IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
409	 35.94	-1	495249..496130	-	293	209694043	-	VSAL_I0444	-	transposase
410	 38.92	0	497687..498796	+	369	209694044	-	VSAL_I0445	-	aminotransferase class-V
411	 35.95	-1	498845..500602	-	585	209694045	-	VSAL_I0446	-	O-antigen polymerase
412	 40.16	0	500682..503510	-	942	209694046	uvrA	VSAL_I0447	-	UvrABC system protein A
413	 38.62	0	503682..504551	-	289	209694047	galU	VSAL_I0448	-	UTP-glucose-1-phosphate uridylyltransferase
414	 33.09	-2	504688..505092	-	134	209694048	-	VSAL_I0449	-	hypothetical protein
415	 39.17	0	505085..506215	-	376	209694049	-	VSAL_I0450	-	putative glycosyl transferase
416	 37.89	0	506219..507424	-	401	209694050	-	VSAL_I0451	-	putative glycosyl transferase
417	 38.54	0	507421..508419	-	332	209694051	-	VSAL_I0452	-	putative glycosyl transferase
418	 36.23	-1	508412..509794	-	460	209694052	-	VSAL_I0453	-	membrane protein
419	 34.49	-1	509794..510999	-	401	209694053	-	VSAL_I0454	-	membrane protein
420	 34.04	-1	512441..513007	-	188	209694054	-	VSAL_I0456	-	transposase
421	 35.70	-1	513025..513447	-	140	209694055	-	VSAL_I0457	-	transposase
422	 40.21	0	514317..514898	-	193	209694056	-	VSAL_I0458	-	polysaccharide biosynthesis/export protein
423	 36.52	0	514899..516215	-	438	209694057	-	VSAL_I0459	-	hypothetical protein
424	 45.47	+1	517928..518479	+	183	209694058	ssb	VSAL_I0461	-	single-stranded DNA-binding protein
425	 35.24	-1	518552..519181	-	209	209694059	-	VSAL_I0462	-	membrane protein
426	 34.04	-1	519233..519799	-	188	209694060	-	VSAL_I0463	-	transposase
427	 35.70	-1	519817..520239	-	140	209694061	-	VSAL_I0464	-	transposase
428	 36.86	0	520546..522531	+	661	209694062	-	VSAL_I0465	-	putative membrane associated signaling protein
429	 36.54	0	522657..524120	+	487	209694063	mshI	VSAL_I0466	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHI)
430	 34.43	-1	524113..524751	+	212	209694064	mshJ	VSAL_I0467	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHJ)
431	 36.84	0	524753..525094	+	113	209694065	mshK	VSAL_I0468	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHK)
432	 41.19	0	525107..526747	+	546	209694066	mshD	VSAL_I0469	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHD)
433	 38.52	0	526758..527606	+	282	209694067	mshM	VSAL_I0470	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHM)
434	 39.94	0	527603..528676	+	357	209694068	mshN	VSAL_I0471	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHN)
435	 41.16	0	530410..531636	+	408	209694069	mshG	VSAL_I0473	-	type IV pilus, mannose-sensitive hemagglutinin protein
436	 35.10	-1	531636..532088	+	150	209694070	mshF	VSAL_I0474	-	type IV pilus, mannose-sensitive hemagglutinin protein MshF
437	 41.23	0	532170..532739	+	189	209694071	mshB	VSAL_I0475	-	type IV pilus, prepilin-like protein (MSHB)
438	 40.30	0	532892..533365	+	157	209694072	mshA	VSAL_I0476	-	type IV pilus, mannose-sensitive hemagglutinin A
439	 39.07	0	533617..534087	+	156	209694073	mshA	VSAL_I0477	-	type IV pilus, mannose-sensitive hemagglutinin A
440	 37.07	0	534214..534828	+	204	209694074	mshC	VSAL_I0478	-	type IV pilus, prepilin-like protein (MSHC)
441	 38.05	0	534825..535418	+	197	209694075	mshD	VSAL_I0479	-	type IV pilus, prepilin-like protein (MSHD)
442	 40.61	0	535418..536173	+	251	209694076	mshO	VSAL_I0480	-	exported protein MshO
443	 40.00	0	536163..536597	+	144	209694077	mshP	VSAL_I0481	-	exported protein MshP
444	 45.88	+2	541014..542057	+	347	209694078	mreB	VSAL_I0483	-	rod shape-determining protein MreB
445	 37.53	0	542080..542937	+	285	209694079	mreC	VSAL_I0484	-	rod shape-determining protein MreC
446	 40.24	0	542927..543418	+	163	209694080	mreD	VSAL_I0485	-	rod shape-determining protein MreD
447	 39.76	0	543428..544003	+	191	209694081	-	VSAL_I0486	-	Maf-like protein
448	 39.73	0	544023..545492	+	489	209694082	cafA	VSAL_I0487	-	ribonuclease G
449	 38.74	0	545504..549367	+	1287	209694083	-	VSAL_I0488	-	hypothetical protein
450	 43.40	+1	549469..550233	+	254	209694084	-	VSAL_I0489	-	putative carbon-nitrogen hydrolase
451	 42.32	0	550344..551789	+	481	209694085	tldD	VSAL_I0490	-	protein TldD
452	 39.07	0	551887..552426	-	179	209694086	-	VSAL_I0491	-	hypothetical protein
453	 42.49	0	552536..553879	+	447	209694087	pmbA	VSAL_I0492	-	protein PmbA (protein TldE)
454	 44.84	+1	553963..555318	-	451	209694088	-	VSAL_I0493	-	magnesium transporter
455	 44.44	+1	555630..555908	-	92	209694089	ptsO	VSAL_I0494	-	phosphocarrier protein NPr
456	 39.18	0	555911..556765	-	284	209694090	-	VSAL_I0495	-	ATP/GTP-binding protein
457	 40.49	0	556789..557235	-	148	209694091	ptsN	VSAL_I0496	-	nitrogen regulatory IIA protein, PTS system
458	 35.76	-1	557237..557524	-	95	209694092	-	VSAL_I0497	-	sigma-54 modulation protein
459	 41.63	0	557544..559013	-	489	209694093	rpoN	VSAL_I0498	-	RNA polymerase sigma-54 factor (sigma-N)
460	 40.63	0	559040..559765	-	241	209694094	-	VSAL_I0499	-	ABC transport protein, ATP-binding component
461	 37.13	0	559768..560268	-	166	209694095	-	VSAL_I0500	-	hypothetical protein
462	 36.70	0	560249..560812	-	187	209694096	-	VSAL_I0501	-	hypothetical protein
463	 40.50	0	560809..561366	-	185	209694097	kdsC	VSAL_I0502	-	3-deoxy-d-manno-octulosonate 8-phosphate phosphatase
464	 41.54	0	561366..562340	-	324	209694098	kdsD	VSAL_I0503	-	arabinose 5-phosphate isomerase
465	 40.76	0	562544..563512	-	322	209694099	-	VSAL_I0504	-	sodium/calcium exchanger protein
466	 41.39	0	563711..564517	+	268	209694100	-	VSAL_I0505	-	toluene tolerance protein Ttg2A
467	 43.40	+1	564510..565304	+	264	209694101	-	VSAL_I0506	-	toluene tolerance protein Ttg2B
468	 40.20	0	565307..565801	+	164	209694102	-	VSAL_I0507	-	toluene tolerance protein Ttg2C
469	 37.85	0	565801..566442	+	213	209694103	-	VSAL_I0508	-	toluene tolerance protein Ttg2
470	 35.83	-1	566442..566762	+	106	209694104	-	VSAL_I0509	-	conserved hypothetical protein containing
471	 37.21	0	566762..567019	+	85	209694105	-	VSAL_I0510	-	hypothetical protein
472	 43.03	+1	567032..568300	+	422	209694106	murA	VSAL_I0511	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
473	 40.50	0	568435..569160	+	241	209694107	plsC	VSAL_I0512	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
474	 36.21	-1	571115..571462	-	115	209694108	-	VSAL_I0515	-	transposase
475	 38.15	0	571459..571728	-	89	209694109	-	VSAL_I0516	-	transposase
476	 41.03	0	572099..572488	-	129	209694110	-	VSAL_I0517	-	Endoribonuclease L-PSP
477	 38.28	0	572628..573092	-	154	209694111	pyrI	VSAL_I0518	-	aspartate carbamoyltransferase regulatory chain
478	 40.00	0	573106..574035	-	309	209694112	pyrB	VSAL_I0519	-	aspartate carbamoyltransferase catalytic subunit
479	 40.50	0	574311..575315	-	334	209694113	argI	VSAL_I0520	-	ornithine carbamoyltransferase chain I
480	 40.62	0	575411..576631	-	406	209694114	arcA	VSAL_I0521	-	arginine deiminase
481	 39.09	0	576784..577200	+	138	209694115	-	VSAL_I0522	-	hypothetical protein
482	 38.59	0	577288..578124	+	278	209694116	-	VSAL_I0523	-	hypothetical protein
483	 43.71	+1	578281..581142	-	953	209694117	valS	VSAL_I0524	-	valyl-tRNA synthetase
484	 41.67	0	581253..581696	-	147	209694118	holC	VSAL_I0525	-	DNA polymerase III, chi subunit
485	 43.61	+1	581790..583298	-	502	209694119	pepA	VSAL_I0526	-	cytosol aminopeptidase
486	 39.71	0	583488..584600	+	370	209694120	-	VSAL_I0527	-	putative permease
487	 39.28	0	584593..585669	+	358	209694121	-	VSAL_I0528	-	putative permease
488	 39.41	0	585746..586222	-	158	209694122	-	VSAL_I0529	-	membrane protein
489	 34.11	-1	586622..586879	-	85	209694123	-	VSAL_I0530	-	hypothetical protein
490	 41.86	0	586955..587341	-	128	209694124	dgkA	VSAL_I0531	-	diacylglycerol kinase
491	 39.84	0	588313..589449	-	378	209694125	mltC	VSAL_I0532	-	membrane-bound lytic murein transglycosylase C precursor
492	 39.93	0	589560..589832	-	90	209694126	yggX	VSAL_I0533	-	probable Fe(2+) trafficking protein
493	 42.17	0	589835..590887	-	350	209694127	mutY	VSAL_I0534	-	A/G-specific adenine glycosylase
494	 45.89	+2	591105..591821	+	238	209694128	trmB	VSAL_I0535	-	tRNA (guanine-n(7)-)-methyltransferase
495	 41.69	0	591928..592848	+	306	209694129	glsA	VSAL_I0536	-	thermolabile glutaminase
496	 41.43	0	592953..594113	-	386	209694130	yggW	VSAL_I0537	-	oxygen-independent coproporphyrinogen III oxidase-like protein
497	 44.05	+1	594117..594713	-	198	209694131	-	VSAL_I0538	-	putative hydrolase
498	 35.88	-1	594724..595155	-	143	209694132	-	VSAL_I0539	-	hypothetical protein
499	 39.29	0	595227..595478	-	83	209694133	-	VSAL_I0540	-	hypothetical protein
500	 38.92	0	595507..596061	-	184	209694134	-	VSAL_I0541	-	membrane protein, related to K+ transport
501	 43.83	+1	596137..596955	-	272	209694135	proC	VSAL_I0542	-	pyrroline-5-carboxylate reductase
502	 38.80	0	596942..597709	-	255	209694136	-	VSAL_I0543	-	membrane protein, related to K+ transport
503	 40.85	0	597733..598770	+	345	209694137	pilT	VSAL_I0544	-	twitching mobility protein PilT, type II/IV secretion system protein
504	 41.10	0	598773..599879	+	368	209694138	pilU	VSAL_I0545	-	twitching motility protein PilU, type II/IV secretion system protein
505	 41.78	0	599983..600408	-	141	209694139	yqgF	VSAL_I0546	-	hypothetical protein
506	 40.43	0	600405..600968	-	187	209694140	-	VSAL_I0547	-	hypothetical protein
507	 41.34	0	601042..602028	-	328	209694141	gshB	VSAL_I0548	-	glutathione synthetase
508	 39.21	0	602012..602743	-	243	209694142	-	VSAL_I0549	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.