40.58 0 761158..764784 + 1208 209694270 recB VSAL_I0681 - exodeoxyribonuclease V beta chain 637 43.01 +1 764777..766801 + 674 209694271 recD VSAL_I0682 - exodeoxyribonuclease V alpha chain 638 42.17 0 767012..768346 - 444 209694272 dcuB VSAL_I0683 - anaerobic c4-dicarboxylate transporter DcuB 639 38.76 0 768445..769827 - 460 209694273 argH VSAL_I0684 - argininosuccinate lyase 640 42.07 0 770708..772057 - 449 209694274 argA VSAL_I0685 - amino-acid acetyltransferase 641 37.21 0 772199..772585 + 128 209694275 - VSAL_I0686 - hypothetical protein 642 39.06 0 772764..773864 + 366 209694276 mltA VSAL_I0687 - membrane-bound lytic murein transglycosylase A precursor 643 40.93 0 773959..774774 + 271 209694277 - VSAL_I0688 - hypothetical protein 644 39.95 0 774899..775336 - 145 209694278 - VSAL_I0689 - conserved hypothetical protein, SufE-related protein 645 40.64 0 775361..776578 - 405 209694279 sufS VSAL_I0690 - cysteine desulfurase 646 41.14 0 776939..777847 + 302 209694280 gcvA VSAL_I0691 - glycine cleavage system transcriptional activator 647 41.09 0 777840..778226 + 128 209694281 - VSAL_I0692 - membrane protein 648 38.64 0 778223..779314 + 363 209694282 mtfA VSAL_I0693 - putative RNA 2'-O-ribose methyltransferase mtfA 649 41.09 0 779521..780294 - 257 209694283 exo VSAL_I0694 - 5'-3' exonuclease 650 41.87 0 780377..781735 - 452 209694284 - VSAL_I0695 - hypothetical protein 651 37.43 0 781864..783426 - 520 209694285 - VSAL_I0696 - hypothetical protein 652 36.16 -1 783603..785834 - 743 209694286 - VSAL_I0697 - hypothetical protein 653 37.59 0 785945..786790 - 281 209694287 queF VSAL_I0698 - 7-cyano-7-deazaguanine reductase 654 39.34 0 786899..787447 + 182 209694288 syd VSAL_I0699 - protein Syd 655 42.12 0 787551..788324 + 257 209694289 - VSAL_I0700 - hypothetical protein 656 43.20 +1 788386..788841 - 151 209694290 - VSAL_I0701 - hypothetical protein 657 36.67 0 788841..789110 - 89 209694291 - VSAL_I0702 - hypothetical protein 658 40.87 0 790040..791326 + 428 209694292 - VSAL_I0703 - PTS system, cellobiose permease IIC component 659 36.93 0 791444..791749 + 101 209694293 bglE VSAL_I0704 - PTS system, cellobiose-specific component IIB 660 38.09 0 791836..793245 + 469 209694294 pbgA VSAL_I0705 - 6-phospho-beta-glucosidase 661 32.16 -2 793275..794210 + 311 209694295 - VSAL_I0706 - putative glucokinase 662 37.65 0 794221..794544 + 107 209694296 bglI VSAL_I0707 - phosphotransferase system (PTS) component IIA 663 34.22 -1 794614..795624 + 336 209694297 - VSAL_I0708 - HTH-type transcriptional regulator, LacI family 664 38.97 0 795907..797184 + 425 209694298 lamB VSAL_I0709 - maltoporin precursor (outer membrane protein S) 665 35.60 -1 797251..797559 - 102 209694299 - VSAL_I0710 - hypothetical protein 666 39.58 0 797562..798602 - 346 209694300 - VSAL_I0711 - hypothetical protein 667 37.69 0 798705..799025 + 106 209694301 - VSAL_I0712 - hypothetical protein 668 39.14 0 799022..799813 + 263 209694302 truC VSAL_I0713 - tRNA pseudouridine synthase C 669 41.17 0 799918..800772 - 284 209694303 suhB VSAL_I0714 - inositol-1-monophosphatase 670 39.51 0 800930..801658 + 242 209694304 yfhQ VSAL_I0715 - hypothetical tRNA/rRNA methyltransferase 671 40.83 0 801764..802270 + 168 209694305 - VSAL_I0716 - HTH-type transcriptional regulator 672 41.20 0 802296..803516 + 406 209694306 iscS VSAL_I0717 - cysteine desulfurase 673 40.21 0 803550..803927 + 125 209694307 - VSAL_I0718 - putative iron-sulphur cluster biosynthesis protein 674 39.81 0 804048..804371 + 107 209694308 iscA VSAL_I0719 - iron-binding protein IscA (iron-sulfur cluster assembly protein) 675 39.34 0 804387..804902 + 171 209694309 hscB VSAL_I0720 - Co-chaperone protein HscB 676 41.26 0 804938..806791 + 617 209694310 hscA VSAL_I0721 - chaperone protein HscA 677 38.94 0 806794..807132 + 112 209694311 fdx VSAL_I0722 - 2Fe-2S ferredoxin 678 37.31 0 807261..807461 + 66 209694312 - VSAL_I0723 - iron-sulfur cluster assembly protein 679 42.19 0 807699..808985 + 428 209694313 pepB VSAL_I0724 - peptidase B (aminopeptidase B) 680 42.30 0 809074..809508 + 144 209694314 ndk VSAL_I0725 - nucleoside diphosphate kinase 681 40.62 0 809739..810890 + 383 209694315 - VSAL_I0726 - hypothetical protein 682 39.37 0 810887..811648 + 253 209694316 - VSAL_I0727 - putative type 4 fimbrial biogenesis protein PilF 683 39.73 0 811638..812528 + 296 209694317 - VSAL_I0728 - hypothetical protein 684 40.13 0 812541..813659 + 372 209694318 ispG VSAL_I0729 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 685 42.20 0 813694..814968 + 424 209694319 hisS VSAL_I0730 - histidyl-tRNA synthetase 686 41.99 0 814980..815591 + 203 209694320 - VSAL_I0731 - putative outer membrane protein 687 41.11 0 815602..816759 + 385 209694321 yfgL VSAL_I0732 - lipoprotein precursor 688 40.39 0 816940..818442 + 500 209694322 - VSAL_I0733 - GTP-binding protein 689 37.56 0 818497..819372 + 291 209694323 - VSAL_I0734 - hypothetical protein 690 38.40 0 819669..819905 + 78 209694324 - VSAL_I0735 - hypothetical protein 691 40.60 0 819907..821241 - 444 209694325 xseA VSAL_I0736 - exodeoxyribonuclease VII large subunit 692 45.15 +1 821451..822914 + 487 209694326 guaB VSAL_I0737a - inosine-5'-monophosphate dehydrogenase 693 41.76 0 823131..824684 + 517 209694327 guaA VSAL_I0738 - GMP synthase [glutamine-hydrolyzing] 694 41.15 0 824963..826522 + 519 209694328 - VSAL_I0739 - putative ion transporter 695 36.64 0 826619..827254 - 211 209694329 - VSAL_I0740 - putative DNA-binding protein 696 40.06 0 827315..828592 - 425 209694330 - VSAL_I0741 - hypothetical protein 697 39.74 0 828610..828999 - 129 209694331 - VSAL_I0742 - putative endoribonuclease L-PSP 698 35.94 -1 830386..831267 - 293 209694332 - VSAL_I0744 - transposase 699 39.74 0 831701..832543 - 280 209694333 yeiG VSAL_I0745 - putative esterase 700 45.08 +1 832820..833968 - 382 209694334 adhC VSAL_I0746 - alcohol dehydrogenase class 3 701 39.40 0 834157..835029 + 290 209694335 - VSAL_I0747 - HTH-type transcriptional regulator, LysR-family 702 44.38 +1 835031..835564 + 177 209694336 tadA VSAL_I0748 - tRNA-specific adenosine deaminase 703 38.99 0 835973..837457 - 494 209694337 - VSAL_I0749 - membrane-bound transglycosylase 704 44.12 +1 837821..841750 + 1309 209694338 purL VSAL_I0750 - phosphoribosylformylglycinamidine synthase 705 37.40 0 841969..842460 + 163 209694339 - VSAL_I0751 - hypothetical protein 706 36.76 0 842457..842660 + 67 209694340 - VSAL_I0752 - hypothetical protein 707 40.94 0 842678..842953 - 91 209694341 - VSAL_I0753 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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