version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3 40.59 0 2277..3902 - 541 209693637 oxaA VSAL_I0003 - inner membrane protein 4 41.81 0 4129..4482 - 117 209693638 rnpA VSAL_I0004 - ribonuclease P protein component (RNase P protein) 5 45.19 +1 4499..4633 - 44 209693639 rpmH VSAL_I0005 - 50S ribosomal protein L34 6 40.79 0 4820..5557 - 245 209693640 - VSAL_I0006 - putative amino-acid ABC transporter ATP-binding protein 7 39.43 0 5554..6225 - 223 209693641 - VSAL_I0007 - putative amino-acid ABC transporter, permease protein 8 39.31 0 6380..7132 - 250 209693642 - VSAL_I0008 - putative amino acid ABC transporter,substrate-binding protein 9 41.01 0 7427..8833 + 468 209693643 dnaA VSAL_I0009 - chromosomal replication initiator protein DnaA 10 40.36 0 8866..9975 + 369 209693644 dnaN VSAL_I0010 - DNA polymerase III subunit beta-subunit 11 41.11 0 9989..11068 + 359 209693645 recF VSAL_I0011 - DNA replication and repair protein RecF 12 42.43 0 11086..13503 + 805 209693646 gyrB VSAL_I0012 - DNA gyrase subunit B 13 40.39 0 14049..15239 - 396 209693647 - VSAL_I0014 - transposase 14 36.21 -1 16295..16642 - 115 209693648 - VSAL_I0015 - transposase 15 37.78 0 16639..16953 - 104 209693649 - VSAL_I0016 - transposase 16 44.44 +1 17172..18809 - 545 209693650 groL1 VSAL_I0017 - 60 kda chaperonin 1 17 42.01 0 18902..19189 - 95 209693651 groS1 VSAL_I0018 - 10 kDa chaperonin 1 18 40.62 0 19716..20909 - 397 209693652 - VSAL_I0019 - transposase 19 33.73 -1 21269..21523 + 84 209693653 - VSAL_I0020 - hypothetical protein 20 39.90 0 22530..23489 + 319 209693654 - VSAL_I0021 - antirestriction protein 21 40.70 0 23916..25109 - 397 209693655 - VSAL_I0022 - transposase 22 34.40 -1 25189..26034 + 281 209693656 - VSAL_I0023 - metallo-beta-lactamase superfamily protein 23 35.14 -1 26437..26988 + 183 209693657 cyaB VSAL_I0024 - adenylate cyclase 24 34.97 -1 27382..27747 + 121 209693658 - VSAL_I0025 - hypothetical protein 25 36.05 -1 27776..28180 + 134 209693659 - VSAL_I0026 - hypothetical protein 26 33.46 -1 28436..29215 + 259 209693660 - VSAL_I0027 - hypothetical protein 27 37.42 0 29602..30555 + 317 209693661 - VSAL_I0028 - hypothetical protein 28 40.81 0 30807..31769 - 320 209693662 - VSAL_I0029 - transposase 29 30.93 -2 32166..32456 + 96 209693663 - VSAL_I0030 - hypothetical protein 30 38.56 0 33193..35412 + 739 209693664 - VSAL_I0031 - putative cell wall degradation enzyme 31 30.77 -2 35412..35801 + 129 209693665 - VSAL_I0032 - hypothetical protein 32 32.22 -2 35944..36303 - 119 209693666 - VSAL_I0033 - hypothetical protein 33 31.65 -2 36382..37035 - 217 209693667 - VSAL_I0034 - hypothetical protein 34 40.55 0 37276..38466 - 396 209693668 - VSAL_I0035 - transposase 35 35.94 -1 40119..41000 + 293 209693669 - VSAL_I0038 - transposase 36 40.69 0 41289..42239 + 316 209693670 - VSAL_I0039 - transposase 37 40.54 0 42740..43933 + 397 209693671 - VSAL_I0040 - transposase 38 43.75 +1 44867..46393 + 508 209693672 - VSAL_I0042 - putative competence protein 39 37.82 0 46481..47350 + 289 209693673 - VSAL_I0043 - putative acyltransferase 40 37.18 0 47417..48040 - 207 209693674 dsbA VSAL_I0044 - thiol/disulfide interchange protein DsbA precursor 41 41.87 0 48066..49049 - 327 209693675 rdoA VSAL_I0045 - putative phosphotransferase 42 39.25 0 49108..50526 - 472 209693676 - VSAL_I0046 - putative ferredoxin 43 36.74 0 50752..51015 - 87 209693677 - VSAL_I0047 - hypothetical protein 44 38.04 0 51533..52318 + 261 209693678 - VSAL_I0048 - putative sporulation-control protein 45 36.11 -1 52420..53067 + 215 209693679 hlyIII VSAL_I0049 - hemolysin III 46 40.62 0 53364..54557 - 397 209693680 - VSAL_I0050 - transposase 47 42.38 0 54711..54920 - 69 209693681 cspV VSAL_I0051 - cold shock protein 48 42.27 0 55198..56730 - 510 209693682 ilvA VSAL_I0052 - threonine dehydratase 49 44.87 +1 56735..58207 - 490 209693683 ilvD VSAL_I0053 - dihydroxy-acid dehydratase 50 40.56 0 58234..58482 - 82 209693684 ilvM VSAL_I0054 - putative acetolactate synthase small regulatory subunit 51 40.54 0 59847..61040 + 397 209693685 - VSAL_I0056 - transposase 52 32.77 -2 61632..62159 + 175 209693686 - VSAL_I0057 - hypothetical protein 53 39.35 0 62442..63239 + 265 209693687 - VSAL_I0058 - putative ParA chromosome partitioning protein 54 39.49 0 63236..64210 + 324 209693688 - VSAL_I0059 - putative chromosome partitioning protein ParB 55 41.98 0 64200..64604 + 134 209693689 - VSAL_I0060 - hypothetical protein 56 38.98 0 64789..65160 + 123 209693690 - VSAL_I0061 - hypothetical protein 57 34.85 -1 65851..66444 - 197 209693691 - VSAL_I0062 - hypothetical protein 58 37.82 0 69062..69418 + 118 209693692 - VSAL_I0065 - transposase 59 37.37 0 69494..69790 + 98 209693693 - VSAL_I0066 - transposase 60 36.21 -1 72716..73063 - 115 209693694 - VSAL_I0069 - transposase 61 37.78 0 73060..73374 - 104 209693695 - VSAL_I0070 - transposase 62 44.01 +1 74902..76278 - 458 209693696 trkA VSAL_I0072 - Trk system potassium uptake protein TrkA 63 43.00 +1 76303..77637 - 444 209693697 rsmB VSAL_I0073 - ribosomal RNA small subunit methyltransferase B 64 42.96 +1 77686..78651 - 321 209693698 fmt VSAL_I0074 - methionyl-tRNA formyltransferase 65 40.20 0 78654..79163 - 169 209693699 def VSAL_I0075 - peptide deformylase (polypeptide deformylase) 66 37.85 0 79281..80342 + 353 209693700 - VSAL_I0076 - putative cell wall degradation enzyme 67 43.24 +1 80351..81460 + 369 209693701 smf VSAL_I0077 - Smf protein 68 37.34 0 81463..81936 + 157 209693702 - VSAL_I0078 - hypothetical protein 69 38.60 0 81946..82515 + 189 209693703 yrdD VSAL_I0079 - DNA topoisomerase 70 38.78 0 82555..83673 - 372 209693704 purK VSAL_I0080 - phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 71 43.20 +1 83673..84209 - 178 209693705 purE VSAL_I0081 - phosphoribosylaminoimidazole carboxylase catalytic subunit 72 41.40 0 84360..84917 + 185 209693706 - VSAL_I0082 - hypothetical protein 73 38.81 0 84984..85805 + 273 209693707 aroE VSAL_I0083 - shikimate dehydrogenase 74 35.48 -1 85879..86064 + 61 209693708 - VSAL_I0084 - hypothetical protein 75 34.62 -1 86057..86602 - 181 209693709 - VSAL_I0085 - putative transferase 76 33.56 -1 114812..115696 - 294 209693710 ilvY VSAL_I0086 - HTH-type transcriptional regulator, LysR-family 77 39.06 0 115825..117309 + 494 209693711 ilvC VSAL_I0087 - ketol-acid reductoisomerase 78 33.33 -1 117397..117648 - 83 209693712 - VSAL_I0088 - hypothetical protein 79 40.89 0 117758..120826 - 1022 209693713 - VSAL_I0089 - putative integral membrane component of multidrug efflux system 80 39.30 0 120838..121944 - 368 209693714 - VSAL_I0090 - putative multidrug transporter, HlyD family 81 37.00 0 121963..122562 - 199 209693715 - VSAL_I0091 - HTH-type transcriptional regulator, TetR family 82 39.58 0 122717..124732 + 671 209693716 rep VSAL_I0092 - ATP-dependent DNA helicase rep 83 43.63 +1 124833..125240 - 135 209693717 - VSAL_I0093 - cytochrome c 84 41.76 0 128498..130051 + 517 209693718 - VSAL_I0095 - transport protein, extracellular solute-binding protein 85 40.29 0 130188..131165 + 325 209693719 - VSAL_I0096 - binding-protein-dependent transport system,inner membrane component 86 42.46 0 131168..132109 + 313 209693720 - VSAL_I0097 - binding-protein-dependent transport system,inner membrane component 87 43.26 +1 132347..133927 + 526 209693721 - VSAL_I0098 - transporter, BCCT family 88 40.03 0 134012..134728 - 238 209693722 - VSAL_I0099 - putative exonuclease 89 40.99 0 134738..136618 - 626 209693723 - VSAL_I0100 - putative cyclic nucleotide binding protein 90 41.18 0 136794..137672 + 292 209693724 - VSAL_I0101 - hypothetical protein 91 39.39 0 137656..137919 + 87 209693725 - VSAL_I0102 - hypothetical protein 92 38.81 0 137970..139940 - 656 209693726 - VSAL_I0103 - HTH-type transcriptional regulator 93 42.38 0 140087..140827 - 246 209693727 - VSAL_I0104 - hypothetical protein 94 42.60 +1 140840..141886 - 348 209693728 - VSAL_I0105 - hypothetical protein 95 40.72 0 141927..143063 - 378 209693729 - VSAL_I0106 - hypothetical protein 96 45.62 +1 143122..143772 - 216 209693730 - VSAL_I0107 - membrane protein 97 47.18 +2 143787..144566 - 259 209693731 - VSAL_I0108 - membrane protein 98 28.62 -2 144627..144923 - 98 209693732 - VSAL_I0109 - hypothetical protein 99 45.18 +1 144926..145288 - 120 209693733 - VSAL_I0110 - hypothetical protein 100 31.03 -2 145290..145637 - 115 209693734 - VSAL_I0111 - hypothetical protein 101 36.05 -1 145902..146783 + 293 209693735 - VSAL_I0112 - transposase 102 37.78 0 146904..147218 + 104 209693736 - VSAL_I0113 - transposase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.