version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 575 39.30 0 679393..680700 + 435 209694209 - VSAL_I0617 - transposase 576 40.00 0 681014..681223 + 69 209694210 - VSAL_I0618 - hypothetical protein 577 42.86 +1 681508..682284 + 258 209694211 deoC VSAL_I0619 - deoxyribose-phosphate aldolase 578 42.19 0 682400..683731 + 443 209694212 deoA VSAL_I0620 - thymidine phosphorylase 579 42.51 0 683742..684962 + 406 209694213 deoB VSAL_I0621 - phosphopentomutase 580 37.33 0 685836..686435 - 199 209694214 smp VSAL_I0623 - peripheral membrane protein 581 40.45 0 686566..687534 + 322 209694215 serB VSAL_I0624 - phosphoserine phosphatase 582 37.81 0 687588..689933 - 781 209694216 - VSAL_I0625 - hypothetical protein 583 43.12 +1 690051..691430 + 459 209694217 radA VSAL_I0626 - DNA repair protein RadA (dna repair protein sms) 584 43.31 +1 691624..693708 + 694 209694218 fusA VSAL_I0627 - elongation factor G (EF-G) 585 35.90 -1 693819..694052 - 77 209694219 - VSAL_I0628 - hypothetical protein 586 39.20 0 694165..695442 - 425 209694220 codA VSAL_I0629 - cytosine deaminase 587 42.26 0 695453..696706 - 417 209694221 codB VSAL_I0630 - cytosine permease 588 38.64 0 697136..698812 - 558 209694222 - VSAL_I0631 - putative AMP-binding acetyl-CoA synthetase 589 41.71 0 699029..701596 - 855 209694223 mutS VSAL_I0632 - DNA mismatch repair protein MutS 590 42.77 +1 701705..702202 + 165 209694224 - VSAL_I0633 - putative competence-damaged protein 591 39.66 0 702343..703386 + 347 209694225 recA VSAL_I0634 - protein RecA (recombinase A) 592 42.28 0 703629..706211 + 860 209694226 alaS VSAL_I0635 - alanyl-tRNA synthetase 593 37.26 0 706221..707390 + 389 209694227 lysC VSAL_I0636 - aspartokinase 2 594 43.28 +1 707472..707672 + 66 209694228 csrA VSAL_I0637 - carbon storage regulator 595 40.87 0 709310..709561 + 83 209694229 - VSAL_I0638 - oxaloacetate decarboxylase 1, subunit gamma 596 41.50 0 709599..711386 + 595 209694230 - VSAL_I0639 - oxaloacetate decarboxylase 2, subunit alpha 597 41.11 0 711398..712528 + 376 209694231 - VSAL_I0640 - oxaloacetate decarboxylase, beta subunit 598 38.66 0 712625..713056 + 143 209694232 - VSAL_I0641 - inner membrane protein 599 39.08 0 713065..715917 + 950 209694233 - VSAL_I0642 - exported pepdidase, putative zinc protease 600 38.31 0 716044..717609 + 521 209694234 gshA VSAL_I0643 - glutamate--cysteine ligase 601 40.83 0 717676..718275 + 199 209694235 - VSAL_I0644 - putative lipoprotein 602 36.42 0 718309..718827 + 172 209694236 luxS VSAL_I0645 - S-ribosylhomocysteine lyase 603 38.84 0 718895..720166 - 423 209694237 - VSAL_I0646 - putative transport protein 604 35.35 -1 720268..721062 - 264 209694238 - VSAL_I0647 - inner membrane protein, putative cytochrome c assembly protein 605 40.69 0 721225..722610 + 461 209694239 ffh VSAL_I0648 - signal recognition particle protein 606 42.96 +1 722830..723120 + 96 209694240 rpsP VSAL_I0649 - 30S ribosomal protein S16 607 40.34 0 723147..723674 + 175 209694241 rimM VSAL_I0650 - 16S rRNA processing protein RimM 608 44.53 +1 723697..724446 + 249 209694242 trmD VSAL_I0651 - tRNA(guanine-N1)methyltransferase 609 43.50 +1 724487..724840 + 117 209694243 rplS VSAL_I0652 - 50S ribosomal protein L19 610 39.66 0 725054..726127 + 357 209694244 aroF VSAL_I0653 - phospho-2-dehydro-3-deoxyheptonate aldolase,Tyr-sensitive 611 38.89 0 726134..727267 + 377 209694245 tyrA VSAL_I0654 - T-protein 612 36.98 0 727315..728328 - 337 209694246 - VSAL_I0655 - putative membrane associated metallopeptidases 613 34.70 -1 728351..728716 - 121 209694247 - VSAL_I0656 - putative signaling protein 614 36.85 0 730675..732609 + 644 209694248 slt VSAL_I0658 - soluble lytic murein transglycosylase precursor 615 39.76 0 732680..733006 + 108 209694249 trpR VSAL_I0659 - trp operon repressor 616 39.08 0 732975..733496 - 173 209694250 - VSAL_I0660 - hypothetical protein 617 36.14 -1 733504..734679 - 391 209694251 pheA VSAL_I0661 - P-protein (includes: chorismate mutase and prephenate dehydratase) 618 40.50 0 734792..735154 - 120 209694252 raiA VSAL_I0662 - ribosome-associated inhibitor A 619 39.19 0 735514..736281 - 255 209694253 - VSAL_I0663 - outer membrane protein 620 43.69 +1 736402..737376 + 324 209694254 rluD VSAL_I0664 - ribosomal large subunit pseudouridine synthase D 621 38.23 0 737376..738110 + 244 209694255 - VSAL_I0665 - hypothetical protein 622 36.50 0 738205..740790 + 861 209694256 clpB VSAL_I0666 - chaperone ClpB (heat-shock protein) 623 34.56 -1 746868..747275 - 135 209694257 - VSAL_I0667 - hypothetical protein 624 33.73 -1 747265..748509 - 414 209694258 - VSAL_I0668 - hypothetical protein 625 32.86 -2 748509..749141 - 210 209694259 - VSAL_I0669 - hypothetical protein 626 35.85 -1 749107..749622 - 171 209694260 - VSAL_I0670 - hypothetical protein 627 33.80 -1 749726..750157 + 143 209694261 - VSAL_I0671 - hypothetical protein 628 39.24 0 750194..751345 - 383 209694262 - VSAL_I0672 - putative chromate transporter 629 34.39 -1 752403..752591 - 62 209694263 - VSAL_I0674 - hypothetical protein 630 42.07 0 752758..753810 - 350 209694264 dapD VSAL_I0675 - tetrahydrodipicolinate succinylase 631 38.83 0 754187..754477 - 96 209694265 - VSAL_I0676 - hypothetical protein 632 37.25 0 754689..755327 + 212 209694266 - VSAL_I0677 - hypothetical protein 633 37.79 0 755360..756235 - 291 209694267 - VSAL_I0678 - HTH-type transciptional regulator, LysR-family 634 40.91 0 756371..757360 + 329 209694268 - VSAL_I0679 - putative C4-dicarboxylate/malic acid transport protein 635 40.01 0 757441..760824 + 1127 209694269 recC VSAL_I0680 - exodeoxyribonuclease V gamma chain 636 40.58 0 761158..764784 + 1208 209694270 recB VSAL_I0681 - exodeoxyribonuclease V beta chain 637 43.01 +1 764777..766801 + 674 209694271 recD VSAL_I0682 - exodeoxyribonuclease V alpha chain 638 42.17 0 767012..768346 - 444 209694272 dcuB VSAL_I0683 - anaerobic c4-dicarboxylate transporter DcuB 639 38.76 0 768445..769827 - 460 209694273 argH VSAL_I0684 - argininosuccinate lyase 640 42.07 0 770708..772057 - 449 209694274 argA VSAL_I0685 - amino-acid acetyltransferase 641 37.21 0 772199..772585 + 128 209694275 - VSAL_I0686 - hypothetical protein 642 39.06 0 772764..773864 + 366 209694276 mltA VSAL_I0687 - membrane-bound lytic murein transglycosylase A precursor 643 40.93 0 773959..774774 + 271 209694277 - VSAL_I0688 - hypothetical protein 644 39.95 0 774899..775336 - 145 209694278 - VSAL_I0689 - conserved hypothetical protein, SufE-related protein 645 40.64 0 775361..776578 - 405 209694279 sufS VSAL_I0690 - cysteine desulfurase 646 41.14 0 776939..777847 + 302 209694280 gcvA VSAL_I0691 - glycine cleavage system transcriptional activator 647 41.09 0 777840..778226 + 128 209694281 - VSAL_I0692 - membrane protein 648 38.64 0 778223..779314 + 363 209694282 mtfA VSAL_I0693 - putative RNA 2'-O-ribose methyltransferase mtfA 649 41.09 0 779521..780294 - 257 209694283 exo VSAL_I0694 - 5'-3' exonuclease 650 41.87 0 780377..781735 - 452 209694284 - VSAL_I0695 - hypothetical protein 651 37.43 0 781864..783426 - 520 209694285 - VSAL_I0696 - hypothetical protein 652 36.16 -1 783603..785834 - 743 209694286 - VSAL_I0697 - hypothetical protein 653 37.59 0 785945..786790 - 281 209694287 queF VSAL_I0698 - 7-cyano-7-deazaguanine reductase 654 39.34 0 786899..787447 + 182 209694288 syd VSAL_I0699 - protein Syd 655 42.12 0 787551..788324 + 257 209694289 - VSAL_I0700 - hypothetical protein 656 43.20 +1 788386..788841 - 151 209694290 - VSAL_I0701 - hypothetical protein 657 36.67 0 788841..789110 - 89 209694291 - VSAL_I0702 - hypothetical protein 658 40.87 0 790040..791326 + 428 209694292 - VSAL_I0703 - PTS system, cellobiose permease IIC component 659 36.93 0 791444..791749 + 101 209694293 bglE VSAL_I0704 - PTS system, cellobiose-specific component IIB 660 38.09 0 791836..793245 + 469 209694294 pbgA VSAL_I0705 - 6-phospho-beta-glucosidase 661 32.16 -2 793275..794210 + 311 209694295 - VSAL_I0706 - putative glucokinase 662 37.65 0 794221..794544 + 107 209694296 bglI VSAL_I0707 - phosphotransferase system (PTS) component IIA 663 34.22 -1 794614..795624 + 336 209694297 - VSAL_I0708 - HTH-type transcriptional regulator, LacI family 664 38.97 0 795907..797184 + 425 209694298 lamB VSAL_I0709 - maltoporin precursor (outer membrane protein S) 665 35.60 -1 797251..797559 - 102 209694299 - VSAL_I0710 - hypothetical protein 666 39.58 0 797562..798602 - 346 209694300 - VSAL_I0711 - hypothetical protein 667 37.69 0 798705..799025 + 106 209694301 - VSAL_I0712 - hypothetical protein 668 39.14 0 799022..799813 + 263 209694302 truC VSAL_I0713 - tRNA pseudouridine synthase C 669 41.17 0 799918..800772 - 284 209694303 suhB VSAL_I0714 - inositol-1-monophosphatase 670 39.51 0 800930..801658 + 242 209694304 yfhQ VSAL_I0715 - hypothetical tRNA/rRNA methyltransferase 671 40.83 0 801764..802270 + 168 209694305 - VSAL_I0716 - HTH-type transcriptional regulator 672 41.20 0 802296..803516 + 406 209694306 iscS VSAL_I0717 - cysteine desulfurase 673 40.21 0 803550..803927 + 125 209694307 - VSAL_I0718 - putative iron-sulphur cluster biosynthesis protein 674 39.81 0 804048..804371 + 107 209694308 iscA VSAL_I0719 - iron-binding protein IscA (iron-sulfur cluster assembly protein) 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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