version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 501 43.83 +1 596137..596955 - 272 209694135 proC VSAL_I0542 - pyrroline-5-carboxylate reductase 502 38.80 0 596942..597709 - 255 209694136 - VSAL_I0543 - membrane protein, related to K+ transport 503 40.85 0 597733..598770 + 345 209694137 pilT VSAL_I0544 - twitching mobility protein PilT, type II/IV secretion system protein 504 41.10 0 598773..599879 + 368 209694138 pilU VSAL_I0545 - twitching motility protein PilU, type II/IV secretion system protein 505 41.78 0 599983..600408 - 141 209694139 yqgF VSAL_I0546 - hypothetical protein 506 40.43 0 600405..600968 - 187 209694140 - VSAL_I0547 - hypothetical protein 507 41.34 0 601042..602028 - 328 209694141 gshB VSAL_I0548 - glutathione synthetase 508 39.21 0 602012..602743 - 243 209694142 - VSAL_I0549 - hypothetical protein 509 40.06 0 602822..603535 - 237 209694143 - VSAL_I0550 - endonuclease I precursor 510 41.77 0 603626..604111 - 161 209694144 - VSAL_I0551 - putative metallopeptidase, SprT family 511 42.60 +1 604227..605381 - 384 209694145 metK VSAL_I0552 - S-adenosylmethionine synthetase 512 33.33 -1 605512..605667 - 51 209694146 - VSAL_I0553 - hypothetical protein 513 46.05 +2 605768..607765 + 665 209694147 tktA VSAL_I0554 - transketolase 1 514 39.02 0 607905..608924 + 339 209694148 epd VSAL_I0555 - erythrose-4-phosphate dehydrogenase 515 42.87 +1 609091..610254 + 387 209694149 pgk VSAL_I0556 - phosphoglycerate kinase 516 43.73 +1 610409..611485 + 358 209694150 fbaA VSAL_I0557 - fructose-bisphosphate aldolase class II 517 42.29 0 611726..612976 - 416 209694151 srmB VSAL_I0558 - ATP-dependent RNA helicase SrmB 518 34.75 -1 613065..613769 - 234 209694152 - VSAL_I0559 - hypothetical protein 519 40.33 0 614058..615371 + 437 209694153 - VSAL_I0560 - branched chain amino acid transport system II carrier protein 520 40.08 0 615500..616018 - 172 209694154 fldB VSAL_I0561 - flavodoxin 2 521 39.42 0 616155..617057 + 300 209694155 xerD VSAL_I0562 - tyrosine recombinase XerD 522 39.51 0 617137..617913 + 258 209694156 dsbC VSAL_I0563 - thiol/disulfide interchange protein DsbC precursor 523 41.15 0 617993..619732 + 579 209694157 recJ VSAL_I0564 - single-stranded-DNA-specific exonuclease RecJ 524 41.97 0 621111..622616 + 501 209694158 lysU VSAL_I0566 - lysyl-tRNA synthetase, heat inducible 525 39.31 0 623013..624350 + 445 209694159 - VSAL_I0567 - sigma-54 interacting regulatory protein 526 41.26 0 624417..625085 - 222 209694160 mutH VSAL_I0568 - DNA mismatch repair protein MutH 527 41.33 0 625679..626191 + 170 209694161 nudH VSAL_I0569 - (di)nucleoside polyphosphate hydrolase 528 39.61 0 626228..628489 + 753 209694162 ptsP VSAL_I0570 - phosphoenolpyruvate-protein phosphotransferase PtsP 529 40.05 0 628490..629293 + 267 209694163 - VSAL_I0571 - integral membrane protein 530 40.14 0 629304..630155 + 283 209694164 lgt VSAL_I0572 - prolipoprotein diacylglyceryl transferase 531 39.51 0 630234..631091 + 285 209694165 thyA VSAL_I0573 - thymidylate synthase 532 41.01 0 631160..632305 - 381 209694166 nptA VSAL_I0574 - sodium-dependent phosphate pump 533 37.26 0 632642..633583 + 313 209694167 nhaR VSAL_I0575 - transcriptional activator protein NhaR (sodium/proton antiporter regulator protein) 534 33.97 -1 633619..633930 + 103 209694168 hlyU VSAL_I0576 - transcriptional activator HlyU 535 44.83 +1 634052..634312 - 86 209694169 rpsT VSAL_I0577 - 30S ribosomal protein S20 536 39.29 0 634534..636093 + 519 209694170 mviN VSAL_I0578 - virulence factor MviN homolog 537 39.23 0 636184..637116 + 310 209694171 ribF VSAL_I0579 - riboflavin biosynthesis protein RibF 538 42.08 0 637153..640011 + 952 209694172 ileS VSAL_I0580 - isoleucyl-tRNA synthetase 539 40.50 0 640011..640526 + 171 209694173 lspA VSAL_I0581 - lipoprotein signal peptidase 540 37.96 0 640621..641052 + 143 209694174 fkpB VSAL_I0582 - FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase 541 40.53 0 641077..642021 + 314 209694175 ispH VSAL_I0583 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 542 42.10 0 642091..642900 + 269 209694176 dapB VSAL_I0584 - dihydrodipicolinate reductase 543 44.42 +1 643459..644613 + 384 209694177 carA VSAL_I0585 - carbamoyl-phosphate synthase small chain 544 43.86 +1 644631..647861 + 1076 209694178 carB VSAL_I0586 - carbamoyl-phosphate synthase large chain 545 39.01 0 647963..649372 - 469 209694179 dacB VSAL_I0587 - penicillin-binding protein 4 precursor 546 42.12 0 649514..650515 - 333 209694180 ompU VSAL_I0588 - major outer membrane protein OmpU 547 39.24 0 651098..651571 + 157 209694181 greA VSAL_I0589 - transcription elongation factor GreA 548 35.69 -1 651666..651962 - 98 209694182 - VSAL_I0590 - putative RNA-binding protein 549 41.11 0 652081..652710 + 209 209694183 rrmJ VSAL_I0591 - ribosomal RNA large subunit methyltransferase J (cell division protein FtsJ) 550 41.70 0 652796..654778 + 660 209694184 hflB VSAL_I0592 - cell division protein FtsH 551 40.17 0 654843..655676 + 277 209694185 folP VSAL_I0593 - dihydropteroate synthase 552 40.73 0 655733..657070 + 445 209694186 glmM VSAL_I0594 - phosphoglucosamine mutase 553 40.54 0 657222..657554 + 110 209694187 secG VSAL_I0595 - protein-export membrane protein SecG (preprotein translocase band subunit) 554 39.25 0 657962..658417 + 151 209694188 - VSAL_I0596 - hypothetical protein 555 41.13 0 658434..659921 + 495 209694189 nusA VSAL_I0597 - transcription elongation protein NusA 556 42.71 +1 659945..662620 + 891 209694190 - VSAL_I0598 - translation initiation factor IF-2 557 41.67 0 662734..663141 + 135 209694191 rbfA VSAL_I0599 - ribosome-binding factor A 558 41.07 0 663141..664097 + 318 209694192 truB VSAL_I0600 - tRNA pseudouridine synthase B 559 42.22 0 664260..664529 + 89 209694193 rpsO VSAL_I0601 - 30S ribosomal protein S15 560 44.23 +1 664832..666988 + 718 209694194 pnp VSAL_I0602 - polyribonucleotide nucleotidyltransferase 561 36.79 0 667099..668082 + 327 209694195 nlpI VSAL_I0603 - lipoprotein NlpI precursor 562 37.09 0 668165..669043 - 292 209694196 - VSAL_I0604 - putative peptidase 563 41.42 0 669053..670054 - 333 209694197 - VSAL_I0605 - putative peptidase 564 37.50 0 670270..672309 - 679 209694198 - VSAL_I0606 - putative signaling protein 565 36.22 -1 672524..673042 + 172 209694199 - VSAL_I0607 - hypothetical protein 566 39.29 0 673032..673535 + 167 209694200 - VSAL_I0608 - putative acetyltransferase 567 32.08 -2 673678..673836 + 52 209694201 - VSAL_I0609 - hypothetical protein 568 33.73 -1 673857..674105 - 82 209694202 - VSAL_I0610 - hypothetical protein 569 38.06 0 674232..674633 + 133 209694203 - VSAL_I0611 - DNA polymerase III, psi subunit 570 38.26 0 674623..675069 + 148 209694204 rimI VSAL_I0612 - ribosomal-protein-alanine acetyltransferase 571 42.88 +1 675187..676767 + 526 209694205 prfC VSAL_I0613 - peptide chain release factor 3 (RF-3) 572 36.05 -1 676846..676992 + 48 209694206 - VSAL_I0614 - hypothetical protein 573 36.55 0 676973..677749 + 258 209694207 - VSAL_I0615 - putative DNase 574 43.61 +1 677973..679256 + 427 209694208 - VSAL_I0616 - putative sodium-dependent nucleoside transporter protein 575 39.30 0 679393..680700 + 435 209694209 - VSAL_I0617 - transposase 576 40.00 0 681014..681223 + 69 209694210 - VSAL_I0618 - hypothetical protein 577 42.86 +1 681508..682284 + 258 209694211 deoC VSAL_I0619 - deoxyribose-phosphate aldolase 578 42.19 0 682400..683731 + 443 209694212 deoA VSAL_I0620 - thymidine phosphorylase 579 42.51 0 683742..684962 + 406 209694213 deoB VSAL_I0621 - phosphopentomutase 580 37.33 0 685836..686435 - 199 209694214 smp VSAL_I0623 - peripheral membrane protein 581 40.45 0 686566..687534 + 322 209694215 serB VSAL_I0624 - phosphoserine phosphatase 582 37.81 0 687588..689933 - 781 209694216 - VSAL_I0625 - hypothetical protein 583 43.12 +1 690051..691430 + 459 209694217 radA VSAL_I0626 - DNA repair protein RadA (dna repair protein sms) 584 43.31 +1 691624..693708 + 694 209694218 fusA VSAL_I0627 - elongation factor G (EF-G) 585 35.90 -1 693819..694052 - 77 209694219 - VSAL_I0628 - hypothetical protein 586 39.20 0 694165..695442 - 425 209694220 codA VSAL_I0629 - cytosine deaminase 587 42.26 0 695453..696706 - 417 209694221 codB VSAL_I0630 - cytosine permease 588 38.64 0 697136..698812 - 558 209694222 - VSAL_I0631 - putative AMP-binding acetyl-CoA synthetase 589 41.71 0 699029..701596 - 855 209694223 mutS VSAL_I0632 - DNA mismatch repair protein MutS 590 42.77 +1 701705..702202 + 165 209694224 - VSAL_I0633 - putative competence-damaged protein 591 39.66 0 702343..703386 + 347 209694225 recA VSAL_I0634 - protein RecA (recombinase A) 592 42.28 0 703629..706211 + 860 209694226 alaS VSAL_I0635 - alanyl-tRNA synthetase 593 37.26 0 706221..707390 + 389 209694227 lysC VSAL_I0636 - aspartokinase 2 594 43.28 +1 707472..707672 + 66 209694228 csrA VSAL_I0637 - carbon storage regulator 595 40.87 0 709310..709561 + 83 209694229 - VSAL_I0638 - oxaloacetate decarboxylase 1, subunit gamma 596 41.50 0 709599..711386 + 595 209694230 - VSAL_I0639 - oxaloacetate decarboxylase 2, subunit alpha 597 41.11 0 711398..712528 + 376 209694231 - VSAL_I0640 - oxaloacetate decarboxylase, beta subunit 598 38.66 0 712625..713056 + 143 209694232 - VSAL_I0641 - inner membrane protein 599 39.08 0 713065..715917 + 950 209694233 - VSAL_I0642 - exported pepdidase, putative zinc protease 600 38.31 0 716044..717609 + 521 209694234 gshA VSAL_I0643 - glutamate--cysteine ligase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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