IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.70	0	312..746	-	144	209693635	mioC	VSAL_I0001	-	MioC protein
2	 42.76	+1	811..2178	-	455	209693636	trmE	VSAL_I0002	-	probable tRNA modification GTPase
3	 40.59	0	2277..3902	-	541	209693637	oxaA	VSAL_I0003	-	inner membrane protein
4	 41.81	0	4129..4482	-	117	209693638	rnpA	VSAL_I0004	-	ribonuclease P protein component (RNase P protein)
5	 45.19	+1	4499..4633	-	44	209693639	rpmH	VSAL_I0005	-	50S ribosomal protein L34
6	 40.79	0	4820..5557	-	245	209693640	-	VSAL_I0006	-	putative amino-acid ABC transporter ATP-binding protein
7	 39.43	0	5554..6225	-	223	209693641	-	VSAL_I0007	-	putative amino-acid ABC transporter, permease protein
8	 39.31	0	6380..7132	-	250	209693642	-	VSAL_I0008	-	putative amino acid ABC transporter,substrate-binding protein
9	 41.01	0	7427..8833	+	468	209693643	dnaA	VSAL_I0009	-	chromosomal replication initiator protein DnaA
10	 40.36	0	8866..9975	+	369	209693644	dnaN	VSAL_I0010	-	DNA polymerase III subunit beta-subunit
11	 41.11	0	9989..11068	+	359	209693645	recF	VSAL_I0011	-	DNA replication and repair protein RecF
12	 42.43	0	11086..13503	+	805	209693646	gyrB	VSAL_I0012	-	DNA gyrase subunit B
13	 40.39	0	14049..15239	-	396	209693647	-	VSAL_I0014	-	transposase
14	 36.21	-1	16295..16642	-	115	209693648	-	VSAL_I0015	-	transposase
15	 37.78	0	16639..16953	-	104	209693649	-	VSAL_I0016	-	transposase
16	 44.44	+1	17172..18809	-	545	209693650	groL1	VSAL_I0017	-	60 kda chaperonin 1
17	 42.01	0	18902..19189	-	95	209693651	groS1	VSAL_I0018	-	10 kDa chaperonin 1
18	 40.62	0	19716..20909	-	397	209693652	-	VSAL_I0019	-	transposase
19	 33.73	-1	21269..21523	+	84	209693653	-	VSAL_I0020	-	hypothetical protein
20	 39.90	0	22530..23489	+	319	209693654	-	VSAL_I0021	-	antirestriction protein
21	 40.70	0	23916..25109	-	397	209693655	-	VSAL_I0022	-	transposase
22	 34.40	-1	25189..26034	+	281	209693656	-	VSAL_I0023	-	metallo-beta-lactamase superfamily protein
23	 35.14	-1	26437..26988	+	183	209693657	cyaB	VSAL_I0024	-	adenylate cyclase
24	 34.97	-1	27382..27747	+	121	209693658	-	VSAL_I0025	-	hypothetical protein
25	 36.05	-1	27776..28180	+	134	209693659	-	VSAL_I0026	-	hypothetical protein
26	 33.46	-1	28436..29215	+	259	209693660	-	VSAL_I0027	-	hypothetical protein
27	 37.42	0	29602..30555	+	317	209693661	-	VSAL_I0028	-	hypothetical protein
28	 40.81	0	30807..31769	-	320	209693662	-	VSAL_I0029	-	transposase
29	 30.93	-2	32166..32456	+	96	209693663	-	VSAL_I0030	-	hypothetical protein
30	 38.56	0	33193..35412	+	739	209693664	-	VSAL_I0031	-	putative cell wall degradation enzyme
31	 30.77	-2	35412..35801	+	129	209693665	-	VSAL_I0032	-	hypothetical protein
32	 32.22	-2	35944..36303	-	119	209693666	-	VSAL_I0033	-	hypothetical protein
33	 31.65	-2	36382..37035	-	217	209693667	-	VSAL_I0034	-	hypothetical protein
34	 40.55	0	37276..38466	-	396	209693668	-	VSAL_I0035	-	transposase
35	 35.94	-1	40119..41000	+	293	209693669	-	VSAL_I0038	-	transposase
36	 40.69	0	41289..42239	+	316	209693670	-	VSAL_I0039	-	transposase
37	 40.54	0	42740..43933	+	397	209693671	-	VSAL_I0040	-	transposase
38	 43.75	+1	44867..46393	+	508	209693672	-	VSAL_I0042	-	putative competence protein
39	 37.82	0	46481..47350	+	289	209693673	-	VSAL_I0043	-	putative acyltransferase
40	 37.18	0	47417..48040	-	207	209693674	dsbA	VSAL_I0044	-	thiol/disulfide interchange protein DsbA precursor
41	 41.87	0	48066..49049	-	327	209693675	rdoA	VSAL_I0045	-	putative phosphotransferase
42	 39.25	0	49108..50526	-	472	209693676	-	VSAL_I0046	-	putative ferredoxin
43	 36.74	0	50752..51015	-	87	209693677	-	VSAL_I0047	-	hypothetical protein
44	 38.04	0	51533..52318	+	261	209693678	-	VSAL_I0048	-	putative sporulation-control protein
45	 36.11	-1	52420..53067	+	215	209693679	hlyIII	VSAL_I0049	-	hemolysin III
46	 40.62	0	53364..54557	-	397	209693680	-	VSAL_I0050	-	transposase
47	 42.38	0	54711..54920	-	69	209693681	cspV	VSAL_I0051	-	cold shock protein
48	 42.27	0	55198..56730	-	510	209693682	ilvA	VSAL_I0052	-	threonine dehydratase
49	 44.87	+1	56735..58207	-	490	209693683	ilvD	VSAL_I0053	-	dihydroxy-acid dehydratase
50	 40.56	0	58234..58482	-	82	209693684	ilvM	VSAL_I0054	-	putative acetolactate synthase small regulatory subunit
51	 40.54	0	59847..61040	+	397	209693685	-	VSAL_I0056	-	transposase
52	 32.77	-2	61632..62159	+	175	209693686	-	VSAL_I0057	-	hypothetical protein
53	 39.35	0	62442..63239	+	265	209693687	-	VSAL_I0058	-	putative ParA chromosome partitioning protein
54	 39.49	0	63236..64210	+	324	209693688	-	VSAL_I0059	-	putative chromosome partitioning protein ParB
55	 41.98	0	64200..64604	+	134	209693689	-	VSAL_I0060	-	hypothetical protein
56	 38.98	0	64789..65160	+	123	209693690	-	VSAL_I0061	-	hypothetical protein
57	 34.85	-1	65851..66444	-	197	209693691	-	VSAL_I0062	-	hypothetical protein
58	 37.82	0	69062..69418	+	118	209693692	-	VSAL_I0065	-	transposase
59	 37.37	0	69494..69790	+	98	209693693	-	VSAL_I0066	-	transposase
60	 36.21	-1	72716..73063	-	115	209693694	-	VSAL_I0069	-	transposase
61	 37.78	0	73060..73374	-	104	209693695	-	VSAL_I0070	-	transposase
62	 44.01	+1	74902..76278	-	458	209693696	trkA	VSAL_I0072	-	Trk system potassium uptake protein TrkA
63	 43.00	+1	76303..77637	-	444	209693697	rsmB	VSAL_I0073	-	ribosomal RNA small subunit methyltransferase B
64	 42.96	+1	77686..78651	-	321	209693698	fmt	VSAL_I0074	-	methionyl-tRNA formyltransferase
65	 40.20	0	78654..79163	-	169	209693699	def	VSAL_I0075	-	peptide deformylase (polypeptide deformylase)
66	 37.85	0	79281..80342	+	353	209693700	-	VSAL_I0076	-	putative cell wall degradation enzyme
67	 43.24	+1	80351..81460	+	369	209693701	smf	VSAL_I0077	-	Smf protein
68	 37.34	0	81463..81936	+	157	209693702	-	VSAL_I0078	-	hypothetical protein
69	 38.60	0	81946..82515	+	189	209693703	yrdD	VSAL_I0079	-	DNA topoisomerase
70	 38.78	0	82555..83673	-	372	209693704	purK	VSAL_I0080	-	phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
71	 43.20	+1	83673..84209	-	178	209693705	purE	VSAL_I0081	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
72	 41.40	0	84360..84917	+	185	209693706	-	VSAL_I0082	-	hypothetical protein
73	 38.81	0	84984..85805	+	273	209693707	aroE	VSAL_I0083	-	shikimate dehydrogenase
74	 35.48	-1	85879..86064	+	61	209693708	-	VSAL_I0084	-	hypothetical protein
75	 34.62	-1	86057..86602	-	181	209693709	-	VSAL_I0085	-	putative transferase
76	 33.56	-1	114812..115696	-	294	209693710	ilvY	VSAL_I0086	-	HTH-type transcriptional regulator, LysR-family
77	 39.06	0	115825..117309	+	494	209693711	ilvC	VSAL_I0087	-	ketol-acid reductoisomerase
78	 33.33	-1	117397..117648	-	83	209693712	-	VSAL_I0088	-	hypothetical protein
79	 40.89	0	117758..120826	-	1022	209693713	-	VSAL_I0089	-	putative integral membrane component of multidrug efflux system
80	 39.30	0	120838..121944	-	368	209693714	-	VSAL_I0090	-	putative multidrug transporter, HlyD family
81	 37.00	0	121963..122562	-	199	209693715	-	VSAL_I0091	-	HTH-type transcriptional regulator, TetR family
82	 39.58	0	122717..124732	+	671	209693716	rep	VSAL_I0092	-	ATP-dependent DNA helicase rep
83	 43.63	+1	124833..125240	-	135	209693717	-	VSAL_I0093	-	cytochrome c
84	 41.76	0	128498..130051	+	517	209693718	-	VSAL_I0095	-	transport protein, extracellular solute-binding protein
85	 40.29	0	130188..131165	+	325	209693719	-	VSAL_I0096	-	binding-protein-dependent transport system,inner membrane component
86	 42.46	0	131168..132109	+	313	209693720	-	VSAL_I0097	-	binding-protein-dependent transport system,inner membrane component
87	 43.26	+1	132347..133927	+	526	209693721	-	VSAL_I0098	-	transporter, BCCT family
88	 40.03	0	134012..134728	-	238	209693722	-	VSAL_I0099	-	putative exonuclease
89	 40.99	0	134738..136618	-	626	209693723	-	VSAL_I0100	-	putative cyclic nucleotide binding protein
90	 41.18	0	136794..137672	+	292	209693724	-	VSAL_I0101	-	hypothetical protein
91	 39.39	0	137656..137919	+	87	209693725	-	VSAL_I0102	-	hypothetical protein
92	 38.81	0	137970..139940	-	656	209693726	-	VSAL_I0103	-	HTH-type transcriptional regulator
93	 42.38	0	140087..140827	-	246	209693727	-	VSAL_I0104	-	hypothetical protein
94	 42.60	+1	140840..141886	-	348	209693728	-	VSAL_I0105	-	hypothetical protein
95	 40.72	0	141927..143063	-	378	209693729	-	VSAL_I0106	-	hypothetical protein
96	 45.62	+1	143122..143772	-	216	209693730	-	VSAL_I0107	-	membrane protein
97	 47.18	+2	143787..144566	-	259	209693731	-	VSAL_I0108	-	membrane protein
98	 28.62	-2	144627..144923	-	98	209693732	-	VSAL_I0109	-	hypothetical protein
99	 45.18	+1	144926..145288	-	120	209693733	-	VSAL_I0110	-	hypothetical protein
100	 31.03	-2	145290..145637	-	115	209693734	-	VSAL_I0111	-	hypothetical protein
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.