version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 437 41.23 0 532170..532739 + 189 209694071 mshB VSAL_I0475 - type IV pilus, prepilin-like protein (MSHB) 438 40.30 0 532892..533365 + 157 209694072 mshA VSAL_I0476 - type IV pilus, mannose-sensitive hemagglutinin A 439 39.07 0 533617..534087 + 156 209694073 mshA VSAL_I0477 - type IV pilus, mannose-sensitive hemagglutinin A 440 37.07 0 534214..534828 + 204 209694074 mshC VSAL_I0478 - type IV pilus, prepilin-like protein (MSHC) 441 38.05 0 534825..535418 + 197 209694075 mshD VSAL_I0479 - type IV pilus, prepilin-like protein (MSHD) 442 40.61 0 535418..536173 + 251 209694076 mshO VSAL_I0480 - exported protein MshO 443 40.00 0 536163..536597 + 144 209694077 mshP VSAL_I0481 - exported protein MshP 444 45.88 +2 541014..542057 + 347 209694078 mreB VSAL_I0483 - rod shape-determining protein MreB 445 37.53 0 542080..542937 + 285 209694079 mreC VSAL_I0484 - rod shape-determining protein MreC 446 40.24 0 542927..543418 + 163 209694080 mreD VSAL_I0485 - rod shape-determining protein MreD 447 39.76 0 543428..544003 + 191 209694081 - VSAL_I0486 - Maf-like protein 448 39.73 0 544023..545492 + 489 209694082 cafA VSAL_I0487 - ribonuclease G 449 38.74 0 545504..549367 + 1287 209694083 - VSAL_I0488 - hypothetical protein 450 43.40 +1 549469..550233 + 254 209694084 - VSAL_I0489 - putative carbon-nitrogen hydrolase 451 42.32 0 550344..551789 + 481 209694085 tldD VSAL_I0490 - protein TldD 452 39.07 0 551887..552426 - 179 209694086 - VSAL_I0491 - hypothetical protein 453 42.49 0 552536..553879 + 447 209694087 pmbA VSAL_I0492 - protein PmbA (protein TldE) 454 44.84 +1 553963..555318 - 451 209694088 - VSAL_I0493 - magnesium transporter 455 44.44 +1 555630..555908 - 92 209694089 ptsO VSAL_I0494 - phosphocarrier protein NPr 456 39.18 0 555911..556765 - 284 209694090 - VSAL_I0495 - ATP/GTP-binding protein 457 40.49 0 556789..557235 - 148 209694091 ptsN VSAL_I0496 - nitrogen regulatory IIA protein, PTS system 458 35.76 -1 557237..557524 - 95 209694092 - VSAL_I0497 - sigma-54 modulation protein 459 41.63 0 557544..559013 - 489 209694093 rpoN VSAL_I0498 - RNA polymerase sigma-54 factor (sigma-N) 460 40.63 0 559040..559765 - 241 209694094 - VSAL_I0499 - ABC transport protein, ATP-binding component 461 37.13 0 559768..560268 - 166 209694095 - VSAL_I0500 - hypothetical protein 462 36.70 0 560249..560812 - 187 209694096 - VSAL_I0501 - hypothetical protein 463 40.50 0 560809..561366 - 185 209694097 kdsC VSAL_I0502 - 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase 464 41.54 0 561366..562340 - 324 209694098 kdsD VSAL_I0503 - arabinose 5-phosphate isomerase 465 40.76 0 562544..563512 - 322 209694099 - VSAL_I0504 - sodium/calcium exchanger protein 466 41.39 0 563711..564517 + 268 209694100 - VSAL_I0505 - toluene tolerance protein Ttg2A 467 43.40 +1 564510..565304 + 264 209694101 - VSAL_I0506 - toluene tolerance protein Ttg2B 468 40.20 0 565307..565801 + 164 209694102 - VSAL_I0507 - toluene tolerance protein Ttg2C 469 37.85 0 565801..566442 + 213 209694103 - VSAL_I0508 - toluene tolerance protein Ttg2 470 35.83 -1 566442..566762 + 106 209694104 - VSAL_I0509 - conserved hypothetical protein containing 471 37.21 0 566762..567019 + 85 209694105 - VSAL_I0510 - hypothetical protein 472 43.03 +1 567032..568300 + 422 209694106 murA VSAL_I0511 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 473 40.50 0 568435..569160 + 241 209694107 plsC VSAL_I0512 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 474 36.21 -1 571115..571462 - 115 209694108 - VSAL_I0515 - transposase 475 38.15 0 571459..571728 - 89 209694109 - VSAL_I0516 - transposase 476 41.03 0 572099..572488 - 129 209694110 - VSAL_I0517 - Endoribonuclease L-PSP 477 38.28 0 572628..573092 - 154 209694111 pyrI VSAL_I0518 - aspartate carbamoyltransferase regulatory chain 478 40.00 0 573106..574035 - 309 209694112 pyrB VSAL_I0519 - aspartate carbamoyltransferase catalytic subunit 479 40.50 0 574311..575315 - 334 209694113 argI VSAL_I0520 - ornithine carbamoyltransferase chain I 480 40.62 0 575411..576631 - 406 209694114 arcA VSAL_I0521 - arginine deiminase 481 39.09 0 576784..577200 + 138 209694115 - VSAL_I0522 - hypothetical protein 482 38.59 0 577288..578124 + 278 209694116 - VSAL_I0523 - hypothetical protein 483 43.71 +1 578281..581142 - 953 209694117 valS VSAL_I0524 - valyl-tRNA synthetase 484 41.67 0 581253..581696 - 147 209694118 holC VSAL_I0525 - DNA polymerase III, chi subunit 485 43.61 +1 581790..583298 - 502 209694119 pepA VSAL_I0526 - cytosol aminopeptidase 486 39.71 0 583488..584600 + 370 209694120 - VSAL_I0527 - putative permease 487 39.28 0 584593..585669 + 358 209694121 - VSAL_I0528 - putative permease 488 39.41 0 585746..586222 - 158 209694122 - VSAL_I0529 - membrane protein 489 34.11 -1 586622..586879 - 85 209694123 - VSAL_I0530 - hypothetical protein 490 41.86 0 586955..587341 - 128 209694124 dgkA VSAL_I0531 - diacylglycerol kinase 491 39.84 0 588313..589449 - 378 209694125 mltC VSAL_I0532 - membrane-bound lytic murein transglycosylase C precursor 492 39.93 0 589560..589832 - 90 209694126 yggX VSAL_I0533 - probable Fe(2+) trafficking protein 493 42.17 0 589835..590887 - 350 209694127 mutY VSAL_I0534 - A/G-specific adenine glycosylase 494 45.89 +2 591105..591821 + 238 209694128 trmB VSAL_I0535 - tRNA (guanine-n(7)-)-methyltransferase 495 41.69 0 591928..592848 + 306 209694129 glsA VSAL_I0536 - thermolabile glutaminase 496 41.43 0 592953..594113 - 386 209694130 yggW VSAL_I0537 - oxygen-independent coproporphyrinogen III oxidase-like protein 497 44.05 +1 594117..594713 - 198 209694131 - VSAL_I0538 - putative hydrolase 498 35.88 -1 594724..595155 - 143 209694132 - VSAL_I0539 - hypothetical protein 499 39.29 0 595227..595478 - 83 209694133 - VSAL_I0540 - hypothetical protein 500 38.92 0 595507..596061 - 184 209694134 - VSAL_I0541 - membrane protein, related to K+ transport 501 43.83 +1 596137..596955 - 272 209694135 proC VSAL_I0542 - pyrroline-5-carboxylate reductase 502 38.80 0 596942..597709 - 255 209694136 - VSAL_I0543 - membrane protein, related to K+ transport 503 40.85 0 597733..598770 + 345 209694137 pilT VSAL_I0544 - twitching mobility protein PilT, type II/IV secretion system protein 504 41.10 0 598773..599879 + 368 209694138 pilU VSAL_I0545 - twitching motility protein PilU, type II/IV secretion system protein 505 41.78 0 599983..600408 - 141 209694139 yqgF VSAL_I0546 - hypothetical protein 506 40.43 0 600405..600968 - 187 209694140 - VSAL_I0547 - hypothetical protein 507 41.34 0 601042..602028 - 328 209694141 gshB VSAL_I0548 - glutathione synthetase 508 39.21 0 602012..602743 - 243 209694142 - VSAL_I0549 - hypothetical protein 509 40.06 0 602822..603535 - 237 209694143 - VSAL_I0550 - endonuclease I precursor 510 41.77 0 603626..604111 - 161 209694144 - VSAL_I0551 - putative metallopeptidase, SprT family 511 42.60 +1 604227..605381 - 384 209694145 metK VSAL_I0552 - S-adenosylmethionine synthetase 512 33.33 -1 605512..605667 - 51 209694146 - VSAL_I0553 - hypothetical protein 513 46.05 +2 605768..607765 + 665 209694147 tktA VSAL_I0554 - transketolase 1 514 39.02 0 607905..608924 + 339 209694148 epd VSAL_I0555 - erythrose-4-phosphate dehydrogenase 515 42.87 +1 609091..610254 + 387 209694149 pgk VSAL_I0556 - phosphoglycerate kinase 516 43.73 +1 610409..611485 + 358 209694150 fbaA VSAL_I0557 - fructose-bisphosphate aldolase class II 517 42.29 0 611726..612976 - 416 209694151 srmB VSAL_I0558 - ATP-dependent RNA helicase SrmB 518 34.75 -1 613065..613769 - 234 209694152 - VSAL_I0559 - hypothetical protein 519 40.33 0 614058..615371 + 437 209694153 - VSAL_I0560 - branched chain amino acid transport system II carrier protein 520 40.08 0 615500..616018 - 172 209694154 fldB VSAL_I0561 - flavodoxin 2 521 39.42 0 616155..617057 + 300 209694155 xerD VSAL_I0562 - tyrosine recombinase XerD 522 39.51 0 617137..617913 + 258 209694156 dsbC VSAL_I0563 - thiol/disulfide interchange protein DsbC precursor 523 41.15 0 617993..619732 + 579 209694157 recJ VSAL_I0564 - single-stranded-DNA-specific exonuclease RecJ 524 41.97 0 621111..622616 + 501 209694158 lysU VSAL_I0566 - lysyl-tRNA synthetase, heat inducible 525 39.31 0 623013..624350 + 445 209694159 - VSAL_I0567 - sigma-54 interacting regulatory protein 526 41.26 0 624417..625085 - 222 209694160 mutH VSAL_I0568 - DNA mismatch repair protein MutH 527 41.33 0 625679..626191 + 170 209694161 nudH VSAL_I0569 - (di)nucleoside polyphosphate hydrolase 528 39.61 0 626228..628489 + 753 209694162 ptsP VSAL_I0570 - phosphoenolpyruvate-protein phosphotransferase PtsP 529 40.05 0 628490..629293 + 267 209694163 - VSAL_I0571 - integral membrane protein 530 40.14 0 629304..630155 + 283 209694164 lgt VSAL_I0572 - prolipoprotein diacylglyceryl transferase 531 39.51 0 630234..631091 + 285 209694165 thyA VSAL_I0573 - thymidylate synthase 532 41.01 0 631160..632305 - 381 209694166 nptA VSAL_I0574 - sodium-dependent phosphate pump 533 37.26 0 632642..633583 + 313 209694167 nhaR VSAL_I0575 - transcriptional activator protein NhaR (sodium/proton antiporter regulator protein) 534 33.97 -1 633619..633930 + 103 209694168 hlyU VSAL_I0576 - transcriptional activator HlyU 535 44.83 +1 634052..634312 - 86 209694169 rpsT VSAL_I0577 - 30S ribosomal protein S20 536 39.29 0 634534..636093 + 519 209694170 mviN VSAL_I0578 - virulence factor MviN homolog 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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