IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
439	 39.07	0	533617..534087	+	156	209694073	mshA	VSAL_I0477	-	type IV pilus, mannose-sensitive hemagglutinin A
440	 37.07	0	534214..534828	+	204	209694074	mshC	VSAL_I0478	-	type IV pilus, prepilin-like protein (MSHC)
441	 38.05	0	534825..535418	+	197	209694075	mshD	VSAL_I0479	-	type IV pilus, prepilin-like protein (MSHD)
442	 40.61	0	535418..536173	+	251	209694076	mshO	VSAL_I0480	-	exported protein MshO
443	 40.00	0	536163..536597	+	144	209694077	mshP	VSAL_I0481	-	exported protein MshP
444	 45.88	+2	541014..542057	+	347	209694078	mreB	VSAL_I0483	-	rod shape-determining protein MreB
445	 37.53	0	542080..542937	+	285	209694079	mreC	VSAL_I0484	-	rod shape-determining protein MreC
446	 40.24	0	542927..543418	+	163	209694080	mreD	VSAL_I0485	-	rod shape-determining protein MreD
447	 39.76	0	543428..544003	+	191	209694081	-	VSAL_I0486	-	Maf-like protein
448	 39.73	0	544023..545492	+	489	209694082	cafA	VSAL_I0487	-	ribonuclease G
449	 38.74	0	545504..549367	+	1287	209694083	-	VSAL_I0488	-	hypothetical protein
450	 43.40	+1	549469..550233	+	254	209694084	-	VSAL_I0489	-	putative carbon-nitrogen hydrolase
451	 42.32	0	550344..551789	+	481	209694085	tldD	VSAL_I0490	-	protein TldD
452	 39.07	0	551887..552426	-	179	209694086	-	VSAL_I0491	-	hypothetical protein
453	 42.49	0	552536..553879	+	447	209694087	pmbA	VSAL_I0492	-	protein PmbA (protein TldE)
454	 44.84	+1	553963..555318	-	451	209694088	-	VSAL_I0493	-	magnesium transporter
455	 44.44	+1	555630..555908	-	92	209694089	ptsO	VSAL_I0494	-	phosphocarrier protein NPr
456	 39.18	0	555911..556765	-	284	209694090	-	VSAL_I0495	-	ATP/GTP-binding protein
457	 40.49	0	556789..557235	-	148	209694091	ptsN	VSAL_I0496	-	nitrogen regulatory IIA protein, PTS system
458	 35.76	-1	557237..557524	-	95	209694092	-	VSAL_I0497	-	sigma-54 modulation protein
459	 41.63	0	557544..559013	-	489	209694093	rpoN	VSAL_I0498	-	RNA polymerase sigma-54 factor (sigma-N)
460	 40.63	0	559040..559765	-	241	209694094	-	VSAL_I0499	-	ABC transport protein, ATP-binding component
461	 37.13	0	559768..560268	-	166	209694095	-	VSAL_I0500	-	hypothetical protein
462	 36.70	0	560249..560812	-	187	209694096	-	VSAL_I0501	-	hypothetical protein
463	 40.50	0	560809..561366	-	185	209694097	kdsC	VSAL_I0502	-	3-deoxy-d-manno-octulosonate 8-phosphate phosphatase
464	 41.54	0	561366..562340	-	324	209694098	kdsD	VSAL_I0503	-	arabinose 5-phosphate isomerase
465	 40.76	0	562544..563512	-	322	209694099	-	VSAL_I0504	-	sodium/calcium exchanger protein
466	 41.39	0	563711..564517	+	268	209694100	-	VSAL_I0505	-	toluene tolerance protein Ttg2A
467	 43.40	+1	564510..565304	+	264	209694101	-	VSAL_I0506	-	toluene tolerance protein Ttg2B
468	 40.20	0	565307..565801	+	164	209694102	-	VSAL_I0507	-	toluene tolerance protein Ttg2C
469	 37.85	0	565801..566442	+	213	209694103	-	VSAL_I0508	-	toluene tolerance protein Ttg2
470	 35.83	-1	566442..566762	+	106	209694104	-	VSAL_I0509	-	conserved hypothetical protein containing
471	 37.21	0	566762..567019	+	85	209694105	-	VSAL_I0510	-	hypothetical protein
472	 43.03	+1	567032..568300	+	422	209694106	murA	VSAL_I0511	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
473	 40.50	0	568435..569160	+	241	209694107	plsC	VSAL_I0512	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
474	 36.21	-1	571115..571462	-	115	209694108	-	VSAL_I0515	-	transposase
475	 38.15	0	571459..571728	-	89	209694109	-	VSAL_I0516	-	transposase
476	 41.03	0	572099..572488	-	129	209694110	-	VSAL_I0517	-	Endoribonuclease L-PSP
477	 38.28	0	572628..573092	-	154	209694111	pyrI	VSAL_I0518	-	aspartate carbamoyltransferase regulatory chain
478	 40.00	0	573106..574035	-	309	209694112	pyrB	VSAL_I0519	-	aspartate carbamoyltransferase catalytic subunit
479	 40.50	0	574311..575315	-	334	209694113	argI	VSAL_I0520	-	ornithine carbamoyltransferase chain I
480	 40.62	0	575411..576631	-	406	209694114	arcA	VSAL_I0521	-	arginine deiminase
481	 39.09	0	576784..577200	+	138	209694115	-	VSAL_I0522	-	hypothetical protein
482	 38.59	0	577288..578124	+	278	209694116	-	VSAL_I0523	-	hypothetical protein
483	 43.71	+1	578281..581142	-	953	209694117	valS	VSAL_I0524	-	valyl-tRNA synthetase
484	 41.67	0	581253..581696	-	147	209694118	holC	VSAL_I0525	-	DNA polymerase III, chi subunit
485	 43.61	+1	581790..583298	-	502	209694119	pepA	VSAL_I0526	-	cytosol aminopeptidase
486	 39.71	0	583488..584600	+	370	209694120	-	VSAL_I0527	-	putative permease
487	 39.28	0	584593..585669	+	358	209694121	-	VSAL_I0528	-	putative permease
488	 39.41	0	585746..586222	-	158	209694122	-	VSAL_I0529	-	membrane protein
489	 34.11	-1	586622..586879	-	85	209694123	-	VSAL_I0530	-	hypothetical protein
490	 41.86	0	586955..587341	-	128	209694124	dgkA	VSAL_I0531	-	diacylglycerol kinase
491	 39.84	0	588313..589449	-	378	209694125	mltC	VSAL_I0532	-	membrane-bound lytic murein transglycosylase C precursor
492	 39.93	0	589560..589832	-	90	209694126	yggX	VSAL_I0533	-	probable Fe(2+) trafficking protein
493	 42.17	0	589835..590887	-	350	209694127	mutY	VSAL_I0534	-	A/G-specific adenine glycosylase
494	 45.89	+2	591105..591821	+	238	209694128	trmB	VSAL_I0535	-	tRNA (guanine-n(7)-)-methyltransferase
495	 41.69	0	591928..592848	+	306	209694129	glsA	VSAL_I0536	-	thermolabile glutaminase
496	 41.43	0	592953..594113	-	386	209694130	yggW	VSAL_I0537	-	oxygen-independent coproporphyrinogen III oxidase-like protein
497	 44.05	+1	594117..594713	-	198	209694131	-	VSAL_I0538	-	putative hydrolase
498	 35.88	-1	594724..595155	-	143	209694132	-	VSAL_I0539	-	hypothetical protein
499	 39.29	0	595227..595478	-	83	209694133	-	VSAL_I0540	-	hypothetical protein
500	 38.92	0	595507..596061	-	184	209694134	-	VSAL_I0541	-	membrane protein, related to K+ transport
501	 43.83	+1	596137..596955	-	272	209694135	proC	VSAL_I0542	-	pyrroline-5-carboxylate reductase
502	 38.80	0	596942..597709	-	255	209694136	-	VSAL_I0543	-	membrane protein, related to K+ transport
503	 40.85	0	597733..598770	+	345	209694137	pilT	VSAL_I0544	-	twitching mobility protein PilT, type II/IV secretion system protein
504	 41.10	0	598773..599879	+	368	209694138	pilU	VSAL_I0545	-	twitching motility protein PilU, type II/IV secretion system protein
505	 41.78	0	599983..600408	-	141	209694139	yqgF	VSAL_I0546	-	hypothetical protein
506	 40.43	0	600405..600968	-	187	209694140	-	VSAL_I0547	-	hypothetical protein
507	 41.34	0	601042..602028	-	328	209694141	gshB	VSAL_I0548	-	glutathione synthetase
508	 39.21	0	602012..602743	-	243	209694142	-	VSAL_I0549	-	hypothetical protein
509	 40.06	0	602822..603535	-	237	209694143	-	VSAL_I0550	-	endonuclease I precursor
510	 41.77	0	603626..604111	-	161	209694144	-	VSAL_I0551	-	putative metallopeptidase, SprT family
511	 42.60	+1	604227..605381	-	384	209694145	metK	VSAL_I0552	-	S-adenosylmethionine synthetase
512	 33.33	-1	605512..605667	-	51	209694146	-	VSAL_I0553	-	hypothetical protein
513	 46.05	+2	605768..607765	+	665	209694147	tktA	VSAL_I0554	-	transketolase 1
514	 39.02	0	607905..608924	+	339	209694148	epd	VSAL_I0555	-	erythrose-4-phosphate dehydrogenase
515	 42.87	+1	609091..610254	+	387	209694149	pgk	VSAL_I0556	-	phosphoglycerate kinase
516	 43.73	+1	610409..611485	+	358	209694150	fbaA	VSAL_I0557	-	fructose-bisphosphate aldolase class II
517	 42.29	0	611726..612976	-	416	209694151	srmB	VSAL_I0558	-	ATP-dependent RNA helicase SrmB
518	 34.75	-1	613065..613769	-	234	209694152	-	VSAL_I0559	-	hypothetical protein
519	 40.33	0	614058..615371	+	437	209694153	-	VSAL_I0560	-	branched chain amino acid transport system II carrier protein
520	 40.08	0	615500..616018	-	172	209694154	fldB	VSAL_I0561	-	flavodoxin 2
521	 39.42	0	616155..617057	+	300	209694155	xerD	VSAL_I0562	-	tyrosine recombinase XerD
522	 39.51	0	617137..617913	+	258	209694156	dsbC	VSAL_I0563	-	thiol/disulfide interchange protein DsbC precursor
523	 41.15	0	617993..619732	+	579	209694157	recJ	VSAL_I0564	-	single-stranded-DNA-specific exonuclease RecJ
524	 41.97	0	621111..622616	+	501	209694158	lysU	VSAL_I0566	-	lysyl-tRNA synthetase, heat inducible
525	 39.31	0	623013..624350	+	445	209694159	-	VSAL_I0567	-	sigma-54 interacting regulatory protein
526	 41.26	0	624417..625085	-	222	209694160	mutH	VSAL_I0568	-	DNA mismatch repair protein MutH
527	 41.33	0	625679..626191	+	170	209694161	nudH	VSAL_I0569	-	(di)nucleoside polyphosphate hydrolase
528	 39.61	0	626228..628489	+	753	209694162	ptsP	VSAL_I0570	-	phosphoenolpyruvate-protein phosphotransferase PtsP
529	 40.05	0	628490..629293	+	267	209694163	-	VSAL_I0571	-	integral membrane protein
530	 40.14	0	629304..630155	+	283	209694164	lgt	VSAL_I0572	-	prolipoprotein diacylglyceryl transferase
531	 39.51	0	630234..631091	+	285	209694165	thyA	VSAL_I0573	-	thymidylate synthase
532	 41.01	0	631160..632305	-	381	209694166	nptA	VSAL_I0574	-	sodium-dependent phosphate pump
533	 37.26	0	632642..633583	+	313	209694167	nhaR	VSAL_I0575	-	transcriptional activator protein NhaR (sodium/proton antiporter regulator protein)
534	 33.97	-1	633619..633930	+	103	209694168	hlyU	VSAL_I0576	-	transcriptional activator HlyU
535	 44.83	+1	634052..634312	-	86	209694169	rpsT	VSAL_I0577	-	30S ribosomal protein S20
536	 39.29	0	634534..636093	+	519	209694170	mviN	VSAL_I0578	-	virulence factor MviN homolog
537	 39.23	0	636184..637116	+	310	209694171	ribF	VSAL_I0579	-	riboflavin biosynthesis protein RibF
538	 42.08	0	637153..640011	+	952	209694172	ileS	VSAL_I0580	-	isoleucyl-tRNA synthetase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.