IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
526	 41.26	0	624417..625085	-	222	209694160	mutH	VSAL_I0568	-	DNA mismatch repair protein MutH
527	 41.33	0	625679..626191	+	170	209694161	nudH	VSAL_I0569	-	(di)nucleoside polyphosphate hydrolase
528	 39.61	0	626228..628489	+	753	209694162	ptsP	VSAL_I0570	-	phosphoenolpyruvate-protein phosphotransferase PtsP
529	 40.05	0	628490..629293	+	267	209694163	-	VSAL_I0571	-	integral membrane protein
530	 40.14	0	629304..630155	+	283	209694164	lgt	VSAL_I0572	-	prolipoprotein diacylglyceryl transferase
531	 39.51	0	630234..631091	+	285	209694165	thyA	VSAL_I0573	-	thymidylate synthase
532	 41.01	0	631160..632305	-	381	209694166	nptA	VSAL_I0574	-	sodium-dependent phosphate pump
533	 37.26	0	632642..633583	+	313	209694167	nhaR	VSAL_I0575	-	transcriptional activator protein NhaR (sodium/proton antiporter regulator protein)
534	 33.97	-1	633619..633930	+	103	209694168	hlyU	VSAL_I0576	-	transcriptional activator HlyU
535	 44.83	+1	634052..634312	-	86	209694169	rpsT	VSAL_I0577	-	30S ribosomal protein S20
536	 39.29	0	634534..636093	+	519	209694170	mviN	VSAL_I0578	-	virulence factor MviN homolog
537	 39.23	0	636184..637116	+	310	209694171	ribF	VSAL_I0579	-	riboflavin biosynthesis protein RibF
538	 42.08	0	637153..640011	+	952	209694172	ileS	VSAL_I0580	-	isoleucyl-tRNA synthetase
539	 40.50	0	640011..640526	+	171	209694173	lspA	VSAL_I0581	-	lipoprotein signal peptidase
540	 37.96	0	640621..641052	+	143	209694174	fkpB	VSAL_I0582	-	FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase
541	 40.53	0	641077..642021	+	314	209694175	ispH	VSAL_I0583	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
542	 42.10	0	642091..642900	+	269	209694176	dapB	VSAL_I0584	-	dihydrodipicolinate reductase
543	 44.42	+1	643459..644613	+	384	209694177	carA	VSAL_I0585	-	carbamoyl-phosphate synthase small chain
544	 43.86	+1	644631..647861	+	1076	209694178	carB	VSAL_I0586	-	carbamoyl-phosphate synthase large chain
545	 39.01	0	647963..649372	-	469	209694179	dacB	VSAL_I0587	-	penicillin-binding protein 4 precursor
546	 42.12	0	649514..650515	-	333	209694180	ompU	VSAL_I0588	-	major outer membrane protein OmpU
547	 39.24	0	651098..651571	+	157	209694181	greA	VSAL_I0589	-	transcription elongation factor GreA
548	 35.69	-1	651666..651962	-	98	209694182	-	VSAL_I0590	-	putative RNA-binding protein
549	 41.11	0	652081..652710	+	209	209694183	rrmJ	VSAL_I0591	-	ribosomal RNA large subunit methyltransferase J (cell division protein FtsJ)
550	 41.70	0	652796..654778	+	660	209694184	hflB	VSAL_I0592	-	cell division protein FtsH
551	 40.17	0	654843..655676	+	277	209694185	folP	VSAL_I0593	-	dihydropteroate synthase
552	 40.73	0	655733..657070	+	445	209694186	glmM	VSAL_I0594	-	phosphoglucosamine mutase
553	 40.54	0	657222..657554	+	110	209694187	secG	VSAL_I0595	-	protein-export membrane protein SecG (preprotein translocase band subunit)
554	 39.25	0	657962..658417	+	151	209694188	-	VSAL_I0596	-	hypothetical protein
555	 41.13	0	658434..659921	+	495	209694189	nusA	VSAL_I0597	-	transcription elongation protein NusA
556	 42.71	+1	659945..662620	+	891	209694190	-	VSAL_I0598	-	translation initiation factor IF-2
557	 41.67	0	662734..663141	+	135	209694191	rbfA	VSAL_I0599	-	ribosome-binding factor A
558	 41.07	0	663141..664097	+	318	209694192	truB	VSAL_I0600	-	tRNA pseudouridine synthase B
559	 42.22	0	664260..664529	+	89	209694193	rpsO	VSAL_I0601	-	30S ribosomal protein S15
560	 44.23	+1	664832..666988	+	718	209694194	pnp	VSAL_I0602	-	polyribonucleotide nucleotidyltransferase
561	 36.79	0	667099..668082	+	327	209694195	nlpI	VSAL_I0603	-	lipoprotein NlpI precursor
562	 37.09	0	668165..669043	-	292	209694196	-	VSAL_I0604	-	putative peptidase
563	 41.42	0	669053..670054	-	333	209694197	-	VSAL_I0605	-	putative peptidase
564	 37.50	0	670270..672309	-	679	209694198	-	VSAL_I0606	-	putative signaling protein
565	 36.22	-1	672524..673042	+	172	209694199	-	VSAL_I0607	-	hypothetical protein
566	 39.29	0	673032..673535	+	167	209694200	-	VSAL_I0608	-	putative acetyltransferase
567	 32.08	-2	673678..673836	+	52	209694201	-	VSAL_I0609	-	hypothetical protein
568	 33.73	-1	673857..674105	-	82	209694202	-	VSAL_I0610	-	hypothetical protein
569	 38.06	0	674232..674633	+	133	209694203	-	VSAL_I0611	-	DNA polymerase III, psi subunit
570	 38.26	0	674623..675069	+	148	209694204	rimI	VSAL_I0612	-	ribosomal-protein-alanine acetyltransferase
571	 42.88	+1	675187..676767	+	526	209694205	prfC	VSAL_I0613	-	peptide chain release factor 3 (RF-3)
572	 36.05	-1	676846..676992	+	48	209694206	-	VSAL_I0614	-	hypothetical protein
573	 36.55	0	676973..677749	+	258	209694207	-	VSAL_I0615	-	putative DNase
574	 43.61	+1	677973..679256	+	427	209694208	-	VSAL_I0616	-	putative sodium-dependent nucleoside transporter protein
575	 39.30	0	679393..680700	+	435	209694209	-	VSAL_I0617	-	transposase
576	 40.00	0	681014..681223	+	69	209694210	-	VSAL_I0618	-	hypothetical protein
577	 42.86	+1	681508..682284	+	258	209694211	deoC	VSAL_I0619	-	deoxyribose-phosphate aldolase
578	 42.19	0	682400..683731	+	443	209694212	deoA	VSAL_I0620	-	thymidine phosphorylase
579	 42.51	0	683742..684962	+	406	209694213	deoB	VSAL_I0621	-	phosphopentomutase
580	 37.33	0	685836..686435	-	199	209694214	smp	VSAL_I0623	-	peripheral membrane protein
581	 40.45	0	686566..687534	+	322	209694215	serB	VSAL_I0624	-	phosphoserine phosphatase
582	 37.81	0	687588..689933	-	781	209694216	-	VSAL_I0625	-	hypothetical protein
583	 43.12	+1	690051..691430	+	459	209694217	radA	VSAL_I0626	-	DNA repair protein RadA (dna repair protein sms)
584	 43.31	+1	691624..693708	+	694	209694218	fusA	VSAL_I0627	-	elongation factor G (EF-G)
585	 35.90	-1	693819..694052	-	77	209694219	-	VSAL_I0628	-	hypothetical protein
586	 39.20	0	694165..695442	-	425	209694220	codA	VSAL_I0629	-	cytosine deaminase
587	 42.26	0	695453..696706	-	417	209694221	codB	VSAL_I0630	-	cytosine permease
588	 38.64	0	697136..698812	-	558	209694222	-	VSAL_I0631	-	putative AMP-binding acetyl-CoA synthetase
589	 41.71	0	699029..701596	-	855	209694223	mutS	VSAL_I0632	-	DNA mismatch repair protein MutS
590	 42.77	+1	701705..702202	+	165	209694224	-	VSAL_I0633	-	putative competence-damaged protein
591	 39.66	0	702343..703386	+	347	209694225	recA	VSAL_I0634	-	protein RecA (recombinase A)
592	 42.28	0	703629..706211	+	860	209694226	alaS	VSAL_I0635	-	alanyl-tRNA synthetase
593	 37.26	0	706221..707390	+	389	209694227	lysC	VSAL_I0636	-	aspartokinase 2
594	 43.28	+1	707472..707672	+	66	209694228	csrA	VSAL_I0637	-	carbon storage regulator
595	 40.87	0	709310..709561	+	83	209694229	-	VSAL_I0638	-	oxaloacetate decarboxylase 1, subunit gamma
596	 41.50	0	709599..711386	+	595	209694230	-	VSAL_I0639	-	oxaloacetate decarboxylase 2, subunit alpha
597	 41.11	0	711398..712528	+	376	209694231	-	VSAL_I0640	-	oxaloacetate decarboxylase, beta subunit
598	 38.66	0	712625..713056	+	143	209694232	-	VSAL_I0641	-	inner membrane protein
599	 39.08	0	713065..715917	+	950	209694233	-	VSAL_I0642	-	exported pepdidase, putative zinc protease
600	 38.31	0	716044..717609	+	521	209694234	gshA	VSAL_I0643	-	glutamate--cysteine ligase
601	 40.83	0	717676..718275	+	199	209694235	-	VSAL_I0644	-	putative lipoprotein
602	 36.42	0	718309..718827	+	172	209694236	luxS	VSAL_I0645	-	S-ribosylhomocysteine lyase
603	 38.84	0	718895..720166	-	423	209694237	-	VSAL_I0646	-	putative transport protein
604	 35.35	-1	720268..721062	-	264	209694238	-	VSAL_I0647	-	inner membrane protein, putative cytochrome c assembly protein
605	 40.69	0	721225..722610	+	461	209694239	ffh	VSAL_I0648	-	signal recognition particle protein
606	 42.96	+1	722830..723120	+	96	209694240	rpsP	VSAL_I0649	-	30S ribosomal protein S16
607	 40.34	0	723147..723674	+	175	209694241	rimM	VSAL_I0650	-	16S rRNA processing protein RimM
608	 44.53	+1	723697..724446	+	249	209694242	trmD	VSAL_I0651	-	tRNA(guanine-N1)methyltransferase
609	 43.50	+1	724487..724840	+	117	209694243	rplS	VSAL_I0652	-	50S ribosomal protein L19
610	 39.66	0	725054..726127	+	357	209694244	aroF	VSAL_I0653	-	phospho-2-dehydro-3-deoxyheptonate aldolase,Tyr-sensitive
611	 38.89	0	726134..727267	+	377	209694245	tyrA	VSAL_I0654	-	T-protein
612	 36.98	0	727315..728328	-	337	209694246	-	VSAL_I0655	-	putative membrane associated metallopeptidases
613	 34.70	-1	728351..728716	-	121	209694247	-	VSAL_I0656	-	putative signaling protein
614	 36.85	0	730675..732609	+	644	209694248	slt	VSAL_I0658	-	soluble lytic murein transglycosylase precursor
615	 39.76	0	732680..733006	+	108	209694249	trpR	VSAL_I0659	-	trp operon repressor
616	 39.08	0	732975..733496	-	173	209694250	-	VSAL_I0660	-	hypothetical protein
617	 36.14	-1	733504..734679	-	391	209694251	pheA	VSAL_I0661	-	P-protein (includes: chorismate mutase and prephenate dehydratase)
618	 40.50	0	734792..735154	-	120	209694252	raiA	VSAL_I0662	-	ribosome-associated inhibitor A
619	 39.19	0	735514..736281	-	255	209694253	-	VSAL_I0663	-	outer membrane protein
620	 43.69	+1	736402..737376	+	324	209694254	rluD	VSAL_I0664	-	ribosomal large subunit pseudouridine synthase D
621	 38.23	0	737376..738110	+	244	209694255	-	VSAL_I0665	-	hypothetical protein
622	 36.50	0	738205..740790	+	861	209694256	clpB	VSAL_I0666	-	chaperone ClpB (heat-shock protein)
623	 34.56	-1	746868..747275	-	135	209694257	-	VSAL_I0667	-	hypothetical protein
624	 33.73	-1	747265..748509	-	414	209694258	-	VSAL_I0668	-	hypothetical protein
625	 32.86	-2	748509..749141	-	210	209694259	-	VSAL_I0669	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.